EWM20802.1, cds9871 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|553177694|ref|XP_005852488.1| (hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526] >gi|422296046|gb|EKU23345.1| hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526] >gi|585100701|gb|EWM20802.1| Rubredoxin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 305.064 bits (780), Expect = 4.880e-105 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 Query: 1 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI 149 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI Sbjct: 1 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI 149
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|223996257|ref|XP_002287802.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976918|gb|EED95245.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 147.902 bits (372), Expect = 6.390e-43 Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = 0 Query: 9 VLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLT------AMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144 ++ + + MA ++AF P P +++ R+ T++ P+S + G+ K A++ KYW+GEWVC DCGYIYN A+C GM FE+Q GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS G +A I FG++A Sbjct: 6 LIALIAAICMA-QTLAFAPSTPRAIVTQQRS-TIATPTSLNVFGKKKTQAQKEEEEALAAKYWQGEWVCKDCGYIYNRAECAGMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGLIATIVFGVWA 145
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|397632970|gb|EJK70775.1| (hypothetical protein THAOC_07837, partial [Thalassiosira oceanica]) HSP 1 Score: 141.354 bits (355), Expect = 2.823e-40 Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 0 Query: 10 LTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144 L + ++A S++ F P +S+ +LS R + A + YW+GEWVC DCGYIYN A+C M FE+Q GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS G A I FG++A Sbjct: 7 LLAILFCILASSALGFAPSAQRAVVSRPSTTSLSVFGKRKTEAQKAEEEAKAAMYWQGEWVCKDCGYIYNRAECANMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGLAATIAFGVWA 141
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1210514661|dbj|GAX26445.1| (hypothetical protein FisN_37Hu005 [Fistulifera solaris]) HSP 1 Score: 134.806 bits (338), Expect = 5.729e-38 Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 0 Query: 60 MSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144 ++ +YW+GEWVC DCGYIYN A+C GM FE+Q GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS G +A I FGI+A Sbjct: 41 VNSQYWQGEWVCKDCGYIYNRAECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGVIATIAFGIWA 125
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1072235937|gb|OEU20665.1| (hypothetical protein FRACYDRAFT_234296 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 132.88 bits (333), Expect = 6.556e-37 Identity = 70/141 (49.65%), Postives = 91/141 (64.54%), Query Frame = 0 Query: 12 FVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPS----GRSKGLTAMSGK----YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144 F L L ++ AF+ VRP+ S + ++ +S S+ S + +SK A + YWEGEWVC DCGYIYN A+C + FE+Q GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS G I FGI+A Sbjct: 12 FALLCLSVATTSAFV-VRPSSIASSITSSAVSRTSNTSLNVFGKKKSKAQKAEEAEKAAMYWEGEWVCKDCGYIYNRAECADLFFEEQTPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVALTIAFGIWA 151
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|298711432|emb|CBJ32572.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 2.393e-36 Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = 0 Query: 12 FVCLVL-MALSSVAFMPVRPALS----LSKMRAATLSGPSSRSP-------SGRSKGLTAMSGK-------YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAA 145 F LVL +A S F+P A S S+ A++ SS SP S G+ M+ K +WEGEWVCADCGYIY+ DCGG+ E+QK GF CPQC PRRRFAKKVG+++G+T DGGDAPIL+FS +G A + FG + A Sbjct: 5 FAFLVLCLAASVNGFVPAPAAFSKGQFASRAAASSQVARSSISPRTGVSSASNPGVGVMMMAAKAEEATRSFWEGEWVCADCGYIYDIDDCGGLYLEEQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLWATVAFGYWFA 157
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1129195721|gb|OLQ00018.1| (Polyubiquitin 11 [Symbiodinium microadriaticum]) HSP 1 Score: 117.087 bits (292), Expect = 1.431e-27 Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0 Query: 63 KYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKV----GDKIGVTNDGGDAPILVFSIV 132 +YWEGEW+CADCGYIYNE G M+FED + GFKCPQC+APRRRFA+K+ GDKIG T DGGD PI++F+ V Sbjct: 26 QYWEGEWICADCGYIYNERSFG-MKFEDLQQGFKCPQCAAPRRRFARKLGAAAGDKIGTTLDGGDTPIIIFTAV 98
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|873228271|emb|CEM16421.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 108.227 bits (269), Expect = 2.896e-27 Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 0 Query: 14 CLVLMALSSVAFMPVRPALSL-SKMRAATLSGPSSRSPSGRSKGLTAMSGK--YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSI 131 CL+L A + AF PA S + R + + R+P+ T ++ YW+GEWVCADCGYIY+ + G FEDQ GFKCPQC APRRRFAKKVG +G GGDAPI++FS Sbjct: 11 CLLLCASIAHAFTFSNPAASAGASSRLLPRNIIARRAPATALAAETTLTPPEGYWQGEWVCADCGYIYDPSLFGNKWFEDQGPGFKCPQCQAPRRRFAKKVGSVVGQKIGGGDAPIVIFSF 131
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1072228367|gb|OEU13104.1| (hypothetical protein FRACYDRAFT_190559, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 99.3673 bits (246), Expect = 1.430e-24 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0 Query: 66 EGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144 EGEWVC CGY YN +C + FE+Q GF CPQCS +R+AKK+G+ +G +DGGDAPIL+FS G I FGI+A Sbjct: 1 EGEWVCKVCGYSYNRGECASLFFEEQSAGFCCPQCSGSCQRYAKKIGNCVGTMHDGGDAPILIFSFGGVALTIAFGIWA 79
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1189386285|gb|OSX73403.1| (hypothetical protein BU14_0352s0022 [Porphyra umbilicalis]) HSP 1 Score: 92.8189 bits (229), Expect = 1.051e-21 Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0 Query: 43 SGPSSRSPSGRSKG----LTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALS 147 +G + +P + KG LT G ++ GE VC DCGY++ + ++FE+ +KCPQC+AP+RRFA+K GD I + + +APIL+FSI+G L + FG++AA S Sbjct: 8 NGAAEAAPKAKGKGKASTLTDADG-FFRGEHVCVDCGYVFKYSPKRKVQFEELPKDWKCPQCNAPKRRFARKAGDTIALDSGTSNAPILIFSILGLLGTLAFGVWAASS 115 The following BLAST results are available for this feature:
BLAST of EWM20802.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|