EWM20745.1, cds9927 (CDS) Nannochloropsis gaditana

Overview
NameEWM20745.1
Unique Namecds9927
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:101166..101297 -
Alignment locationKK037258.1:100766..100924 -
Alignment locationKK037258.1:100476..100569 -
Alignment locationKK037258.1:100135..100208 -
Alignment locationKK037258.1:99763..99912 -
Alignment locationKK037258.1:99457..99557 -
Alignment locationKK037258.1:99178..99259 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20745.1
Productputative plastid-lipid-associated protein chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100249g2.5591.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:101166..101297 -
KK037258.1supercontigKK037258.1:100766..100924 -
KK037258.1supercontigKK037258.1:100476..100569 -
KK037258.1supercontigKK037258.1:100135..100208 -
KK037258.1supercontigKK037258.1:99763..99912 -
KK037258.1supercontigKK037258.1:99457..99557 -
KK037258.1supercontigKK037258.1:99178..99259 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|585100607|gb|EWM20745.1| (putative plastid-lipid-associated protein chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MQRECLSGQRGKKNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263
            MQRECLSGQRGKKNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV
Sbjct:    1 MQRECLSGQRGKKNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|553193025|ref|XP_005855694.1| (plastid-lipid associated protein pap, partial [Nannochloropsis gaditana CCMP526] >gi|422293361|gb|EKU20661.1| plastid-lipid associated protein pap, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 394.43 bits (1012), Expect = 1.281e-137
Identity = 201/251 (80.08%), Postives = 201/251 (80.08%), Query Frame = 0
Query:   13 KNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263
            KNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEE                                                  PSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV
Sbjct:    1 KNVLQRGRGGCRSSRTTILAQFLFIVCILTATASGYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEE--------------------------------------------------PSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 201          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|298711617|emb|CBJ32674.1| (plastid-lipid associated protein PAP / fibrillin family protein [Ectocarpus siliculosus])

HSP 1 Score: 107.457 bits (267), Expect = 3.176e-24
Identity = 66/205 (32.20%), Postives = 102/205 (49.76%), Query Frame = 0
Query:   58 HSTSENHASTTPRMLLSGFFP--AGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVV 260
            H+TS N+         + F+P     TG   ++ +  KLK+ L +T+  + RG       R+   + I A+   NP   S TS   S  W L WTTE EI    ++GL G     V Q  +   + L N + F  +S   + S + PE SGPRV F +E  ++ Y GF +P P    V   +++++YLD ++R  RD+RG+  V+
Sbjct:   68 HATSSNN-------WFAQFWPNREDKTGETLEAAK-NKLKQRLLDTVRDTKRGISTSEEQRKDIDELIAAIEPFNPNAKSVTSESLSARWILEWTTEREIIFLMERGLPGKPSGPVEQDIDVDARTLSNRMIFGDDSLFEVASSIDPEDSGPRVNFEFEACKLKYGGFTIPLPP---VGKGWFESVYLDQDLRVTRDVRGDVTVL 261          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|676390147|ref|XP_009038352.1| (hypothetical protein AURANDRAFT_28329, partial [Aureococcus anophagefferens] >gi|323451245|gb|EGB07123.1| hypothetical protein AURANDRAFT_28329, partial [Aureococcus anophagefferens])

HSP 1 Score: 101.679 bits (252), Expect = 4.462e-23
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 0
Query:  116 RERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGC-TCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEP---SGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263
            R+R  + +  L A NPTP  A SPL SG WDL+WTTE E++    +GL     C  V QT + +   LEN + F  +S L + S ++P P   +G R  F +    + ++G  +P P    V   + D +YLD  +R  RDIRG+ L+  R 
Sbjct:   23 RDRFDELLALLEAANPTPRPAESPLFSGAWDLLWTTERELNFAMDKGLFAAGPCTGVSQTIDVAAGDLENTVLFDNDSKLFVGSSIAPSPDDAAGRRFDFKFSSCYLQWRGTKVPLPP---VGEGWGDILYLDDTLRVQRDIRGDLLIATRA 171          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|551607758|ref|XP_005785179.1| (hypothetical protein EMIHUDRAFT_471624 [Emiliania huxleyi CCMP1516] >gi|485638335|gb|EOD32750.1| hypothetical protein EMIHUDRAFT_471624 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 105.531 bits (262), Expect = 6.341e-23
Identity = 74/224 (33.04%), Postives = 109/224 (48.66%), Query Frame = 0
Query:   57 SHSTSENHA--------STTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNL--GGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTE------QSTQRLENIIEFSQNSALRIISKLSPEPS-GPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263
            SH   + HA          T R+L     P+G   + + S       K    ++  S RG V       ++R   A+  L+A+NPTP  A SPL SGTW+ VWTTE E++    +GLLG   +   QT +       +   L N+IEF +   LR+ S +SP+   G R  F+++   V ++   LP P    V   + + +YLD E+R  RD+RG+ LV  RV
Sbjct:  145 SHPPCQRHALGSTLLLTPYTQRLLGGLTLPSGRGAAARGSL------KAEIRSLAASSRGGVLPFDAAQQQRFDAALAELSALNPTPEPARSPLFSGTWECVWTTESELNFAVDKGLLGLPWRRTYQTIDVPRGALTTPSTLTNVIEFEEGGFLRVGSTISPDAERGERFSFSFDSCAVRWRSLELPLPP---VGRGWGELLYLDDELRVQRDVRGDLLVATRV 359          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|551605080|ref|XP_005783977.1| (hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|551617118|ref|XP_005789400.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516] >gi|485637015|gb|EOD31548.1| hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >gi|485642909|gb|EOD36971.1| hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 105.916 bits (263), Expect = 1.214e-22
Identity = 71/224 (31.70%), Postives = 102/224 (45.54%), Query Frame = 0
Query:   47 GYAFSTFLPLSHSTSENHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQ--------RLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRR 262
            G A  ++L +    + + +S  P  L S   P      R+      +LK  L E   G   G         R       LAA+ PT + A+SPL  GTWD++WTTE E+    K+GLLG  C A  Q   ++ +         L+N IEF     LR+ S   P  SG RV F ++     ++   LP P    V + ++D +Y+D E+R  RD RG+  V  R
Sbjct:  220 GEAADSYLFVLTRATPSESSRAPAGLPSPLAPLARAAERR------RLKAQLLEACGGQSLGAEAGAEDLRRVRDLSDRLAALTPTADPASSPLLCGTWDIIWTTESELLALTKRGLLGLPCTAAYQAIARTREGGAGPWAYSLDNAIEF-DGGFLRVGSTCEPAASGGRVNFVFQSCAARWRALELPLPP---VGSGWFDVLYVDEELRVCRDSRGDLQVCAR 433          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|922860410|gb|KOO28300.1| (putative plastid-lipid-associated protein chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 98.2117 bits (243), Expect = 7.892e-20
Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 0
Query:   90 QIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQT-------TEQSTQR------LENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLV 259
            Q + LK  L +  EG   G      GR R I  I+ L  +NPT   A S    GTW +VWTTE E+      GLLG  CQ   QT        E+  QR      L N I F +   LR+ S   P+  G RV F +E     ++   LP P    V + +++ +YLD ++R   D+RG++ V
Sbjct:  275 QRRALKTALMQACEGQRLGAATDEAGRARIINLIRELEQLNPTARPAQSTKLLGTWRVVWTTESELLALTNSGLLGLPCQGASQTIGRTAAADERGAQRGAFDYSLSNEISF-EGGFLRVGSSCEPQAQGGRVNFRFESCAAKWRSVQLPLPP---VGSGWFEVLYLDEDLRLCTDVRGDWQV 453          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|703072316|ref|XP_010089253.1| (putative plastid-lipid-associated protein 11 [Morus notabilis] >gi|587847182|gb|EXB37578.1| putative plastid-lipid-associated protein 11 [Morus notabilis])

HSP 1 Score: 92.4337 bits (228), Expect = 4.536e-19
Identity = 69/206 (33.50%), Postives = 96/206 (46.60%), Query Frame = 0
Query:   63 NHASTTPRMLLSGFFPAGTTGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERT-----IQAIQALAAVNPTPNSATSPLASGTWDLVWTTE-EEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRR 262
             H S  P++  S       +G           KK L   + G DRG   L   R  T     ++AI ALA +     +  S L S TW L+WTTE E++ +  K  L G     VLQ  +   +RL N+I F  +    + S +    S  RV F +  A +  K + +P P F      ++D +YLD EIR V+DIRG+YLVV R
Sbjct:   18 KHTSHAPKITCSSLTAQSQSG-----------KKELLRLIAGEDRG---LKTQRNPTKLASIVKAIDALADLGAGAVTTGSSL-SATWRLLWTTEKEQLFIIDKASLFGTRAGDVLQVIDVEKRRLNNVITFPPDGVFFVRSDIEIA-SKQRVNFRFTSAVLRGKNWEIPLPPF---GQGWFDTVYLDDEIRVVKDIRGDYLVVDR 204          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|297814333|ref|XP_002875050.1| (probable plastid-lipid-associated protein 11 isoform X1 [Arabidopsis lyrata subsp. lyrata] >gi|297320887|gb|EFH51309.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 92.0485 bits (227), Expect = 4.575e-19
Identity = 57/175 (32.57%), Postives = 95/175 (54.29%), Query Frame = 0
Query:   92 KKLKKTLFETMEGSDRGRVNLGGG--RERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTE-EEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGP-RVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRR 262
            ++ K+ L E +   DRG         R+  + AI+++A +  +  +    L+S TW L+WTTE E++ +  K GL G T   VLQ  + + + L N+I F  +    + S +  E + P RV F +  A +  K + +P P F      +++N+Y+D+EIR  +DIRG+YL+V R
Sbjct:   34 QRAKRKLLELISEEDRGVRTQKDATKRDAIVDAIESMAVIGRSSITTGESLSS-TWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRSDI--EIASPQRVNFRFNSAVLRAKNWEIPLPPF---GKGWFENVYMDAEIRVAKDIRGDYLIVDR 202          
BLAST of EWM20745.1 vs. NCBI_GenBank
Match: gi|15236688|ref|NP_191914.1| (Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] >gi|75100154|sp|O81304.1|PAP11_ARATH RecName: Full=Probable plastid-lipid-associated protein 11; AltName: Full=Fibrillin-9 >gi|3193328|gb|AAC19310.1| F6N15.13 gene product [Arabidopsis thaliana] >gi|7267090|emb|CAB80761.1| predicted protein of unknown function [Arabidopsis thaliana] >gi|15809917|gb|AAL06886.1| AT4g00030/F6N15_13 [Arabidopsis thaliana] >gi|18377823|gb|AAL67098.1| AT4g00030/F6N15_13 [Arabidopsis thaliana] >gi|332656416|gb|AEE81816.1| Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] >gi|1032284462|gb|OAO98789.1| hypothetical protein AXX17_AT4G00050 [Arabidopsis thaliana])

HSP 1 Score: 90.1225 bits (222), Expect = 3.107e-18
Identity = 56/174 (32.18%), Postives = 91/174 (52.30%), Query Frame = 0
Query:   92 KKLKKTLFETMEGSDRGRVNLGGGRERT--IQAIQALAAVNPTPNSATSPLASGTWDLVWTTE-EEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRR 262
            ++ K+ L E +   DRG       ++R   + AI+++  +  +  +    L S TW L+WTTE E++ +  K GL G T   VLQ  + + + L N+I F  +    + S +    S  RV F +  A +  K + LP P F      +++N+Y+D EIR  +DIRG+YL+V R
Sbjct:   34 QRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDDSL-SATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRSDIDIA-SPQRVNFRFNSAVLRGKNWELPLPPF---GKGWFENVYMDGEIRVAKDIRGDYLIVDR 202          
The following BLAST results are available for this feature:
BLAST of EWM20745.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100607|gb|EWM20745.1|0.000e+0100.00putative plastid-lipid-associated protein chloropl... [more]
gi|553193025|ref|XP_005855694.1|1.281e-13780.08plastid-lipid associated protein pap, partial [Nan... [more]
gi|298711617|emb|CBJ32674.1|3.176e-2432.20plastid-lipid associated protein PAP / fibrillin f... [more]
gi|676390147|ref|XP_009038352.1|4.462e-2336.84hypothetical protein AURANDRAFT_28329, partial [Au... [more]
gi|551607758|ref|XP_005785179.1|6.341e-2333.04hypothetical protein EMIHUDRAFT_471624 [Emiliania ... [more]
gi|551605080|ref|XP_005783977.1|1.214e-2231.70hypothetical protein EMIHUDRAFT_231716 [Emiliania ... [more]
gi|922860410|gb|KOO28300.1|7.892e-2034.43putative plastid-lipid-associated protein chloropl... [more]
gi|703072316|ref|XP_010089253.1|4.536e-1933.50putative plastid-lipid-associated protein 11 [Moru... [more]
gi|297814333|ref|XP_002875050.1|4.575e-1932.57probable plastid-lipid-associated protein 11 isofo... [more]
gi|15236688|ref|NP_191914.1|3.107e-1832.18Plastid-lipid associated protein PAP / fibrillin f... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9958rna9958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications