EWM20784.1, cds9890 (CDS) Nannochloropsis gaditana

Overview
NameEWM20784.1
Unique Namecds9890
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:129256..129393 +
Alignment locationKK037257.1:129502..129732 +
Alignment locationKK037257.1:130201..130476 +
Alignment locationKK037257.1:130718..130828 +
Alignment locationKK037257.1:131318..131787 +
Alignment locationKK037257.1:131980..132127 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20784.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100423g1.2495.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:129256..129393 +
KK037257.1supercontigKK037257.1:129502..129732 +
KK037257.1supercontigKK037257.1:130201..130476 +
KK037257.1supercontigKK037257.1:130718..130828 +
KK037257.1supercontigKK037257.1:131318..131787 +
KK037257.1supercontigKK037257.1:131980..132127 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20784.1 vs. NCBI_GenBank
Match: gi|585100670|gb|EWM20784.1| (hypothetical protein Naga_100423g1 [Nannochloropsis gaditana])

HSP 1 Score: 917.916 bits (2371), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0 
Query:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV 457
            MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV
Sbjct:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV 457
[Close]
BLAST of EWM20784.1 vs. NCBI_GenBank
Match: gi|585100669|gb|EWM20783.1| (hypothetical protein Naga_100423g1 [Nannochloropsis gaditana])

HSP 1 Score: 911.753 bits (2355), Expect = 0.000e+0
Identity = 456/457 (99.78%), Postives = 456/457 (99.78%), Query Frame = 0 
Query:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV 457
            MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEE ARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV
Sbjct:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEE-ARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGIITHLRSLREIARKQHEKHRGDVRQRLLSGDDGEDAAWAVGRGAGKEGGREGEREGLRWIEHPTARLFWQKHFPGRPPAGGVSSIQSPPFEPLVHFPPTLPVKKNLSPPSPFPLLPRPFPLLSQTTRPCAGLVSWRRSRRSGVRTRTRRTNALKRLLFSRLHLYRPCPCAPPRLARGGQRCPGWKGEEKGLGKGWWPSRCTTV 456
[Close]
BLAST of EWM20784.1 vs. NCBI_GenBank
Match: gi|553189233|ref|XP_005854958.1| (hypothetical protein NGA_0379500, partial [Nannochloropsis gaditana CCMP526] >gi|422294098|gb|EKU21398.1| hypothetical protein NGA_0379500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 498.434 bits (1282), Expect = 1.548e-174
Identity = 252/256 (98.44%), Postives = 253/256 (98.83%), Query Frame = 0 
Query:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEAGII 256
            MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLE   +
Sbjct:    1 MSMMRSKSSSLAPPSTSALLFALLSQSMAVLRIIEATRAQDEIAEEKARLANEVAASAASALQAIEGVVDGGEHEEGAIFMGFASTGRETIRVPPAMAMPDAQEADTRKNGRDLSRLVMSVIKVCQRSISQLVPASQNPASSSSSLLSPFLHPIRERRKEEAGAPLPAMARSSDEGGSPSKEKSSGVATPLDLFGRRRVLAGREKEDAFHLVQLLECIARTRNILLKLKREEPNYFGVCAKEIYFREIRLLEVSFL 256
The following BLAST results are available for this feature:
BLAST of EWM20784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100670|gb|EWM20784.1|0.000e+0100.00hypothetical protein Naga_100423g1 [Nannochloropsi... [more]
gi|585100669|gb|EWM20783.1|0.000e+099.78hypothetical protein Naga_100423g1 [Nannochloropsi... [more]
gi|553189233|ref|XP_005854958.1|1.548e-17498.44hypothetical protein NGA_0379500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9921rna9921Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications