EWM20854.1, cds9819 (CDS) Nannochloropsis gaditana

Overview
NameEWM20854.1
Unique Namecds9819
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:260171..260189 +
Alignment locationKK037256.1:260626..260898 +
Alignment locationKK037256.1:261030..261116 +
Alignment locationKK037256.1:261286..261300 +
Alignment locationKK037256.1:261513..261639 +
Alignment locationKK037256.1:261841..261912 +
Alignment locationKK037256.1:262131..262188 +
Alignment locationKK037256.1:262436..262525 +
Alignment locationKK037256.1:262691..262765 +
Alignment locationKK037256.1:262868..262907 +
Alignment locationKK037256.1:263183..263409 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20854.1
Productperoxiredoxin 1
Orig transcript idgnl|cribi|Naga_100164g14.9734.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:260171..260189 +
KK037256.1supercontigKK037256.1:260626..260898 +
KK037256.1supercontigKK037256.1:261030..261116 +
KK037256.1supercontigKK037256.1:261286..261300 +
KK037256.1supercontigKK037256.1:261513..261639 +
KK037256.1supercontigKK037256.1:261841..261912 +
KK037256.1supercontigKK037256.1:262131..262188 +
KK037256.1supercontigKK037256.1:262436..262525 +
KK037256.1supercontigKK037256.1:262691..262765 +
KK037256.1supercontigKK037256.1:262868..262907 +
KK037256.1supercontigKK037256.1:263183..263409 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0051920peroxiredoxin activity
GO:0016491oxidoreductase activity
GO:0016209antioxidant activity
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR019479Peroxiredoxin_C
IPR000866AhpC/TSA
Homology
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|585100794|gb|EWM20854.1| (peroxiredoxin 1 [Nannochloropsis gaditana])

HSP 1 Score: 736.487 bits (1900), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MRWRRDATRPGVQGSEGLQLHFRQIISPACETSTRVRKWQIRSKFMIKDIFFPFFCTLALSFLSYPSIPVTLAQSVSGTMATNKPVPMIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYFQAVAAELEGGAVKKSSPGVSVRMRGREIKRKRQSKGGSEETPRGEEESVQYRGRVRYEERERRRRRRLRVKKAGAREEGEGTKDRLQRT 360
            MRWRRDATRPGVQGSEGLQLHFRQIISPACETSTRVRKWQIRSKFMIKDIFFPFFCTLALSFLSYPSIPVTLAQSVSGTMATNKPVPMIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYFQAVAAELEGGAVKKSSPGVSVRMRGREIKRKRQSKGGSEETPRGEEESVQYRGRVRYEERERRRRRRLRVKKAGAREEGEGTKDRLQRT
Sbjct:    1 MRWRRDATRPGVQGSEGLQLHFRQIISPACETSTRVRKWQIRSKFMIKDIFFPFFCTLALSFLSYPSIPVTLAQSVSGTMATNKPVPMIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYFQAVAAELEGGAVKKSSPGVSVRMRGREIKRKRQSKGGSEETPRGEEESVQYRGRVRYEERERRRRRRLRVKKAGAREEGEGTKDRLQRT 360          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|553176825|ref|XP_005852406.1| (peroxiredoxin 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296127|gb|EKU23426.1| peroxiredoxin 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.939 bits (829), Expect = 1.298e-108
Identity = 159/168 (94.64%), Postives = 160/168 (95.24%), Query Frame = 0
Query:    7 ATRPGVQGSEGLQLHFRQIISPACETSTRVRKWQIRSKFMIKDIFFPFFCTLALSFLSYPSIPVTLAQSVSGTMATNKPVPMIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRK 174
            ATRPGVQGSEGLQLHFRQIISPACETS RVRKWQIRSKFMIKDIFFPFFCTLALSFLS PSIPVTLAQSVSGTMATNKPVPMIGKPAPDI AEAVMPDGSFKELSLKQYRGRYVILVMYPL     CPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWS+SPRK
Sbjct:    2 ATRPGVQGSEGLQLHFRQIISPACETSRRVRKWQIRSKFMIKDIFFPFFCTLALSFLSCPSIPVTLAQSVSGTMATNKPVPMIGKPAPDIKAEAVMPDGSFKELSLKQYRGRYVILVMYPL-----CPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSRSPRK 164          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|1025062838|ref|XP_016333542.1| (PREDICTED: peroxiredoxin-1 [Sinocyclocheilus anshuiensis] >gi|1025062842|ref|XP_016333543.1| PREDICTED: peroxiredoxin-1 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 251.521 bits (641), Expect = 9.588e-80
Identity = 119/188 (63.30%), Postives = 141/188 (75.00%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFP-----PHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL  Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG  + P      H  S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    8 IGKPAPDFTAKAVMPDGQFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMKVPLVADSLHSISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKEYF 195          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|966709476|gb|KTG41714.1| (hypothetical protein cypCar_00024396 [Cyprinus carpio])

HSP 1 Score: 248.825 bits (634), Expect = 1.601e-78
Identity = 118/188 (62.77%), Postives = 140/188 (74.47%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-----SDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL +Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG    P         S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:   22 IGKPAPDFTAKAVMPDGQFKDLSLSEYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMNVPLVADSLRSISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYF 209          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|3399699|dbj|BAA32086.1| (natural killer cell enhancing factor [Cyprinus carpio] >gi|13365747|dbj|BAB39202.1| natural killer enhancing factor [Cyprinus carpio])

HSP 1 Score: 248.44 bits (633), Expect = 1.905e-78
Identity = 118/188 (62.77%), Postives = 140/188 (74.47%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-----SDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL +Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG    P         S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    8 IGKPAPDFTAKAVMPDGQFKDLSLSEYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMNVPLVADSLRSISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYF 195          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|927030818|gb|ALD62537.1| (peroxiredoxin 1 [Mylopharyngodon piceus])

HSP 1 Score: 247.669 bits (631), Expect = 3.618e-78
Identity = 118/188 (62.77%), Postives = 140/188 (74.47%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-----SDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL  Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG  + P         S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    8 IGKPAPDFTAKAVMPDGQFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMKVPLVADSLRSISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYF 195          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|1020607218|ref|XP_016118947.1| (PREDICTED: peroxiredoxin-1 [Sinocyclocheilus grahami] >gi|1020607223|ref|XP_016118948.1| PREDICTED: peroxiredoxin-1 [Sinocyclocheilus grahami])

HSP 1 Score: 247.669 bits (631), Expect = 3.698e-78
Identity = 118/188 (62.77%), Postives = 140/188 (74.47%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-----SDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL  Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG  + P         S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    8 IGKPAPDFTAKAVMPDGQFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMKVPLVADSLRSISQDYGVLKEDEGIAYRGLFIIDGKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYF 195          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|1020522162|ref|XP_016100540.1| (PREDICTED: peroxiredoxin-1-like [Sinocyclocheilus grahami] >gi|1020522164|ref|XP_016100541.1| PREDICTED: peroxiredoxin-1-like [Sinocyclocheilus grahami] >gi|1025002438|ref|XP_016320200.1| PREDICTED: peroxiredoxin-1-like [Sinocyclocheilus anshuiensis] >gi|1025002440|ref|XP_016320201.1| PREDICTED: peroxiredoxin-1-like [Sinocyclocheilus anshuiensis] >gi|1025354688|ref|XP_016385789.1| PREDICTED: peroxiredoxin-1 [Sinocyclocheilus rhinocerous] >gi|1025354692|ref|XP_016385793.1| PREDICTED: peroxiredoxin-1 [Sinocyclocheilus rhinocerous] >gi|1025354696|ref|XP_016385797.1| PREDICTED: peroxiredoxin-1 [Sinocyclocheilus rhinocerous])

HSP 1 Score: 247.284 bits (630), Expect = 4.448e-78
Identity = 118/188 (62.77%), Postives = 139/188 (73.94%), Query Frame = 0
Query:   89 IGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-----SDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
            IGKPAPD TA+AVMPDG FK+LSL  Y+G+YV+L  YPLDFTFVCP+E+IAFSD ++EF  +N +V+G SVDS + HLAW  +PRK GGLG    P         S +   L+  EG+A RGLFIID  GILRQITINDLP+GR +DETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    8 IGKPAPDFTAKAVMPDGQFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMNVPLVADSLRSISQDYGVLKEDEGIAYRGLFIIDVKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYF 195          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|676769410|gb|KFO98552.1| (Peroxiredoxin-1, partial [Calypte anna])

HSP 1 Score: 246.514 bits (628), Expect = 9.029e-78
Identity = 116/189 (61.38%), Postives = 137/189 (72.49%), Query Frame = 0
Query:   88 MIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFP-----PHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
             IGKPAPD TA AVMPDG FK++ L  Y+G+YV+   YPLDFTFVCP+E+IA+SDR  EF  +N +V+G SVDS + HLAW  +P+K GGLG  + P      H  + E   L+  EG+A RGLFIID  GILRQITINDLP+GR VDETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    9 FIGKPAPDFTATAVMPDGQFKDIKLSDYKGKYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEVIGASVDSHFCHLAWVNTPKKQGGLGTMKIPLISDTKHAIAREYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYF 197          
BLAST of EWM20854.1 vs. NCBI_GenBank
Match: gi|663251634|ref|XP_008488995.1| (PREDICTED: peroxiredoxin-1 isoform X2 [Calypte anna])

HSP 1 Score: 246.514 bits (628), Expect = 9.941e-78
Identity = 116/189 (61.38%), Postives = 137/189 (72.49%), Query Frame = 0
Query:   88 MIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFP-----PHFGSDERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYF 271
             IGKPAPD TA AVMPDG FK++ L  Y+G+YV+   YPLDFTFVCP+E+IA+SDR  EF  +N +V+G SVDS + HLAW  +P+K GGLG  + P      H  + E   L+  EG+A RGLFIID  GILRQITINDLP+GR VDETLRLVQA  F DKHGEVCPAGWKPG  T+K D  +S  YF
Sbjct:    7 FIGKPAPDFTATAVMPDGQFKDIKLSDYKGKYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEVIGASVDSHFCHLAWVNTPKKQGGLGTMKIPLISDTKHAIAREYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYF 195          
The following BLAST results are available for this feature:
BLAST of EWM20854.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100794|gb|EWM20854.1|0.000e+0100.00peroxiredoxin 1 [Nannochloropsis gaditana][more]
gi|553176825|ref|XP_005852406.1|1.298e-10894.64peroxiredoxin 1, partial [Nannochloropsis gaditana... [more]
gi|1025062838|ref|XP_016333542.1|9.588e-8063.30PREDICTED: peroxiredoxin-1 [Sinocyclocheilus anshu... [more]
gi|966709476|gb|KTG41714.1|1.601e-7862.77hypothetical protein cypCar_00024396 [Cyprinus car... [more]
gi|3399699|dbj|BAA32086.1|1.905e-7862.77natural killer cell enhancing factor [Cyprinus car... [more]
gi|927030818|gb|ALD62537.1|3.618e-7862.77peroxiredoxin 1 [Mylopharyngodon piceus][more]
gi|1020607218|ref|XP_016118947.1|3.698e-7862.77PREDICTED: peroxiredoxin-1 [Sinocyclocheilus graha... [more]
gi|1020522162|ref|XP_016100540.1|4.448e-7862.77PREDICTED: peroxiredoxin-1-like [Sinocyclocheilus ... [more]
gi|676769410|gb|KFO98552.1|9.029e-7861.38Peroxiredoxin-1, partial [Calypte anna][more]
gi|663251634|ref|XP_008488995.1|9.941e-7861.38PREDICTED: peroxiredoxin-1 isoform X2 [Calypte ann... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9850rna9850Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications