EWM20847.1, cds9826 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|585100783|gb|EWM20847.1| (proline glycine betaine transporter [Nannochloropsis gaditana]) HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0 Query: 1 MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV 336 MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV Sbjct: 1 MDFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDENPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMGWRPTGIVARRKRRGRNAWKALMLAMKSMATTCPAARAEV 336
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|224005208|ref|XP_002296255.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209586287|gb|ACI64972.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 120.168 bits (300), Expect = 1.141e-29 Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVF 114 DF+ +G+F++ +G FFPP+ +I SFAVF GAF RPIGG+ G++GDTY + AL +S+ LMA T +G LP Y + LS +LLT++RLLQG SVGGQL+ ++VF Sbjct: 25 DFAVFGYFSDVLGDVFFPPNQDGHAAIIESFAVFGGAFFMRPIGGMMMGYIGDTYGSRKALTISIFLMAFPTFAMGCLPGYERVGSLSIVLLTIVRLLQGLSVGGQLISSLVF 137
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|569430822|gb|ETO33091.1| (major facilitator superfamily protein [Reticulomyxa filosa]) HSP 1 Score: 119.013 bits (297), Expect = 4.081e-29 Identity = 61/115 (53.04%), Postives = 87/115 (75.65%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVA 116 DFS +GF A++I FFP +S V+L+ ++ VF+GAF+ RP+GG+ FG +GD Y +K AL LS+ +M +AT +G LP Y +I I +P+LLT+LRL+QGFSVGGQLVG+M+F+ Sbjct: 31 DFSVFGFLAKQISVNFFPKGEAS-VQLLATYGVFAGAFVARPLGGIVFGVIGDKYGRKQALQLSMLVMFVATLIMGCLPTYHTIGIGAPVLLTILRLIQGFSVGGQLVGSMLFLV 144
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551574827|ref|XP_005773157.1| (hypothetical protein EMIHUDRAFT_123894, partial [Emiliania huxleyi CCMP1516] >gi|485624725|gb|EOD20728.1| hypothetical protein EMIHUDRAFT_123894, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 125.176 bits (313), Expect = 4.826e-29 Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119 DF+ YG FA +IG AFFPP S T LI+++++F+GAF RP+GG+FFG +GDT ++ AL+ ++ LMA T +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+ A Sbjct: 59 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 176
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|1047832715|ref|WP_065761237.1| (MFS transporter [Pseudomonas sp. WCHP16]) HSP 1 Score: 125.176 bits (313), Expect = 9.155e-29 Identity = 85/269 (31.60%), Postives = 136/269 (50.56%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQGFYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDEN-----PIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSV 265 D++AYG+ A I FFP + +T L+ +FAVF+ +F+ RP+GGL +G GD Y +++AL S+ +M+++T +G LP Y I + +P LL L+RL+QGFS G+ G F+A +A Q L +S S+ + + G +G L + + V + +P VG +S Q P+ + E R E++ PI + H +++GIGVT L Y +MPTYL+ + + TVS+ Sbjct: 41 DYAAYGYLATVIAATFFPQTDKAT-GLLATFAVFALSFIVRPLGGLVWGHFGDKYGRRNALSYSILIMSISTFCIGVLPTYGHIGLWAPALLLLIRLVQGFSASGEYAGASAFLAEYAPQGKRGLYTSIVPASTAAGLLFGAAFVAGLHGLLSSEDMQSWGWRVPFLLAAPF-------GLVGRYIRMSLQDTPKFLEMEQRLENKECATAAPIRELLTVHRRSVIIGIGVTCLNAVAFYLLLSYMPTYLSTEMGMSESDSFIASTVSL 301
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551559389|ref|XP_005766622.1| (hypothetical protein EMIHUDRAFT_246404 [Emiliania huxleyi CCMP1516] >gi|485616960|gb|EOD14193.1| hypothetical protein EMIHUDRAFT_246404 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 126.331 bits (316), Expect = 1.077e-28 Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119 DF+ YG FA +IG AFFPP S T LI+++++F+GAF RP+GG+FFG +GDT ++ AL+ ++ LMA T +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+ A Sbjct: 66 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 183
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|551599432|ref|XP_005781551.1| (hypothetical protein EMIHUDRAFT_234052 [Emiliania huxleyi CCMP1516] >gi|485634346|gb|EOD29122.1| hypothetical protein EMIHUDRAFT_234052 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 125.176 bits (313), Expect = 1.446e-28 Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119 DF+ YG FA +IG AFFPP S T LI+++++F+GAF RP+GG+FFG +GDT ++ AL+ ++ LMA T +G LP Y+ I I SP+LL L+R+LQG + GG+L G +V+ A Sbjct: 66 DFAVYGIFASDIGNAFFPPEDSPTTALIKTYSIFAGAFFIRPLGGIFFGHIGDTLGREVALLFTIMLMATPTLVIGLLPTYTEIGIASPLLLALMRMLQGLAAGGELPGALVYAVESA 183
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|955298118|ref|WP_058098991.1| (MFS transporter [Paracoccus sp. MKU1] >gi|954162695|gb|KRW94794.1| MFS transporter [Paracoccus sp. MKU1]) HSP 1 Score: 123.25 bits (308), Expect = 4.173e-28 Identity = 88/300 (29.33%), Postives = 147/300 (49.00%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHAFQPPPPLPSSSSSGSSPFRPSPPPSSLQG---FYGDLRASSTEGQHLAVDLVAPSPLPPTGSPHADVGPPSGISTQAAPRDKDREDREEDE-NPIGAVFHEHLLEIVLGIGVTALWCGGVYQCYIWMPTYLTVLAPHAPVPALFGGTVSVVATALVKTNGGLGPEWLLMGTALLSSGCLVMG 297 D+++YG+FA I AFFP + T L+ +FAVF+ +F+ RP+GG+ +G +GD ++ AL S+ +M+ ATT + LP Y+ I +L+P+LL L+R++QGFS G+ G F+A ++ P+ + P+ + L L A TE Q + P L P +G + + P+ ++ E E P+ +F H +I + GVT L G Y +MPTYL+ A ++S+ + + G+ + L TAL+++ L +G Sbjct: 44 DYASYGYFATVIAHAFFP-EIAPTSALLATFAVFAISFIIRPVGGIIWGAIGDRVGRRTALSWSILIMSGATTVIALLPSYNQIGMLAPVLLLLVRMVQGFSAAGEYAGATSFIAEYS-------PTHRRGLYTSIVPASTAAGLLAGSLMSAGLFALLTEAQMQSYGWRIPFLL---ALPLGFIGLYIRLRLEDTPKFRELEKTHHVEATPVRELFRNHRRQIAIAFGVTCLNAVGFYLILSYMPTYLSTEMGMGKAQAFLATSISLASYIFLIFLMGMLSDRLGRKTALITASVLFIG 332
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|1178516771|ref|WP_083036398.1| (MFS transporter [Mycobacterium algericum] >gi|1177016030|gb|OQZ99290.1| MFS transporter [Mycobacterium algericum DSM 45454]) HSP 1 Score: 122.094 bits (305), Expect = 1.308e-27 Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119 DF YGF A + Q F+P +SS V LI +F + AF RP GG+FFG LGD +K L++++SLMA+ TT G LP Y +I I +PILL + +L+QGFS GG+ VG M +V+ HA Sbjct: 18 DFGIYGFLATTLAQVFYPGDSSSAVGLIATFGTLAAAFAVRPFGGIFFGALGDRIGRKKVLIMTVSLMAIGTTITGLLPSYEAIGIWAPILLIITKLMQGFSTGGEYVGAMTYVSEHA 135
BLAST of EWM20847.1 vs. NCBI_GenBank
Match: gi|503594287|ref|WP_013828363.1| (MFS transporter [Mycobacterium sinense] >gi|333486035|gb|AEF35427.1| integral membrane transport protein [Mycobacterium sinense]) HSP 1 Score: 121.709 bits (304), Expect = 1.348e-27 Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0 Query: 2 DFSAYGFFAEEIGQAFFPPSTSSTVRLIRSFAVFSGAFLFRPIGGLFFGWLGDTYSKKHALVLSLSLMALATTGVGFLPPYSSIHILSPILLTLLRLLQGFSVGGQLVGTMVFVAHHA 119 DF YGF A + Q F+P +SS V LI +F + AF RP GG+FFG LGD +K L++++SLMA+ TT G LP Y +I I +PILL + +L+QGFS GG+ VG M +V+ HA Sbjct: 18 DFGIYGFLATTLAQVFYPGDSSSAVGLIATFGTLAAAFAVRPFGGIFFGALGDRIGRKKVLIMTVSLMAIGTTITGLLPSYEAIGIWAPILLIITKLMQGFSTGGEYVGAMTYVSEHA 135 The following BLAST results are available for this feature:
BLAST of EWM20847.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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