EWM20740.1, cds9928 (CDS) Nannochloropsis gaditana

Overview
NameEWM20740.1
Unique Namecds9928
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:105027..105536 -
Alignment locationKK037258.1:104764..104910 -
Alignment locationKK037258.1:104394..104495 -
Alignment locationKK037258.1:104084..104228 -
Alignment locationKK037258.1:103858..103952 -
Alignment locationKK037258.1:103459..103635 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20740.1
Productchannel hemolysin iii family protein
Orig transcript idgnl|cribi|Naga_100249g3.5586.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:105027..105536 -
KK037258.1supercontigKK037258.1:104764..104910 -
KK037258.1supercontigKK037258.1:104394..104495 -
KK037258.1supercontigKK037258.1:104084..104228 -
KK037258.1supercontigKK037258.1:103858..103952 -
KK037258.1supercontigKK037258.1:103459..103635 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004254AdipoR/HlyIII-related
Homology
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|585100602|gb|EWM20740.1| (channel hemolysin iii family protein [Nannochloropsis gaditana])

HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF 391
            MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF
Sbjct:    1 MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF 391          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|553193028|ref|XP_005855695.1| (channel hemolysin iii family [Nannochloropsis gaditana CCMP526] >gi|422293362|gb|EKU20662.1| channel hemolysin iii family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 458.373 bits (1178), Expect = 3.483e-159
Identity = 235/283 (83.04%), Postives = 235/283 (83.04%), Query Frame = 0
Query:   90 MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDK-------------AKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELG 359
            MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDK             AKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCE                                  EHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQK LIYFVLTASVMGFGLHELG
Sbjct:    1 MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKTMPSLTSSRDPRQAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCE----------------------------------EHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKKLIYFVLTASVMGFGLHELG 249          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|974574797|dbj|BAU31722.1| (hemolysin III family protein [Microcella alkaliphila])

HSP 1 Score: 78.9518 bits (193), Expect = 4.209e-13
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 0
Query:  217 YCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATW 329
            Y  G  KP WRG +H  +  L  V+ L L+A  D P    ++++F L  L LF  S  YHR  W+ R  V +++LDH  IF++++G   PLSLLAL   +  +L    LV  W
Sbjct:   40 YRAGEKKPTWRGWIHAGTFPLAIVLGLVLVALGDGPMARWSSAVFVLSSLLLFGISATYHRFTWSDRMRVLLKRLDHANIFLLIAGTYTPLSLLALPLDKGLIL----LVLVW 148          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1188353533|ref|WP_085475383.1| (hemolysin III [Rathayibacter sp. VKM Ac-2121] >gi|1184402266|emb|SMH34139.1| hemolysin III [Rathayibacter sp. VKM Ac-2121])

HSP 1 Score: 77.0258 bits (188), Expect = 1.922e-12
Identity = 59/171 (34.50%), Postives = 80/171 (46.78%), Query Frame = 0
Query:  150 QTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVL 320
             TP +P   E   ST  D D A     A A P  PN          P  D E+D A             EG  KP WRG +H     L  V  + L+  AD  T   AA++F    L LF  S  YHRV W+PR +V +++ DH  IF++++G   PL+ LAL  ++ ++L
Sbjct:    3 STPPSPDPAEG--STSRDADLAVAEDDA-AGPELPNL---------PLVDDEIDHASS----------VEG--KPSWRGWIHAGLFPLAAVAGVVLIGVADGTTAKWAAAVFTTTSLLLFGVSALYHRVDWSPRTKVILKRFDHANIFLLIAGTYTPLAALALPPSQGWLL 149          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1087252898|emb|SDD01939.1| (hemolysin III [Alloactinosynnema iranicum])

HSP 1 Score: 75.0998 bits (183), Expect = 5.551e-12
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0
Query:  219 EGAMKPCWRGVLHGWSLFLVPVIALALLAKADT--PTEHLAASLFALCCLCLFLSSWAYHRVHW-TPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAG 322
             G+ KP  RGV+H WS F+  +    L A A T   T  LA +++ +  L LF  S  YHR  W T R   WM++LDH MIF+ ++G   P SLLA+ Q   Y++ G
Sbjct:    6 AGSTKPRMRGVIHFWSFFVSLITGTTLFALALTVSATAALATAVYGVTVLGLFGVSALYHRRWWVTERARTWMKRLDHSMIFLFIAGTYTPFSLLAMDQPTGYIVLG 112          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1085852566|emb|SDR93710.1| (hemolysin III [Agromyces flavus])

HSP 1 Score: 75.8702 bits (185), Expect = 5.796e-12
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 0
Query:  222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWG 330
            +KP WRG +H  +  L     + L+A A+ P    A+++F L  + LF +S  YHR  W PR +V ++++DH  IF++++G   PLS+LAL   + +VL    L   WG
Sbjct:   53 LKPTWRGWIHAGTFPLTIAAGVVLIALAEGPWAKWASAVFTLTSMLLFGNSALYHRFDWKPRTKVILKRIDHANIFLLIAGTYTPLSILALPPDKGFVL----LAIVWG 157          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|738838167|ref|WP_036727838.1| (hemolysin III [Patulibacter minatonensis])

HSP 1 Score: 74.3294 bits (181), Expect = 1.103e-11
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 0
Query:  221 AMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWT-PRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQT-RLYVLAGSALVATWGMIQIFRLQKNL 341
            A+KP  RGVLH W+ F+     + L+  + T    +A++++A   + LF  S  YHR++WT P    WM++LDH MIF+MV+G V P++ L L    R  VL+       WGM  I  + K L
Sbjct:   12 ALKPSMRGVLHQWAAFVAAAAGVYLVLASPTAEARVASAVYAASIVGLFTVSATYHRINWTRPGARAWMRRLDHSMIFVMVAGTVTPIAALVLDGGWRTTVLS-----VAWGMAGIGIVIKLL 129          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1176640428|ref|WP_082467409.1| (hemolysin III [Leifsonia sp. Leaf264])

HSP 1 Score: 75.0998 bits (183), Expect = 1.105e-11
Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 0
Query:  222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQI-FRL 337
            +KP WRG +H  +  L  V+ + L+  AD P    ++++F L  L LF +S  YHR  W PR +V ++++DH  IF++++G   PL++LAL   + ++L   ALV T  ++ I FR+
Sbjct:   56 VKPTWRGWIHAGTFPLALVLGIVLICLADGPWAQWSSAVFVLTSLLLFGNSALYHRFDWQPRTKVILKRIDHANIFLLIAGTYTPLAVLALPPEKGWLLL--ALVWTGALLGIGFRV 170          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1199029546|ref|WP_087135783.1| (hemolysin III [Mycetocola reblochoni] >gi|1145387449|emb|SJN16968.1| COG1272: Predicted membrane protein hemolysin III homolog [Mycetocola reblochoni REB411])

HSP 1 Score: 74.7146 bits (182), Expect = 1.495e-11
Identity = 37/101 (36.63%), Postives = 63/101 (62.38%), Query Frame = 0
Query:  222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL--QQTRLYVL 320
            +KP WRG +H  +  +     + L+  AD P    ++++FAL  L LF +S  YHR +W PR +V +++LDH  IF++++G   P+++LAL  ++ RL +L
Sbjct:   55 VKPSWRGWIHAATFPVAVAAGIVLVVLADGPAASWSSAVFALTSLLLFGNSALYHRFNWGPRMKVALKRLDHANIFLLIAGTYTPIAVLALPPEKGRLLLL 155          
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1099969970|emb|SFI10482.1| (hemolysin III [Amycolatopsis regifaucium])

HSP 1 Score: 73.1738 bits (178), Expect = 2.615e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 0
Query:  223 KPCWRGVLHGWSLFLVPVIALALLAKADT---PTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWG 330
            +P  RG +H WS F+  V A+ L++ A +   P   L+ S++ L  L LF  S  YHR  W+PR   WM++ DH MIF+ ++G   P +LLA+ Q   Y++    L   WG
Sbjct:   19 RPRLRGHIHFWSFFVAVVGAVTLISLAASTVSPLAALSTSVYGLTVLGLFGVSALYHRRLWSPRAYEWMKRADHSMIFLFIAGTYTPFTLLAMSQPTGYIV----LAIVWG 125          
The following BLAST results are available for this feature:
BLAST of EWM20740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100602|gb|EWM20740.1|0.000e+0100.00channel hemolysin iii family protein [Nannochlorop... [more]
gi|553193028|ref|XP_005855695.1|3.483e-15983.04channel hemolysin iii family [Nannochloropsis gadi... [more]
gi|974574797|dbj|BAU31722.1|4.209e-1338.94hemolysin III family protein [Microcella alkaliphi... [more]
gi|1188353533|ref|WP_085475383.1|1.922e-1234.50hemolysin III [Rathayibacter sp. VKM Ac-2121] >gi|... [more]
gi|1087252898|emb|SDD01939.1|5.551e-1241.12hemolysin III [Alloactinosynnema iranicum][more]
gi|1085852566|emb|SDR93710.1|5.796e-1236.70hemolysin III [Agromyces flavus][more]
gi|738838167|ref|WP_036727838.1|1.103e-1138.21hemolysin III [Patulibacter minatonensis][more]
gi|1176640428|ref|WP_082467409.1|1.105e-1136.75hemolysin III [Leifsonia sp. Leaf264][more]
gi|1199029546|ref|WP_087135783.1|1.495e-1136.63hemolysin III [Mycetocola reblochoni] >gi|11453874... [more]
gi|1099969970|emb|SFI10482.1|2.615e-1137.84hemolysin III [Amycolatopsis regifaucium][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9959rna9959Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications