EWM20802.1, cds9871 (CDS) Nannochloropsis gaditana

Overview
NameEWM20802.1
Unique Namecds9871
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:91428..91670 -
Alignment locationKK037257.1:91070..91270 -
Alignment locationKK037257.1:90810..90815 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20802.1
ProductRubredoxin domain protein
Orig transcript idgnl|cribi|Naga_100935g2.5898.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:91428..91670 -
KK037257.1supercontigKK037257.1:91070..91270 -
KK037257.1supercontigKK037257.1:90810..90815 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005506iron ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024934Rubredoxin-like_dom
IPR024935Rubredoxin_dom
IPR004039Rubredoxin-type_fold
Homology
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|553177694|ref|XP_005852488.1| (hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526] >gi|422296046|gb|EKU23345.1| hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526] >gi|585100701|gb|EWM20802.1| Rubredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 305.064 bits (780), Expect = 4.880e-105
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI 149
            MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI
Sbjct:    1 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI 149          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|223996257|ref|XP_002287802.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976918|gb|EED95245.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 147.902 bits (372), Expect = 6.390e-43
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = 0
Query:    9 VLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLT------AMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144
            ++  +  + MA  ++AF P  P   +++ R+ T++ P+S +  G+ K         A++ KYW+GEWVC DCGYIYN A+C GM FE+Q  GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS  G +A I FG++A
Sbjct:    6 LIALIAAICMA-QTLAFAPSTPRAIVTQQRS-TIATPTSLNVFGKKKTQAQKEEEEALAAKYWQGEWVCKDCGYIYNRAECAGMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGLIATIVFGVWA 145          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|397632970|gb|EJK70775.1| (hypothetical protein THAOC_07837, partial [Thalassiosira oceanica])

HSP 1 Score: 141.354 bits (355), Expect = 2.823e-40
Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 0
Query:   10 LTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPSGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144
            L  +   ++A S++ F P      +S+    +LS    R    +     A +  YW+GEWVC DCGYIYN A+C  M FE+Q  GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS  G  A I FG++A
Sbjct:    7 LLAILFCILASSALGFAPSAQRAVVSRPSTTSLSVFGKRKTEAQKAEEEAKAAMYWQGEWVCKDCGYIYNRAECANMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGLAATIAFGVWA 141          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1210514661|dbj|GAX26445.1| (hypothetical protein FisN_37Hu005 [Fistulifera solaris])

HSP 1 Score: 134.806 bits (338), Expect = 5.729e-38
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 0
Query:   60 MSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144
            ++ +YW+GEWVC DCGYIYN A+C GM FE+Q  GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS  G +A I FGI+A
Sbjct:   41 VNSQYWQGEWVCKDCGYIYNRAECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGVIATIAFGIWA 125          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1072235937|gb|OEU20665.1| (hypothetical protein FRACYDRAFT_234296 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.88 bits (333), Expect = 6.556e-37
Identity = 70/141 (49.65%), Postives = 91/141 (64.54%), Query Frame = 0
Query:   12 FVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSPS----GRSKGLTAMSGK----YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144
            F  L L   ++ AF+ VRP+   S + ++ +S  S+ S +     +SK   A   +    YWEGEWVC DCGYIYN A+C  + FE+Q  GF+CPQCS PRRR+AKKVGD++G T DGGDAPIL+FS  G    I FGI+A
Sbjct:   12 FALLCLSVATTSAFV-VRPSSIASSITSSAVSRTSNTSLNVFGKKKSKAQKAEEAEKAAMYWEGEWVCKDCGYIYNRAECADLFFEEQTPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVALTIAFGIWA 151          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|298711432|emb|CBJ32572.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 2.393e-36
Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   12 FVCLVL-MALSSVAFMPVRPALS----LSKMRAATLSGPSSRSP-------SGRSKGLTAMSGK-------YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAA 145
            F  LVL +A S   F+P   A S     S+  A++    SS SP       S    G+  M+ K       +WEGEWVCADCGYIY+  DCGG+  E+QK GF CPQC  PRRRFAKKVG+++G+T DGGDAPIL+FS +G  A + FG + A
Sbjct:    5 FAFLVLCLAASVNGFVPAPAAFSKGQFASRAAASSQVARSSISPRTGVSSASNPGVGVMMMAAKAEEATRSFWEGEWVCADCGYIYDIDDCGGLYLEEQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLWATVAFGYWFA 157          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1129195721|gb|OLQ00018.1| (Polyubiquitin 11 [Symbiodinium microadriaticum])

HSP 1 Score: 117.087 bits (292), Expect = 1.431e-27
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0
Query:   63 KYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKV----GDKIGVTNDGGDAPILVFSIV 132
            +YWEGEW+CADCGYIYNE   G M+FED + GFKCPQC+APRRRFA+K+    GDKIG T DGGD PI++F+ V
Sbjct:   26 QYWEGEWICADCGYIYNERSFG-MKFEDLQQGFKCPQCAAPRRRFARKLGAAAGDKIGTTLDGGDTPIIIFTAV 98          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|873228271|emb|CEM16421.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.227 bits (269), Expect = 2.896e-27
Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 0
Query:   14 CLVLMALSSVAFMPVRPALSL-SKMRAATLSGPSSRSPSGRSKGLTAMSGK--YWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSI 131
            CL+L A  + AF    PA S  +  R    +  + R+P+      T ++    YW+GEWVCADCGYIY+ +  G   FEDQ  GFKCPQC APRRRFAKKVG  +G    GGDAPI++FS 
Sbjct:   11 CLLLCASIAHAFTFSNPAASAGASSRLLPRNIIARRAPATALAAETTLTPPEGYWQGEWVCADCGYIYDPSLFGNKWFEDQGPGFKCPQCQAPRRRFAKKVGSVVGQKIGGGDAPIVIFSF 131          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1072228367|gb|OEU13104.1| (hypothetical protein FRACYDRAFT_190559, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 99.3673 bits (246), Expect = 1.430e-24
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0
Query:   66 EGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYA 144
            EGEWVC  CGY YN  +C  + FE+Q  GF CPQCS   +R+AKK+G+ +G  +DGGDAPIL+FS  G    I FGI+A
Sbjct:    1 EGEWVCKVCGYSYNRGECASLFFEEQSAGFCCPQCSGSCQRYAKKIGNCVGTMHDGGDAPILIFSFGGVALTIAFGIWA 79          
BLAST of EWM20802.1 vs. NCBI_GenBank
Match: gi|1189386285|gb|OSX73403.1| (hypothetical protein BU14_0352s0022 [Porphyra umbilicalis])

HSP 1 Score: 92.8189 bits (229), Expect = 1.051e-21
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   43 SGPSSRSPSGRSKG----LTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALS 147
            +G +  +P  + KG    LT   G ++ GE VC DCGY++  +    ++FE+    +KCPQC+AP+RRFA+K GD I + +   +APIL+FSI+G L  + FG++AA S
Sbjct:    8 NGAAEAAPKAKGKGKASTLTDADG-FFRGEHVCVDCGYVFKYSPKRKVQFEELPKDWKCPQCNAPKRRFARKAGDTIALDSGTSNAPILIFSILGLLGTLAFGVWAASS 115          
The following BLAST results are available for this feature:
BLAST of EWM20802.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553177694|ref|XP_005852488.1|4.880e-105100.00hypothetical protein NGA_0717900 [Nannochloropsis ... [more]
gi|223996257|ref|XP_002287802.1|6.390e-4349.30predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397632970|gb|EJK70775.1|2.823e-4048.15hypothetical protein THAOC_07837, partial [Thalass... [more]
gi|1210514661|dbj|GAX26445.1|5.729e-3867.06hypothetical protein FisN_37Hu005 [Fistulifera sol... [more]
gi|1072235937|gb|OEU20665.1|6.556e-3749.65hypothetical protein FRACYDRAFT_234296 [Fragilario... [more]
gi|298711432|emb|CBJ32572.1|2.393e-3648.37conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129195721|gb|OLQ00018.1|1.431e-2767.57Polyubiquitin 11 [Symbiodinium microadriaticum][more]
gi|873228271|emb|CEM16421.1|2.896e-2748.76unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072228367|gb|OEU13104.1|1.430e-2455.70hypothetical protein FRACYDRAFT_190559, partial [F... [more]
gi|1189386285|gb|OSX73403.1|1.051e-2142.20hypothetical protein BU14_0352s0022 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9902rna9902Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications