EWM20774.1, cds9901 (CDS) Nannochloropsis gaditana

Overview
NameEWM20774.1
Unique Namecds9901
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:20314..20601 +
Alignment locationKK037258.1:20744..20825 +
Alignment locationKK037258.1:20965..21107 +
Alignment locationKK037258.1:21265..21366 +
Alignment locationKK037258.1:21558..21677 +
Alignment locationKK037258.1:21812..21934 +
Alignment locationKK037258.1:22095..22301 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20774.1
Producthypoxia up-regulated 1
Orig transcript idgnl|cribi|Naga_100672g1.8999.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:20314..20601 +
KK037258.1supercontigKK037258.1:20744..20825 +
KK037258.1supercontigKK037258.1:20965..21107 +
KK037258.1supercontigKK037258.1:21265..21366 +
KK037258.1supercontigKK037258.1:21558..21677 +
KK037258.1supercontigKK037258.1:21812..21934 +
KK037258.1supercontigKK037258.1:22095..22301 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0042221response to chemical
GO:0007165signal transduction
GO:0008219cell death
GO:0009628response to abiotic stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013126Hsp_70_fam
Homology
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|585100654|gb|EWM20774.1| (hypoxia up-regulated 1 [Nannochloropsis gaditana])

HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query:    1 MLPSPQEPLADSKLALVRSGSPLIPPSLWLDTRRFNTDKSTTSIIRVNMGAAAMIGGGRRNLRVTFTLLLLSFLASGALAGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRGSNEKRFAHFTVRAKVGSKRRERGRKGFPDAMPEGCLSEYGRRNRSRAFPIGLLIHVV 354
            MLPSPQEPLADSKLALVRSGSPLIPPSLWLDTRRFNTDKSTTSIIRVNMGAAAMIGGGRRNLRVTFTLLLLSFLASGALAGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRGSNEKRFAHFTVRAKVGSKRRERGRKGFPDAMPEGCLSEYGRRNRSRAFPIGLLIHVV
Sbjct:    1 MLPSPQEPLADSKLALVRSGSPLIPPSLWLDTRRFNTDKSTTSIIRVNMGAAAMIGGGRRNLRVTFTLLLLSFLASGALAGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRGSNEKRFAHFTVRAKVGSKRRERGRKGFPDAMPEGCLSEYGRRNRSRAFPIGLLIHVV 354          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|676391991|ref|XP_009039273.1| (hypothetical protein AURANDRAFT_38247 [Aureococcus anophagefferens] >gi|323450133|gb|EGB06016.1| hypothetical protein AURANDRAFT_38247 [Aureococcus anophagefferens])

HSP 1 Score: 238.039 bits (606), Expect = 9.563e-68
Identity = 122/236 (51.69%), Postives = 163/236 (69.07%), Query Frame = 0
Query:   83 IGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVA-LLGEAYFPTKVSYNESAGGLAI---------HHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRGSNEKRFAHFTV 308
            +G+D G+EFMKV+LV+PG  ++IVTN  SKRKTET ++F +GER +G+DAY +L+R+P+  YARL   LGR D HP+V  LL ++Y PT V +N + G LA+         +      ++ EELVAMILS+AKDIT+AYGG  VRD V+ VP+F TQ ER+ALL AAE+ADM++L LI+ NTAAAL F +D  YE+   I+FYN G+ S+Q SLVE S++    G   K    F V
Sbjct:    1 MGIDFGTEFMKVALVQPGAPLEIVTNHVSKRKTETSVAFVRGERLFGSDAYGMLSRKPEQAYARLTEFLGRSDSHPAVTTLLRKSYLPTTVRFNATRGALALGAPASTTQEYGGTWTEWTPEELVAMILSYAKDITRAYGGNVVRDCVITVPTFATQLEREALLVAAELADMRVLSLIEANTAAALQFGLDRKYEETKVILFYNAGSESVQASLVEYSTFPDKGGGKNKTVGQFEV 236          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|667482083|gb|AIG55617.1| (secreted protein, partial [Thraustotheca clavata])

HSP 1 Score: 220.32 bits (560), Expect = 9.237e-66
Identity = 116/251 (46.22%), Postives = 164/251 (65.34%), Query Frame = 0
Query:   66 FTLLLLSFLASGALAGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGE-AYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQ---PTNIIFYNLGASSLQVSLVEMSSYVTGRG-SNEKRFAHFTVRAK 311
            + L+LL+ +     A V GVD G EF K++LVKPG   +IVTN+HSKRKTET++SF   ER YGADA ++  RRP V Y+++   LG   DHP V+ L E  YFP  ++ N + G +A+ H++E  F +EEL AM+  HA+ IT  +   PV+D V+ VP ++ +P+RQA++DAAEIA +++L LIDENTAAAL   VD V  +   P  I+ +N+G++SLQVS+VE ++ V   G    K    F V +K
Sbjct:    3 WILVLLAAILGTVAASVAGVDFGGEFFKIALVKPGRPFEIVTNVHSKRKTETIVSFNGEERVYGADAMNIEVRRPQVAYSQIRRFLGTSMDHPMVSSLTENEYFPYTLTQNLTRGSVALKHNNEHVFLAEELAAMVFGHARQITNDFAEGPVKDWVITVPMYFAEPQRQAIIDAAEIAGVRVLSLIDENTAAALHHGVDYVGLENGAPERIMLFNMGSTSLQVSIVEYTTRVVPDGFKKNKTIVEFEVLSK 253          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|224007537|ref|XP_002292728.1| (heat shock protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971590|gb|EED89924.1| heat shock protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 229.565 bits (584), Expect = 1.095e-64
Identity = 117/231 (50.65%), Postives = 164/231 (71.00%), Query Frame = 0
Query:   81 GVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYG-GIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSY--VTGRGSNEKRFAHFTV 308
             ++GVDLGS +MKV+LV+  + ++IVTN+HSKRKTE M+ F  G R YGADA SL+ R+P +T +++  +LGR  +HPSV +L E ++     YNE+  G+ +  D    F+ EELVAM+L+HAKDIT+AYG   PV+D VL VP+FYTQ ER+ALLDAAE+A++ +L LI+EN+AAAL F +D +  +P   +FYN+GA S+QVS+V+ +SY     + S EK    F V
Sbjct:   23 AILGVDLGSLYMKVALVQRNSPLEIVTNLHSKRKTEQMVLFDAGSRFYGADASSLMARKPHLTPSQMSVMLGRDAEHPSVQVLKERHYQFTPKYNETRSGICLTIDGN-EFTPEELVAMVLTHAKDITQAYGVTTPVKDCVLTVPNFYTQHERRALLDAAELAELNVLALINENSAAALHFGIDRIDAEPQTYLFYNMGAGSVQVSVVKYTSYGRKESKYSKEKTVGAFEV 252          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|675211403|ref|XP_008914586.1| (hypothetical protein PPTG_18280 [Phytophthora parasitica INRA-310] >gi|568085199|gb|ETN00111.1| hypothetical protein PPTG_18280 [Phytophthora parasitica INRA-310])

HSP 1 Score: 217.624 bits (553), Expect = 3.960e-64
Identity = 112/228 (49.12%), Postives = 156/228 (68.42%), Query Frame = 0
Query:   80 AGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSV-ALLGEAYFPTKVSYNESAGG-LAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVY---EQPTNIIFYNLGASSLQVSLVEMSSYVTGRGSNEKR 302
            A V GVD G EF KV+LVKPGT  +IVTN+HSKRKTETM++F   ER YGADA ++  RRP   YA++  LLG     P V +LL E +FP ++  N + GG +++ H  + +F +EELVAM+ +HA+ IT  +    V+D VL VP+F++Q +RQA+LDAAEI+ +++L LI+ENTAAAL   V   Y   ++P  I+FYN+G++SLQVS+ E SS V   G  + +
Sbjct:   24 AIVAGVDFGGEFFKVALVKPGTPFEIVTNVHSKRKTETMVAFDGDERLYGADAATVGVRRPQTAYAQIRRLLGTTLSDPQVSSLLDEEHFPYELVQNATRGGTISLKHGKDQTFHAEELVAMVFAHARQITDTFAEAAVKDWVLTVPAFFSQAQRQAMLDAAEISGVRVLSLINENTAAALQLAVHASYDPEDKPKKILFYNMGSTSLQVSIAEFSSQVVPDGFKKNK 251          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|219129229|ref|XP_002184797.1| (protein heat shock protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403906|gb|EEC43856.1| protein heat shock protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 225.713 bits (574), Expect = 5.408e-63
Identity = 119/236 (50.42%), Postives = 164/236 (69.49%), Query Frame = 0
Query:   67 TLLLLSFLAS--GALAG--VIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGG------IPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSY 292
            +  L + LAS  G + G  ++GVDLGS +MKV+LV+ G+ ++IVTN+H+KRKTE MI F Q +R YGADA +LL R+   T + +  LLGR + HP+V +L E ++P +  YNE+  G+ +  D    F+ EELVAM+LSHA DI+ AY         P +D +L VPS+ TQPERQALLDAA +A++ +LGLIDENTA+AL + +D  +E P  IIFYN+GAS+LQVSL+   +Y
Sbjct:   14 SFCLWTCLASFSGTVEGRAILGVDLGSLYMKVALVQSGSPLEIVTNLHAKRKTEQMILFDQQQRFYGADASALLARKSTKTPSAMSVLLGRDEQHPTVRVLAERHYPVRPVYNETRAGVTLTVDG-VEFTPEELVAMVLSHAVDISVAYATEQGSTIAPPKDVMLTVPSYATQPERQALLDAAGLAELNVLGLIDENTASALHYAMDKSFETPQLIIFYNMGASALQVSLIRFFNY 248          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|669140066|ref|XP_008605601.1| (hypothetical protein SDRG_01828 [Saprolegnia diclina VS20] >gi|530742515|gb|EQC40757.1| hypothetical protein SDRG_01828 [Saprolegnia diclina VS20])

HSP 1 Score: 222.631 bits (566), Expect = 4.337e-62
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 0
Query:   80 AGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSVALLGE-AYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVYE-----QPTNIIFYNLGASSLQVSLVEMSSYVTGRG-SNEKRFAHFTVRAK 311
            A V GVD G EF K++LVKPG   +IVTN+HSKRKTET++SF   ER YGADA ++  RRP V Y+++   LG   DHP V+ L E  YFP  ++ N + G +A+ H  E +F +EEL AM+  HAK IT  +   PV+D V+ VP ++ +P+RQA++DAAEIA +++L LIDENTAAAL   VD  YE      P  I+ YN+G++SLQVS+VE  + V   G    K    F V AK
Sbjct:   20 ASVAGVDFGGEFFKIALVKPGRPFEIVTNVHSKRKTETIVSFNGDERVYGADAMNIEVRRPQVAYSQIRRFLGATVDHPLVSSLTENEYFPYTLTKNLTRGSVALQHSSEHTFHAEELAAMVFGHAKQITNDFAEAPVKDWVITVPMYFAEPQRQAIIDAAEIAGIRVLSLIDENTAAALHHAVD--YEAAEPNTPERIMLYNMGSTSLQVSIVEYKTRVVPDGFKKNKTIVEFDVLAK 256          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|673017744|ref|XP_008862833.1| (hypothetical protein H310_01496 [Aphanomyces invadans] >gi|574482036|gb|ETW09028.1| hypothetical protein H310_01496 [Aphanomyces invadans])

HSP 1 Score: 222.246 bits (565), Expect = 7.608e-62
Identity = 108/222 (48.65%), Postives = 157/222 (70.72%), Query Frame = 0
Query:   80 AGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSV-ALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAAL---LFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRG 297
            + + GVD G EF K++LVKPG   +IVTN+HSKRKTET++SF   ER +GADA ++  RRP + Y+++  LLG    HP V +++   YFP  +++N++ G +A+ HDD+ +F +EELVAM+ +HAK IT  +   PVRD V+ VPS++ + +RQA++DAAEIA +++L LIDENTAAAL   L +      +PT ++ YN+G++SLQVSLVE SS +   G
Sbjct:   25 SNLAGVDFGGEFFKIALVKPGKQFEIVTNVHSKRKTETIVSFNGEERLFGADAMNIEVRRPQMAYSQIRRLLGTTVTHPVVESMVKSEYFPYTLTHNDTRGSVALKHDDQFTFHAEELVAMVFTHAKTITNEFAESPVRDWVVTVPSYFVEAQRQAVIDAAEIAGIRVLSLIDENTAAALQHALAIETPQAGKPTRVLLYNMGSTSLQVSLVEYSSRIVPDG 246          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|673017736|ref|XP_008862829.1| (hypothetical protein H310_01493 [Aphanomyces invadans] >gi|574482032|gb|ETW09024.1| hypothetical protein H310_01493 [Aphanomyces invadans])

HSP 1 Score: 221.861 bits (564), Expect = 1.054e-61
Identity = 108/222 (48.65%), Postives = 157/222 (70.72%), Query Frame = 0
Query:   80 AGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSV-ALLGEAYFPTKVSYNESAGGLAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAAL---LFVVDNVYEQPTNIIFYNLGASSLQVSLVEMSSYVTGRG 297
            + + GVD G EF K++LVKPG   +IVTN+HSKRKTET++SF   ER +GADA ++  RRP + Y+++  LLG    HP V +++   YFP  +++N++ G +A+ HDD+ +F +EELVAM+ +HAK IT  +   PVRD V+ VPS++ + +RQA++DAAEIA +++L LIDENTAAAL   L +      +PT ++ YN+G++SLQVSLVE SS +   G
Sbjct:   25 SNLAGVDFGGEFFKIALVKPGKQFEIVTNVHSKRKTETIVSFNGEERLFGADAMNIEVRRPQMAYSQIRRLLGTTVTHPVVESMVKSEYFPYTLTHNDTRGSVALKHDDQFTFHAEELVAMVFTHAKTITNEFAESPVRDWVVTVPSYFVEAQRQAVIDAAEIAGIRVLSLIDENTAAALQHALAIETPQAGKPTRVLLYNMGSTSLQVSLVEYSSRIVPDG 246          
BLAST of EWM20774.1 vs. NCBI_GenBank
Match: gi|301097870|ref|XP_002898029.1| (hsp70-like protein [Phytophthora infestans T30-4] >gi|262106474|gb|EEY64526.1| hsp70-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 219.935 bits (559), Expect = 4.361e-61
Identity = 112/223 (50.22%), Postives = 155/223 (69.51%), Query Frame = 0
Query:   80 AGVIGVDLGSEFMKVSLVKPGTMMDIVTNIHSKRKTETMISFYQGERSYGADAYSLLTRRPDVTYARLPTLLGRHDDHPSV-ALLGEAYFPTKVSYNESAGG-LAIHHDDEASFSSEELVAMILSHAKDITKAYGGIPVRDAVLVVPSFYTQPERQALLDAAEIADMKILGLIDENTAAALLFVVDNVY---EQPTNIIFYNLGASSLQVSLVEMSSYVTGRG 297
            A V GVD G EF KV+LVKPGT  +IVTN+HSKRKTETM++F   ER YGADA ++  RRP   YA++  LLG     P V +LL E +FP ++  N + GG +++ H  E ++ +EELVAM+ +HA+ IT  +   PV+D VL VP+F++Q +RQA+LDAAEI+ +++L LI+ENTAAAL   V   Y   ++P  I+F+N+G++SLQVS+ E SS V   G
Sbjct:   24 AIVAGVDFGGEFFKVALVKPGTPFEIVTNVHSKRKTETMVAFDGDERLYGADAATVGVRRPQTAYAQIRRLLGTTLSDPQVSSLLDEEHFPYELIQNATRGGTISLKHGKEQTYHAEELVAMVFTHARQITDTFAEAPVKDWVLTVPTFFSQAQRQAMLDAAEISGVRVLSLINENTAAALQLAVHASYDPEDKPKKILFFNMGSTSLQVSIAEFSSQVVPDG 246          
The following BLAST results are available for this feature:
BLAST of EWM20774.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100654|gb|EWM20774.1|0.000e+0100.00hypoxia up-regulated 1 [Nannochloropsis gaditana][more]
gi|676391991|ref|XP_009039273.1|9.563e-6851.69hypothetical protein AURANDRAFT_38247 [Aureococcus... [more]
gi|667482083|gb|AIG55617.1|9.237e-6646.22secreted protein, partial [Thraustotheca clavata][more]
gi|224007537|ref|XP_002292728.1|1.095e-6450.65heat shock protein, partial [Thalassiosira pseudon... [more]
gi|675211403|ref|XP_008914586.1|3.960e-6449.12hypothetical protein PPTG_18280 [Phytophthora para... [more]
gi|219129229|ref|XP_002184797.1|5.408e-6350.42protein heat shock protein [Phaeodactylum tricornu... [more]
gi|669140066|ref|XP_008605601.1|4.337e-6248.95hypothetical protein SDRG_01828 [Saprolegnia dicli... [more]
gi|673017744|ref|XP_008862833.1|7.608e-6248.65hypothetical protein H310_01496 [Aphanomyces invad... [more]
gi|673017736|ref|XP_008862829.1|1.054e-6148.65hypothetical protein H310_01493 [Aphanomyces invad... [more]
gi|301097870|ref|XP_002898029.1|4.361e-6150.22hsp70-like protein [Phytophthora infestans T30-4] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9932rna9932Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications