EWM20744.1, cds9930 (CDS) Nannochloropsis gaditana

Overview
NameEWM20744.1
Unique Namecds9930
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:113585..113991 -
Alignment locationKK037258.1:113017..113311 -
Alignment locationKK037258.1:112690..112825 -
Alignment locationKK037258.1:112313..112499 -
Alignment locationKK037258.1:112023..112116 -
Alignment locationKK037258.1:111344..111793 -
Alignment locationKK037258.1:111004..111135 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20744.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100249g5.5590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:113585..113991 -
KK037258.1supercontigKK037258.1:113017..113311 -
KK037258.1supercontigKK037258.1:112690..112825 -
KK037258.1supercontigKK037258.1:112313..112499 -
KK037258.1supercontigKK037258.1:112023..112116 -
KK037258.1supercontigKK037258.1:111344..111793 -
KK037258.1supercontigKK037258.1:111004..111135 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1179.08 bits (3049), Expect = 0.000e+0
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0
Query:    1 MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK 566
            MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK
Sbjct:    1 MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK 566          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553178225|ref|XP_005852531.1| (hypothetical protein NGA_0697500 [Nannochloropsis gaditana CCMP526] >gi|422296002|gb|EKU23301.1| hypothetical protein NGA_0697500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.005 bits (811), Expect = 2.527e-102
Identity = 154/171 (90.06%), Postives = 157/171 (91.81%), Query Frame = 0
Query:  361 LSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQK 531
            +  +L       +IFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDL T  S  K
Sbjct:   23 VEAALFASLPLRRIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLVTSKSLPK 193          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553193038|ref|XP_005855698.1| (hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526] >gi|422293365|gb|EKU20665.1| hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 236.498 bits (602), Expect = 7.782e-67
Identity = 123/281 (43.77%), Postives = 173/281 (61.57%), Query Frame = 0
Query:  162 SSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNS-----SSASMF 437
            SS +   SSP LD ++E  D+ AMVPLYLQAF++L Q+G+LNRKR I LLK W ++ +   G+CDPT G FAEV+ AF I D EL  P  +       AE+ RLW + A+R+ GEGAK    + + +Q N+ SRA+ M  +  K++ ++ N  + TYFR P EFM+D W RRCL+ FL AA V P+DR ++F+ L    L     ++T   K  DR  ++ L+L +++VV++ P E+ SL + EPAPPSRH+  +  V R R    P  S     S AS+F
Sbjct:  115 SSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAK---SDAIFKQLNDGSRAIRMECLGGKERRLVVNDVYLTYFRRPEEFMKDAWARRCLIGFLLAATVVPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLF 392          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100603|gb|EWM20741.1| (hypothetical protein Naga_100249g4 [Nannochloropsis gaditana])

HSP 1 Score: 119.783 bits (299), Expect = 6.814e-25
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0
Query:  162 SSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAK 279
            SS +   SSP LD ++E  D+ AMVPLYLQAF++L Q+G+LNRKR I LLK W ++ +   G+CDPT G FAEV+ AF I D EL  P  +       AE+ RLW + A+R+ GEGAK
Sbjct:  176 SSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAK 293          

HSP 2 Score: 67.3958 bits (163), Expect = 3.358e-8
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 0
Query:  346 PEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHP-CNSSS----ASMF 437
            P+DR ++F+ L    L     ++T   K  DR  ++ L+L +++VV++ P E+ SL + EPAPPSRH+  +  V R R    P C++ S    AS+F
Sbjct:  295 PDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLF 391          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553188281|ref|XP_005854767.1| (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >gi|553191620|ref|XP_005855415.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422293646|gb|EKU20946.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422294294|gb|EKU21594.1| hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.153 bits (274), Expect = 7.540e-23
Identity = 70/283 (24.73%), Postives = 117/283 (41.34%), Query Frame = 0
Query:  118 CRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRA----VYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPN 396
            C  C   +  C   FPC RC R +  C P    +                   P L+ V+          +YLQAF+ LF  G + R  A+  LK W  L  +   D   T G  + V+  F ++ +ELE+P  +  +PP H    RL   ++        + L+E  + ++ N  +RA    + M   +    W   N+ H    +   E      +R+ + ++L A   APEDR  Y   +         + +T F K++D+ G + L L   + +++GP+
Sbjct:   54 CYACRASRTKCSGGFPCARCSRLSVCCLPNNWKR-----------------EEPILEYVLTTHSPKPFAEMYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADV--TLGVASHVQKRFNVSAIELEEPMRMLQDPPSHVRYQRLQQYQSSAASQARTQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLTKTMFFKMYDKDGSVKLCLHTARTIRLGPH 317          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585104545|gb|EWM23477.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 9.585e-12
Identity = 83/335 (24.78%), Postives = 135/335 (40.30%), Query Frame = 0
Query:  173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE---------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLYLSD----HQVVKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTH----------HPCNSSSASMFRVASGDM 444
            L+ ++ER D   M   +L AF  + + G ++R+  +G+L+ W  L  +   D   T G  A +  AF +   EL                    L   P  ++ +G+L + R    + E               GA  L+ + + R+ ++    + +  +D  +  VI  SN+A+   F  P   + +   R CL  FLFAA VA  DR  +F++   A  S                   +  + FLKIF R G + LY +         + G  E     +  EP P SR++T RP+    ++TH          HP    S+S+   A G+M
Sbjct:  191 LETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDL--TLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPE----KATHSKTKLFKRRPHP-KIGSSSLTVAADGEM 518          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100154|gb|EWM20491.1| (hypothetical protein Naga_100382g3 [Nannochloropsis gaditana])

HSP 1 Score: 78.1814 bits (191), Expect = 1.769e-11
Identity = 95/404 (23.51%), Postives = 160/404 (39.60%), Query Frame = 0
Query:  173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE----------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLY---LSDHQV-VKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFR----VASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPV 518
            L  ++ER D P M   +L AF  + + G ++R+  +G+L+ W  L  +   D   T G  A +  A ++   EL+               D        P ++ +GRL + R    + E                GA  L+ + + R+ ++    + +  +D  +  VI  SN+A+   F  P   + +   R CL  FLFAA VA  DR  +F++   A  S                   +  + FLKIF R G + LY   L+  +V ++ G  E     +  EP P SR++T RP+ T           S  ++FR      +G +  R+A +V        E+ W      R   +++            S        +   R+ P +  P +AS+P+
Sbjct:   35 LGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDL--TLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTP-NSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKT---------TQSKTTLFRQRPSAETGSL-SREAREVCASVGEGEELGW------RPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPL 419          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585104110|gb|EWM23204.1| (c6 transcription [Nannochloropsis gaditana])

HSP 1 Score: 62.003 bits (149), Expect = 4.317e-8
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 0
Query:  104 KKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLL 211
            K++RA R+     +C  C   K  CD N+PC RC+R + PCR   +                 + S+P + LV++R D  A+  LY++AF  L +EG + RK+A+ +L
Sbjct:   32 KRKRAPRLLC---TCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDS---------------WASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121          
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585101548|gb|EWM21361.1| (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana])

HSP 1 Score: 64.3142 bits (155), Expect = 2.781e-7
Identity = 53/231 (22.94%), Postives = 103/231 (44.59%), Query Frame = 0
Query:  189 YLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRV-LGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFK-LLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRP 417
            + +  ++   EG+ +R+R I  ++ W  L +++ GD   T+G   +V  +  I+ +++ED   +A  P     KGR     A  V L +  + + +  +  +  + S   ++  +  +    ++N A +         M   +  R     L A  VAP+DR  +F+  +    + +   K T  LK F   G + L +   + VK+G      + + E AP S+ +T+RP
Sbjct:    3 FYKVRREFGSEGI-DRRRVIECMRIWQHLSILVGGDV--TWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQI-LFEAAPQSKRLTSRP 229          
The following BLAST results are available for this feature:
BLAST of EWM20744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585100606|gb|EWM20744.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|553178225|ref|XP_005852531.1|2.527e-10290.06hypothetical protein NGA_0697500 [Nannochloropsis ... [more]
gi|553193038|ref|XP_005855698.1|7.782e-6743.77hypothetical protein NGA_0645100 [Nannochloropsis ... [more]
gi|585100603|gb|EWM20741.1|6.814e-2551.69hypothetical protein Naga_100249g4 [Nannochloropsi... [more]
gi|553188281|ref|XP_005854767.1|7.540e-2324.73hypothetical protein NGA_0115602 [Nannochloropsis ... [more]
gi|585104545|gb|EWM23477.1|9.585e-1224.78Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|585100154|gb|EWM20491.1|1.769e-1123.51hypothetical protein Naga_100382g3 [Nannochloropsi... [more]
gi|585104110|gb|EWM23204.1|4.317e-833.33c6 transcription [Nannochloropsis gaditana][more]
gi|585101548|gb|EWM21361.1|2.781e-722.94hypothetical protein Naga_100666g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9961rna9961Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications