EWM20825.1, cds9848 (CDS) Nannochloropsis gaditana

Overview
NameEWM20825.1
Unique Namecds9848
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:42298..42358 -
Alignment locationKK037257.1:41711..41773 -
Alignment locationKK037257.1:41335..41450 -
Alignment locationKK037257.1:41053..41136 -
Alignment locationKK037257.1:40753..40851 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20825.1
Productring-box protein
Orig transcript idgnl|cribi|Naga_100314g1.5179.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:42298..42358 -
KK037257.1supercontigKK037257.1:41711..41773 -
KK037257.1supercontigKK037257.1:41335..41450 -
KK037257.1supercontigKK037257.1:41053..41136 -
KK037257.1supercontigKK037257.1:40753..40851 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|585100749|gb|EWM20825.1| (ring-box protein [Nannochloropsis gaditana])

HSP 1 Score: 290.426 bits (742), Expect = 1.691e-99
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:    1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
            MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|298714696|emb|CBJ27621.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 200.675 bits (509), Expect = 4.114e-64
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 0
Query:   39 GAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139
            G  APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +L 
Sbjct:   27 GQVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA 127          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1210521580|dbj|GAX19570.1| (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 195.667 bits (496), Expect = 2.631e-62
Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 0
Query:   11 MDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
            M E   VP    +E+   L        S  +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:    1 MAEVADVPMEDASEQQQVL--------SKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 122          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1210531713|dbj|GAX09680.1| (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 195.282 bits (495), Expect = 4.556e-62
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0
Query:   31 GSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
             S     S  +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:   12 ASEQQVLSKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 121          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|219125612|ref|XP_002183070.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405345|gb|EEC45288.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 194.512 bits (493), Expect = 1.354e-61
Identity = 92/129 (71.32%), Postives = 101/129 (78.29%), Query Frame = 0
Query:   16 PVPHGGGAEEGSGLGGSTSGST----SGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
            PV      E    + G+ S       +  +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LG+
Sbjct:    6 PVEDSKDVEMEETVEGADSEEVVKPKASGSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGL 134          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1072234727|gb|OEU19456.1| (ring-box protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 193.741 bits (491), Expect = 1.729e-61
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0
Query:   39 GAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139
            G+AAPRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  L 
Sbjct:   26 GSAAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLA 126          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|224002296|ref|XP_002290820.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974242|gb|EED92572.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 186.808 bits (473), Expect = 8.775e-59
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0
Query:   40 AAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 135
              APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPGY
Sbjct:   23 TTAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGY 118          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|553182429|ref|XP_005853728.1| (RING-box protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295331|gb|EKU22630.1| RING-box protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.111 bits (466), Expect = 3.448e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query:   55 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
            MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 86          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|676383527|ref|XP_009035042.1| (hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens] >gi|323454355|gb|EGB10225.1| hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens])

HSP 1 Score: 178.718 bits (452), Expect = 9.443e-56
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 0
Query:   44 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSH------VFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139
            R   ++WNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC H      VFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +LG
Sbjct:    2 RTATRRWNAVCMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHARPPAQVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLG 103          
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|397638657|gb|EJK73162.1| (hypothetical protein THAOC_05231, partial [Thalassiosira oceanica])

HSP 1 Score: 177.563 bits (449), Expect = 1.923e-54
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0
Query:   44 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 135
            RFEIKKWNAV MWSWDICA+ CAICRN+LNEPSIEYQANPS  N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPG+
Sbjct:   70 RFEIKKWNAVAMWSWDICAEHCAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGF 161          
The following BLAST results are available for this feature:
BLAST of EWM20825.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100749|gb|EWM20825.1|1.691e-99100.00ring-box protein [Nannochloropsis gaditana][more]
gi|298714696|emb|CBJ27621.1|4.114e-6490.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210521580|dbj|GAX19570.1|2.631e-6273.08RING-box protein 1 [Fistulifera solaris][more]
gi|1210531713|dbj|GAX09680.1|4.556e-6281.82RING-box protein 1 [Fistulifera solaris][more]
gi|219125612|ref|XP_002183070.1|1.354e-6171.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072234727|gb|OEU19456.1|1.729e-6187.13ring-box protein [Fragilariopsis cylindrus CCMP110... [more]
gi|224002296|ref|XP_002290820.1|8.775e-5987.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|553182429|ref|XP_005853728.1|3.448e-58100.00RING-box protein 1 [Nannochloropsis gaditana CCMP5... [more]
gi|676383527|ref|XP_009035042.1|9.443e-5682.35hypothetical protein AURANDRAFT_22764, partial [Au... [more]
gi|397638657|gb|EJK73162.1|1.923e-5484.78hypothetical protein THAOC_05231, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9879rna9879Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications