EWM20744.1, cds9930 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1179.08 bits (3049), Expect = 0.000e+0 Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0 Query: 1 MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK 566 MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK Sbjct: 1 MDSSGIDLEEGATLIEELSDWPALDDIFCDDATKFEGGQGEQTDIDTVIAATSPFGLDFNASAVRPSPFSLEASLAPGAHHGQDLGKHEVAPGQKEGTVDVTHKKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQKIKGRAWCRMNEVGRTEICIDGSTENEFHNESCIGK 566
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553178225|ref|XP_005852531.1| (hypothetical protein NGA_0697500 [Nannochloropsis gaditana CCMP526] >gi|422296002|gb|EKU23301.1| hypothetical protein NGA_0697500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 317.005 bits (811), Expect = 2.527e-102 Identity = 154/171 (90.06%), Postives = 157/171 (91.81%), Query Frame = 0 Query: 361 LSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLDTGSSQQK 531 + +L +IFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDL T S K Sbjct: 23 VEAALFASLPLRRIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSPDLVTSKSLPK 193
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553193038|ref|XP_005855698.1| (hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526] >gi|422293365|gb|EKU20665.1| hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 236.498 bits (602), Expect = 7.782e-67 Identity = 123/281 (43.77%), Postives = 173/281 (61.57%), Query Frame = 0 Query: 162 SSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNS-----SSASMF 437 SS + SSP LD ++E D+ AMVPLYLQAF++L Q+G+LNRKR I LLK W ++ + G+CDPT G FAEV+ AF I D EL P + AE+ RLW + A+R+ GEGAK + + +Q N+ SRA+ M + K++ ++ N + TYFR P EFM+D W RRCL+ FL AA V P+DR ++F+ L L ++T K DR ++ L+L +++VV++ P E+ SL + EPAPPSRH+ + V R R P S S AS+F Sbjct: 115 SSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAK---SDAIFKQLNDGSRAIRMECLGGKERRLVVNDVYLTYFRRPEEFMKDAWARRCLIGFLLAATVVPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLF 392
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100603|gb|EWM20741.1| (hypothetical protein Naga_100249g4 [Nannochloropsis gaditana]) HSP 1 Score: 119.783 bits (299), Expect = 6.814e-25 Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0 Query: 162 SSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAK 279 SS + SSP LD ++E D+ AMVPLYLQAF++L Q+G+LNRKR I LLK W ++ + G+CDPT G FAEV+ AF I D EL P + AE+ RLW + A+R+ GEGAK Sbjct: 176 SSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAK 293 HSP 2 Score: 67.3958 bits (163), Expect = 3.358e-8 Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 0 Query: 346 PEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHP-CNSSS----ASMF 437 P+DR ++F+ L L ++T K DR ++ L+L +++VV++ P E+ SL + EPAPPSRH+ + V R R P C++ S AS+F Sbjct: 295 PDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLF 391
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|553188281|ref|XP_005854767.1| (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >gi|553191620|ref|XP_005855415.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422293646|gb|EKU20946.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422294294|gb|EKU21594.1| hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 110.153 bits (274), Expect = 7.540e-23 Identity = 70/283 (24.73%), Postives = 117/283 (41.34%), Query Frame = 0 Query: 118 CRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRA----VYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPN 396 C C + C FPC RC R + C P + P L+ V+ +YLQAF+ LF G + R A+ LK W L + D T G + V+ F ++ +ELE+P + +PP H RL ++ + L+E + ++ N +RA + M + W N+ H + E +R+ + ++L A APEDR Y + + +T F K++D+ G + L L + +++GP+ Sbjct: 54 CYACRASRTKCSGGFPCARCSRLSVCCLPNNWKR-----------------EEPILEYVLTTHSPKPFAEMYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADV--TLGVASHVQKRFNVSAIELEEPMRMLQDPPSHVRYQRLQQYQSSAASQARTQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLTKTMFFKMYDKDGSVKLCLHTARTIRLGPH 317
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585104545|gb|EWM23477.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 79.337 bits (194), Expect = 9.585e-12 Identity = 83/335 (24.78%), Postives = 135/335 (40.30%), Query Frame = 0 Query: 173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE---------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLYLSD----HQVVKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTH----------HPCNSSSASMFRVASGDM 444 L+ ++ER D M +L AF + + G ++R+ +G+L+ W L + D T G A + AF + EL L P ++ +G+L + R + E GA L+ + + R+ ++ + + +D + VI SN+A+ F P + + R CL FLFAA VA DR +F++ A S + + FLKIF R G + LY + + G E + EP P SR++T RP+ ++TH HP S+S+ A G+M Sbjct: 191 LETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDL--TLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPE----KATHSKTKLFKRRPHP-KIGSSSLTVAADGEM 518
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585100154|gb|EWM20491.1| (hypothetical protein Naga_100382g3 [Nannochloropsis gaditana]) HSP 1 Score: 78.1814 bits (191), Expect = 1.769e-11 Identity = 95/404 (23.51%), Postives = 160/404 (39.60%), Query Frame = 0 Query: 173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE----------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLY---LSDHQV-VKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFR----VASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPV 518 L ++ER D P M +L AF + + G ++R+ +G+L+ W L + D T G A + A ++ EL+ D P ++ +GRL + R + E GA L+ + + R+ ++ + + +D + VI SN+A+ F P + + R CL FLFAA VA DR +F++ A S + + FLKIF R G + LY L+ +V ++ G E + EP P SR++T RP+ T S ++FR +G + R+A +V E+ W R +++ S + R+ P + P +AS+P+ Sbjct: 35 LGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDL--TLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTP-NSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKT---------TQSKTTLFRQRPSAETGSL-SREAREVCASVGEGEELGW------RPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPL 419
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585104110|gb|EWM23204.1| (c6 transcription [Nannochloropsis gaditana]) HSP 1 Score: 62.003 bits (149), Expect = 4.317e-8 Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 0 Query: 104 KKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLL 211 K++RA R+ +C C K CD N+PC RC+R + PCR + + S+P + LV++R D A+ LY++AF L +EG + RK+A+ +L Sbjct: 32 KRKRAPRLLC---TCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDS---------------WASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
BLAST of EWM20744.1 vs. NCBI_GenBank
Match: gi|585101548|gb|EWM21361.1| (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana]) HSP 1 Score: 64.3142 bits (155), Expect = 2.781e-7 Identity = 53/231 (22.94%), Postives = 103/231 (44.59%), Query Frame = 0 Query: 189 YLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRV-LGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFK-LLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRP 417 + + ++ EG+ +R+R I ++ W L +++ GD T+G +V + I+ +++ED +A P KGR A V L + + + + + + + S ++ + + ++N A + M + R L A VAP+DR +F+ + + + K T LK F G + L + + VK+G + + E AP S+ +T+RP Sbjct: 3 FYKVRREFGSEGI-DRRRVIECMRIWQHLSILVGGDV--TWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQI-LFEAAPQSKRLTSRP 229 The following BLAST results are available for this feature:
BLAST of EWM20744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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