EWM20740.1, cds9928 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|585100602|gb|EWM20740.1| (channel hemolysin iii family protein [Nannochloropsis gaditana]) HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query: 1 MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF 391
MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF
Sbjct: 1 MWFACIGRARSDDKVSNDQDSSILILSSHIHCTSKAVPCAQTLFTKSAFPRYLDCNQDHLCSEFDAPWPHVLYRVCFSIVCLSREKTTKMREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELGREGGREGGREGKREGEREAKTDVFCSDGHSLF 391
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|553193028|ref|XP_005855695.1| (channel hemolysin iii family [Nannochloropsis gaditana CCMP526] >gi|422293362|gb|EKU20662.1| channel hemolysin iii family [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 458.373 bits (1178), Expect = 3.483e-159 Identity = 235/283 (83.04%), Postives = 235/283 (83.04%), Query Frame = 0
Query: 90 MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDK-------------AKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHELG 359
MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDK AKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCE EHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQK LIYFVLTASVMGFGLHELG
Sbjct: 1 MREFAFLSLVSPYVLPYASVHIQRMCKSDIKGSSQPPLPASHSLPPPPAETPHSVHGATDQTPSTPLQEEKDLSTRVDTDKTMPSLTSSRDPRQAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCE----------------------------------EHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKKLIYFVLTASVMGFGLHELG 249
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|974574797|dbj|BAU31722.1| (hemolysin III family protein [Microcella alkaliphila]) HSP 1 Score: 78.9518 bits (193), Expect = 4.209e-13 Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 0
Query: 217 YCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATW 329
Y G KP WRG +H + L V+ L L+A D P ++++F L L LF S YHR W+ R V +++LDH IF++++G PLSLLAL + +L LV W
Sbjct: 40 YRAGEKKPTWRGWIHAGTFPLAIVLGLVLVALGDGPMARWSSAVFVLSSLLLFGISATYHRFTWSDRMRVLLKRLDHANIFLLIAGTYTPLSLLALPLDKGLIL----LVLVW 148
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1188353533|ref|WP_085475383.1| (hemolysin III [Rathayibacter sp. VKM Ac-2121] >gi|1184402266|emb|SMH34139.1| hemolysin III [Rathayibacter sp. VKM Ac-2121]) HSP 1 Score: 77.0258 bits (188), Expect = 1.922e-12 Identity = 59/171 (34.50%), Postives = 80/171 (46.78%), Query Frame = 0
Query: 150 QTPSTPLQEEKDLSTRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVL 320
TP +P E ST D D A A A P PN P D E+D A EG KP WRG +H L V + L+ AD T AA++F L LF S YHRV W+PR +V +++ DH IF++++G PL+ LAL ++ ++L
Sbjct: 3 STPPSPDPAEG--STSRDADLAVAEDDA-AGPELPNL---------PLVDDEIDHASS----------VEG--KPSWRGWIHAGLFPLAAVAGVVLIGVADGTTAKWAAAVFTTTSLLLFGVSALYHRVDWSPRTKVILKRFDHANIFLLIAGTYTPLAALALPPSQGWLL 149
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1087252898|emb|SDD01939.1| (hemolysin III [Alloactinosynnema iranicum]) HSP 1 Score: 75.0998 bits (183), Expect = 5.551e-12 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0
Query: 219 EGAMKPCWRGVLHGWSLFLVPVIALALLAKADT--PTEHLAASLFALCCLCLFLSSWAYHRVHW-TPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAG 322
G+ KP RGV+H WS F+ + L A A T T LA +++ + L LF S YHR W T R WM++LDH MIF+ ++G P SLLA+ Q Y++ G
Sbjct: 6 AGSTKPRMRGVIHFWSFFVSLITGTTLFALALTVSATAALATAVYGVTVLGLFGVSALYHRRWWVTERARTWMKRLDHSMIFLFIAGTYTPFSLLAMDQPTGYIVLG 112
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1085852566|emb|SDR93710.1| (hemolysin III [Agromyces flavus]) HSP 1 Score: 75.8702 bits (185), Expect = 5.796e-12 Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 0
Query: 222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWG 330
+KP WRG +H + L + L+A A+ P A+++F L + LF +S YHR W PR +V ++++DH IF++++G PLS+LAL + +VL L WG
Sbjct: 53 LKPTWRGWIHAGTFPLTIAAGVVLIALAEGPWAKWASAVFTLTSMLLFGNSALYHRFDWKPRTKVILKRIDHANIFLLIAGTYTPLSILALPPDKGFVL----LAIVWG 157
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|738838167|ref|WP_036727838.1| (hemolysin III [Patulibacter minatonensis]) HSP 1 Score: 74.3294 bits (181), Expect = 1.103e-11 Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 0
Query: 221 AMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWT-PRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQT-RLYVLAGSALVATWGMIQIFRLQKNL 341
A+KP RGVLH W+ F+ + L+ + T +A++++A + LF S YHR++WT P WM++LDH MIF+MV+G V P++ L L R VL+ WGM I + K L
Sbjct: 12 ALKPSMRGVLHQWAAFVAAAAGVYLVLASPTAEARVASAVYAASIVGLFTVSATYHRINWTRPGARAWMRRLDHSMIFVMVAGTVTPIAALVLDGGWRTTVLS-----VAWGMAGIGIVIKLL 129
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1176640428|ref|WP_082467409.1| (hemolysin III [Leifsonia sp. Leaf264]) HSP 1 Score: 75.0998 bits (183), Expect = 1.105e-11 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 0
Query: 222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQI-FRL 337
+KP WRG +H + L V+ + L+ AD P ++++F L L LF +S YHR W PR +V ++++DH IF++++G PL++LAL + ++L ALV T ++ I FR+
Sbjct: 56 VKPTWRGWIHAGTFPLALVLGIVLICLADGPWAQWSSAVFVLTSLLLFGNSALYHRFDWQPRTKVILKRIDHANIFLLIAGTYTPLAVLALPPEKGWLLL--ALVWTGALLGIGFRV 170
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1199029546|ref|WP_087135783.1| (hemolysin III [Mycetocola reblochoni] >gi|1145387449|emb|SJN16968.1| COG1272: Predicted membrane protein hemolysin III homolog [Mycetocola reblochoni REB411]) HSP 1 Score: 74.7146 bits (182), Expect = 1.495e-11 Identity = 37/101 (36.63%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 222 MKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL--QQTRLYVL 320
+KP WRG +H + + + L+ AD P ++++FAL L LF +S YHR +W PR +V +++LDH IF++++G P+++LAL ++ RL +L
Sbjct: 55 VKPSWRGWIHAATFPVAVAAGIVLVVLADGPAASWSSAVFALTSLLLFGNSALYHRFNWGPRMKVALKRLDHANIFLLIAGTYTPIAVLALPPEKGRLLLL 155
BLAST of EWM20740.1 vs. NCBI_GenBank
Match: gi|1099969970|emb|SFI10482.1| (hemolysin III [Amycolatopsis regifaucium]) HSP 1 Score: 73.1738 bits (178), Expect = 2.615e-11 Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 0
Query: 223 KPCWRGVLHGWSLFLVPVIALALLAKADT---PTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWG 330
+P RG +H WS F+ V A+ L++ A + P L+ S++ L L LF S YHR W+PR WM++ DH MIF+ ++G P +LLA+ Q Y++ L WG
Sbjct: 19 RPRLRGHIHFWSFFVAVVGAVTLISLAASTVSPLAALSTSVYGLTVLGLFGVSALYHRRLWSPRAYEWMKRADHSMIFLFIAGTYTPFTLLAMSQPTGYIV----LAIVWG 125 The following BLAST results are available for this feature:
BLAST of EWM20740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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