EWM20847.1, cds9826 (CDS) Nannochloropsis gaditana

Overview
NameEWM20847.1
Unique Namecds9826
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:278598..278608 -
Alignment locationKK037256.1:277856..278298 -
Alignment locationKK037256.1:277435..277680 -
Alignment locationKK037256.1:277225..277293 -
Alignment locationKK037256.1:276457..276698 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20847.1
Productproline glycine betaine transporter
Orig transcript idgnl|cribi|Naga_100496g3.5228.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:278598..278608 -
KK037256.1supercontigKK037256.1:277856..278298 -
KK037256.1supercontigKK037256.1:277435..277680 -
KK037256.1supercontigKK037256.1:277225..277293 -
KK037256.1supercontigKK037256.1:276457..276698 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR005828Sub_transporter
Homology
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|585100783|gb|EWM20847.1| (proline glycine betaine transporter [Nannochloropsis gaditana])

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query:    1 MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV 336
            MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV
Sbjct:    1 MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV 336          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|224005208|ref|XP_002296255.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209586287|gb|ACI64972.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.168 bits (300), Expect = 1.141e-29
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVF 114
            DF+ +G+F++ +G  FFPP+      +I SFAVF GAF  RPIGG+  G++GDTY  + AL +S+ LMA  T  +G LP Y  +  LS +LLT++RLLQG SVGGQL+ ++VF
Sbjct:   25 DFAVFGYFSDVLGDVFFPPNQDGHAAIIESFAVFGGAFFMRPIGGMMMGYIGDTYGSRKALTISIFLMAFPTFAMGCLPGYERVGSLSIVLLTIVRLLQGLSVGGQLISSLVF 137          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|569430822|gb|ETO33091.1| (major facilitator superfamily protein [Reticulomyxa filosa])

HSP 1 Score: 119.013 bits (297), Expect = 4.081e-29
Identity = 61/115 (53.04%), Postives = 87/115 (75.65%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVA 116
            DFS +GF A++I   FFP   +S V+L+ ++ VF+GAF+ RP+GG+ FG +GD Y +K AL LS+ +M +AT  +G LP Y +I I +P+LLT+LRL+QGFSVGGQLVG+M+F+ 
Sbjct:   31 DFSVFGFLAKQISVNFFPKGEAS-VQLLATYGVFAGAFVARPLGGIVFGVIGDKYGRKQALQLSMLVMFVATLIMGCLPTYHTIGIGAPVLLTILRLIQGFSVGGQLVGSMLFLV 144          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551574827|ref|XP_005773157.1| (hypothetical protein EMIHUDRAFT_123894, partial [Emiliania huxleyi CCMP1516] >gi|485624725|gb|EOD20728.1| hypothetical protein EMIHUDRAFT_123894, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 125.176 bits (313), Expect = 4.826e-29
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119
            DF+ YG FA +IG AFFPP  S T  LI+++++F+GAF  RP+GG+FFG +GDT  ++ AL+ ++ LMA  T  +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+    A
Sbjct:   59 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 176          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|1047832715|ref|WP_065761237.1| (MFS transporter [Pseudomonas sp. WCHP16])

HSP 1 Score: 125.176 bits (313), Expect = 9.155e-29
Identity = 85/269 (31.60%), Postives = 136/269 (50.56%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDEN-----PIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSV 265
            D++AYG+ A  I   FFP +  +T  L+ +FAVF+ +F+ RP+GGL +G  GD Y +++AL  S+ +M+++T  +G LP Y  I + +P LL L+RL+QGFS  G+  G   F+A +A Q    L +S    S+        + + G +G L +   +     V  +  +P          VG    +S Q  P+  + E R E++      PI  +   H   +++GIGVT L     Y    +MPTYL+     +   +    TVS+
Sbjct:   41 DYAAYGYLATVIAATFFPQTDKAT-GLLATFAVFALSFIVRPLGGLVWGHFGDKYGRRNALSYSILIMSISTFCIGVLPTYGHIGLWAPALLLLIRLVQGFSASGEYAGASAFLAEYAPQGKRGLYTSIVPASTAAGLLFGAAFVAGLHGLLSSEDMQSWGWRVPFLLAAPF-------GLVGRYIRMSLQDTPKFLEMEQRLENKECATAAPIRELLTVHRRSVIIGIGVTCLNAVAFYLLLSYMPTYLSTEMGMSESDSFIASTVSL 301          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551559389|ref|XP_005766622.1| (hypothetical protein EMIHUDRAFT_246404 [Emiliania huxleyi CCMP1516] >gi|485616960|gb|EOD14193.1| hypothetical protein EMIHUDRAFT_246404 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 126.331 bits (316), Expect = 1.077e-28
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119
            DF+ YG FA +IG AFFPP  S T  LI+++++F+GAF  RP+GG+FFG +GDT  ++ AL+ ++ LMA  T  +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+    A
Sbjct:   66 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 183          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551599432|ref|XP_005781551.1| (hypothetical protein EMIHUDRAFT_234052 [Emiliania huxleyi CCMP1516] >gi|485634346|gb|EOD29122.1| hypothetical protein EMIHUDRAFT_234052 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 125.176 bits (313), Expect = 1.446e-28
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119
            DF+ YG FA +IG AFFPP  S T  LI+++++F+GAF  RP+GG+FFG +GDT  ++ AL+ ++ LMA  T  +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+    A
Sbjct:   66 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 183          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|955298118|ref|WP_058098991.1| (MFS transporter [Paracoccus sp. MKU1] >gi|954162695|gb|KRW94794.1| MFS transporter [Paracoccus sp. MKU1])

HSP 1 Score: 123.25 bits (308), Expect = 4.173e-28
Identity = 88/300 (29.33%), Postives = 147/300 (49.00%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQG---FYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDE-NPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMG 297
            D+++YG+FA  I  AFFP   + T  L+ +FAVF+ +F+ RP+GG+ +G +GD   ++ AL  S+ +M+ ATT +  LP Y+ I +L+P+LL L+R++QGFS  G+  G   F+A ++       P+      +   P+   + L         L A  TE Q  +     P  L     P   +G    +  +  P+ ++ E     E  P+  +F  H  +I +  GVT L   G Y    +MPTYL+         A    ++S+ +   +    G+  + L   TAL+++  L +G
Sbjct:   44 DYASYGYFATVIAHAFFP-EIAPTSALLATFAVFAISFIIRPVGGIIWGAIGDRVGRRTALSWSILIMSGATTVIALLPSYNQIGMLAPVLLLLVRMVQGFSAAGEYAGATSFIAEYS-------PTHRRGLYTSIVPASTAAGLLAGSLMSAGLFALLTEAQMQSYGWRIPFLL---ALPLGFIGLYIRLRLEDTPKFRELEKTHHVEATPVRELFRNHRRQIAIAFGVTCLNAVGFYLILSYMPTYLSTEMGMGKAQAFLATSISLASYIFLIFLMGMLSDRLGRKTALITASVLFIG 332          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|1178516771|ref|WP_083036398.1| (MFS transporter [Mycobacterium algericum] >gi|1177016030|gb|OQZ99290.1| MFS transporter [Mycobacterium algericum DSM 45454])

HSP 1 Score: 122.094 bits (305), Expect = 1.308e-27
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119
            DF  YGF A  + Q F+P  +SS V LI +F   + AF  RP GG+FFG LGD   +K  L++++SLMA+ TT  G LP Y +I I +PILL + +L+QGFS GG+ VG M +V+ HA
Sbjct:   18 DFGIYGFLATTLAQVFYPGDSSSAVGLIATFGTLAAAFAVRPFGGIFFGALGDRIGRKKVLIMTVSLMAIGTTITGLLPSYEAIGIWAPILLIITKLMQGFSTGGEYVGAMTYVSEHA 135          
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|503594287|ref|WP_013828363.1| (MFS transporter [Mycobacterium sinense] >gi|333486035|gb|AEF35427.1| integral membrane transport protein [Mycobacterium sinense])

HSP 1 Score: 121.709 bits (304), Expect = 1.348e-27
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
Query:    2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119
            DF  YGF A  + Q F+P  +SS V LI +F   + AF  RP GG+FFG LGD   +K  L++++SLMA+ TT  G LP Y +I I +PILL + +L+QGFS GG+ VG M +V+ HA
Sbjct:   18 DFGIYGFLATTLAQVFYPGDSSSAVGLIATFGTLAAAFAVRPFGGIFFGALGDRIGRKKVLIMTVSLMAIGTTITGLLPSYEAIGIWAPILLIITKLMQGFSTGGEYVGAMTYVSEHA 135          
The following BLAST results are available for this feature:
BLAST of EWM20847.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100783|gb|EWM20847.1|0.000e+0100.00proline glycine betaine transporter [Nannochlorops... [more]
gi|224005208|ref|XP_002296255.1|1.141e-2950.44predicted protein, partial [Thalassiosira pseudona... [more]
gi|569430822|gb|ETO33091.1|4.081e-2953.04major facilitator superfamily protein [Reticulomyx... [more]
gi|551574827|ref|XP_005773157.1|4.826e-2949.15hypothetical protein EMIHUDRAFT_123894, partial [E... [more]
gi|1047832715|ref|WP_065761237.1|9.155e-2931.60MFS transporter [Pseudomonas sp. WCHP16][more]
gi|551559389|ref|XP_005766622.1|1.077e-2849.15hypothetical protein EMIHUDRAFT_246404 [Emiliania ... [more]
gi|551599432|ref|XP_005781551.1|1.446e-2849.15hypothetical protein EMIHUDRAFT_234052 [Emiliania ... [more]
gi|955298118|ref|WP_058098991.1|4.173e-2829.33MFS transporter [Paracoccus sp. MKU1] >gi|95416269... [more]
gi|1178516771|ref|WP_083036398.1|1.308e-2749.15MFS transporter [Mycobacterium algericum] >gi|1177... [more]
gi|503594287|ref|WP_013828363.1|1.348e-2749.15MFS transporter [Mycobacterium sinense] >gi|333486... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9857rna9857Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications