EWM20770.1, cds9905 (CDS) Nannochloropsis gaditana

Overview
NameEWM20770.1
Unique Namecds9905
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:30844..30961 +
Alignment locationKK037258.1:31204..31382 +
Alignment locationKK037258.1:31689..31898 +
Alignment locationKK037258.1:32157..32372 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20770.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100356g3.1467.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:30844..30961 +
KK037258.1supercontigKK037258.1:31204..31382 +
KK037258.1supercontigKK037258.1:31689..31898 +
KK037258.1supercontigKK037258.1:32157..32372 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM20770.1 vs. NCBI_GenBank
Match: gi|585100649|gb|EWM20770.1| (hypothetical protein Naga_100356g3 [Nannochloropsis gaditana])

HSP 1 Score: 483.026 bits (1242), Expect = 2.157e-172
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 
Query:    1 MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVVLHLRAHQYQRRRHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLLRKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQTVRGKALVGWLIRRGVGERRGEGELEGGRERRVAMTRMEVNV 240
            MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVVLHLRAHQYQRRRHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLLRKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQTVRGKALVGWLIRRGVGERRGEGELEGGRERRVAMTRMEVNV
Sbjct:    1 MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVVLHLRAHQYQRRRHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLLRKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQTVRGKALVGWLIRRGVGERRGEGELEGGRERRVAMTRMEVNV 240
[Close]
BLAST of EWM20770.1 vs. NCBI_GenBank
Match: gi|553192163|ref|XP_005855525.1| (hypothetical protein NGA_0609200 [Nannochloropsis gaditana CCMP526] >gi|422293537|gb|EKU20837.1| hypothetical protein NGA_0609200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.438 bits (498), Expect = 4.627e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 
Query:    1 MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVV 99
            MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVV
Sbjct:    1 MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHARSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVV 99
The following BLAST results are available for this feature:
BLAST of EWM20770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100649|gb|EWM20770.1|2.157e-172100.00hypothetical protein Naga_100356g3 [Nannochloropsi... [more]
gi|553192163|ref|XP_005855525.1|4.627e-61100.00hypothetical protein NGA_0609200 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9936rna9936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications