EWM20828.1, cds9842 (CDS) Nannochloropsis gaditana

Overview
NameEWM20828.1
Unique Namecds9842
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:28683..29138 +
Alignment locationKK037257.1:29264..29383 +
Alignment locationKK037257.1:29730..29849 +
Alignment locationKK037257.1:30041..30124 +
Alignment locationKK037257.1:30693..30813 +
Alignment locationKK037257.1:31125..31162 +
Alignment locationKK037257.1:31331..31594 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20828.1
ProductABC transporter, ATPase, putative
Orig transcript idgnl|cribi|Naga_100314g6.5182.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:28683..29138 +
KK037257.1supercontigKK037257.1:29264..29383 +
KK037257.1supercontigKK037257.1:29730..29849 +
KK037257.1supercontigKK037257.1:30041..30124 +
KK037257.1supercontigKK037257.1:30693..30813 +
KK037257.1supercontigKK037257.1:31125..31162 +
KK037257.1supercontigKK037257.1:31331..31594 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019195ABC_ATPase_put
Homology
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|585100752|gb|EWM20828.1| (ABC transporter, ATPase, putative [Nannochloropsis gaditana])

HSP 1 Score: 825.469 bits (2131), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400
            MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR
Sbjct:    1 MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|585100751|gb|EWM20827.1| (ABC transporter, ATPase, putative [Nannochloropsis gaditana])

HSP 1 Score: 597.045 bits (1538), Expect = 0.000e+0
Identity = 289/290 (99.66%), Postives = 290/290 (100.00%), Query Frame = 0
Query:  111 QVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400
            +VGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR
Sbjct:  128 EVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 417          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|695405057|ref|XP_009523698.1| (hypothetical protein PHYSODRAFT_259448, partial [Phytophthora sojae] >gi|348681165|gb|EGZ20981.1| hypothetical protein PHYSODRAFT_259448, partial [Phytophthora sojae])

HSP 1 Score: 189.119 bits (479), Expect = 3.214e-51
Identity = 108/225 (48.00%), Postives = 133/225 (59.11%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMD 282
            S  + +LPF Q   R      S + SQ A  V                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KV+ALYTQ G+SS+LVIGGAGDYF VAD VIMMD+Y P D TV AK IA ++      +     FG    R+P+       GKVV+RG  K+QYGE D+DL+ VEQLVE      +R +     KA+  MD
Sbjct:  318 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVRALYTQRGVSSVLVIGGAGDYFSVADQVIMMDSYEPRDVTVEAKKIASEHVEIRQDA----EFGGFKPRIPLSRGFEVNGKVVSRGLGKIQYGEVDLDLAAVEQLVEPSQ---VRTIADAIQKARSFMD 517          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|970661156|gb|KUF98647.1| (Calreticulin [Phytophthora nicotianae])

HSP 1 Score: 186.808 bits (473), Expect = 6.485e-51
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260
            S  + +LPF Q   R      S + SQ A  +                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T  AK IA ++    G       FG    R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE
Sbjct:  209 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 389          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|1214694001|gb|OWZ08166.1| (hypothetical protein PHMEG_00019335 [Phytophthora megakarya])

HSP 1 Score: 189.119 bits (479), Expect = 1.802e-50
Identity = 108/225 (48.00%), Postives = 133/225 (59.11%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMD 282
            S  + +LPF Q   R      S + SQ A  V                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KV+ALYTQ G+SS+LVIGGAGDYF VAD VIMMD+Y P D T  AK IA ++      S     FG    R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE    + +R +     KA+  MD
Sbjct:  366 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVRALYTQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEHGEIRQDS----EFGGFKARIPLSRGFEVNGKVVSRGLVKIQYGEVDLDLSAVEQIVEP---SQVRTIADAIQKARSFMD 565          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|953491712|emb|CEG45721.1| (P-loop containing nucleoside triphosphate hydrolase [Plasmopara halstedii])

HSP 1 Score: 188.348 bits (477), Expect = 1.912e-50
Identity = 98/187 (52.41%), Postives = 129/187 (68.98%), Query Frame = 0
Query:  111 QVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQ 297
            +VGA  LL+DEDTCATNFMIRD +MQ LV+K+KEPITPF++KVQAL+   G+SS+LVIGGAGDYF VAD VIMMD Y P + T  AK IA +Y   +        FG    R+P+      +GKVVARG DK+QYGE D+DLS VEQ+VE    + +R +     KA+  M  DG+ + M+V+++++
Sbjct:  376 EVGATTLLIDEDTCATNFMIRDWKMQQLVAKEKEPITPFISKVQALFKGLGVSSILVIGGAGDYFSVADHVIMMDAYEPRNVTNEAKTIASKYGEISQDVV----FGDFKSRIPLSQGFEAKGKVVARGLDKIQYGEVDLDLSAVEQIVEP---SQVRTIADALQKAQSYM--DGKRTLMEVLTKLE 553          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|301121294|ref|XP_002908374.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103405|gb|EEY61457.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 188.348 bits (477), Expect = 2.268e-50
Identity = 109/240 (45.42%), Postives = 144/240 (60.00%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQ 297
            S  + +LPF Q   R      S + SQ A  V                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD V+MMD+Y P D T  AK IA+++    G       FG  + R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE    + +R +     KA+  M  DG+ +  +V+++++
Sbjct:  350 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLVDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVVMMDSYEPRDVTAEAKKIANEH----GEIRQDAEFGGYTPRIPLSRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVEP---SQVRTIADAIQKARSFM--DGKRTLEEVLAKLE 562          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|675163719|ref|XP_008890744.1| (hypothetical protein PPTG_00921 [Phytophthora parasitica INRA-310] >gi|568110094|gb|ETN24701.1| hypothetical protein PPTG_00921 [Phytophthora parasitica INRA-310])

HSP 1 Score: 187.193 bits (474), Expect = 1.007e-49
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260
            S  + +LPF Q   R      S + SQ A  +                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T  AK IA ++    G       FG    R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE
Sbjct:  371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|970634709|gb|KUF79839.1| (hypothetical protein AM587_10014667 [Phytophthora nicotianae] >gi|970644553|gb|KUF85351.1| hypothetical protein AM587_10015174 [Phytophthora nicotianae])

HSP 1 Score: 186.808 bits (473), Expect = 1.018e-49
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260
            S  + +LPF Q   R      S + SQ A  +                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T  AK IA ++    G       FG    R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE
Sbjct:  371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551          
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|675163721|ref|XP_008890745.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568110095|gb|ETN24702.1| hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 186.808 bits (473), Expect = 1.158e-49
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260
            S  + +LPF Q   R      S + SQ A  +                     +VGA  LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T  AK IA ++    G       FG    R+P+       GKVV+RG  K+QYGE D+DLS VEQ+VE
Sbjct:  371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551          
The following BLAST results are available for this feature:
BLAST of EWM20828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100752|gb|EWM20828.1|0.000e+0100.00ABC transporter, ATPase, putative [Nannochloropsis... [more]
gi|585100751|gb|EWM20827.1|0.000e+099.66ABC transporter, ATPase, putative [Nannochloropsis... [more]
gi|695405057|ref|XP_009523698.1|3.214e-5148.00hypothetical protein PHYSODRAFT_259448, partial [P... [more]
gi|970661156|gb|KUF98647.1|6.485e-5150.25Calreticulin [Phytophthora nicotianae][more]
gi|1214694001|gb|OWZ08166.1|1.802e-5048.00hypothetical protein PHMEG_00019335 [Phytophthora ... [more]
gi|953491712|emb|CEG45721.1|1.912e-5052.41P-loop containing nucleoside triphosphate hydrolas... [more]
gi|301121294|ref|XP_002908374.1|2.268e-5045.42conserved hypothetical protein [Phytophthora infes... [more]
gi|675163719|ref|XP_008890744.1|1.007e-4950.25hypothetical protein PPTG_00921 [Phytophthora para... [more]
gi|970634709|gb|KUF79839.1|1.018e-4950.25hypothetical protein AM587_10014667 [Phytophthora ... [more]
gi|675163721|ref|XP_008890745.1|1.158e-4950.25hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9873rna9873Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications