EWM20861.1, cds9817 (CDS) Nannochloropsis gaditana

Overview
NameEWM20861.1
Unique Namecds9817
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:256072..256353 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20861.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100164g12.9741.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:256072..256353 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585100801|gb|EWM20861.1| (hypothetical protein Naga_100164g12 [Nannochloropsis gaditana])

HSP 1 Score: 189.504 bits (480), Expect = 5.256e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSISLLTQQHQHFMQASPL 93
            MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSISLLTQQHQHFMQASPL
Sbjct:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSISLLTQQHQHFMQASPL 93          
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585100798|gb|EWM20858.1| (protein of unknown function DUF23 [Nannochloropsis gaditana])

HSP 1 Score: 154.066 bits (388), Expect = 4.816e-42
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSIS 78
            MAK  LPF+RSTCC PYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNA+NLVTITTITNSSSIS
Sbjct:    1 MAKTCLPFRRSTCCKPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNASNLVTITTITNSSSIS 78          
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585100803|gb|EWM20863.1| (protein of unknown function DUF23 [Nannochloropsis gaditana])

HSP 1 Score: 127.872 bits (320), Expect = 1.519e-32
Identity = 65/78 (83.33%), Postives = 67/78 (85.90%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSIS 78
            MAK SLPFQ+ TCCN YRRIA LSFA LGLTLVSL    RFDVTSFELIA NLTEEA SSNA+NLVTITTITNSSSIS
Sbjct:    1 MAKTSLPFQQPTCCNFYRRIAALSFASLGLTLVSLCLSPRFDVTSFELIALNLTEEAPSSNASNLVTITTITNSSSIS 78          
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585100804|gb|EWM20864.1| (protein of unknown function DUF23 [Nannochloropsis gaditana])

HSP 1 Score: 122.865 bits (307), Expect = 1.110e-30
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLVTITTITNSSSI 77
            MA  +  FQRSTCCNPYRRIA LSFAILGLTLVSL    RFDVTSF+L+AFNL +E  SSNA+NLVTITTITNSSSI
Sbjct:    1 MATKTFHFQRSTCCNPYRRIAALSFAILGLTLVSLCLSPRFDVTSFKLLAFNLIDETPSSNASNLVTITTITNSSSI 77          
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585100800|gb|EWM20860.1| (protein of unknown function DUF23 [Nannochloropsis gaditana])

HSP 1 Score: 114.005 bits (284), Expect = 1.616e-27
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNLV 66
            MA  +  FQRSTCCNPYRRIAVLS AILGLTLVS YFH+RFDVTSF+L+AFNL +E  SSNANNLV
Sbjct:    1 MATKTFHFQRSTCCNPYRRIAVLSLAILGLTLVSFYFHIRFDVTSFKLLAFNLIDETPSSNANNLV 66          
BLAST of EWM20861.1 vs. NCBI_GenBank
Match: gi|585104190|gb|EWM23238.1| (protein of unknown function DUF23 [Nannochloropsis gaditana])

HSP 1 Score: 87.8113 bits (216), Expect = 3.045e-18
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    1 MAKASLPFQRSTCCNPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIAFNLTEEAHSSNANNL 65
            MA  SL FQRSTCC+ YRRIAVLSFA LGLTL+ L+   R DV S++L+AFNL EEA  SNA+++
Sbjct:   53 MANTSLRFQRSTCCSFYRRIAVLSFATLGLTLIPLFISTRSDVISYKLLAFNLIEEAPLSNASDV 117          
The following BLAST results are available for this feature:
BLAST of EWM20861.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585100801|gb|EWM20861.1|5.256e-61100.00hypothetical protein Naga_100164g12 [Nannochlorops... [more]
gi|585100798|gb|EWM20858.1|4.816e-4293.59protein of unknown function DUF23 [Nannochloropsis... [more]
gi|585100803|gb|EWM20863.1|1.519e-3283.33protein of unknown function DUF23 [Nannochloropsis... [more]
gi|585100804|gb|EWM20864.1|1.110e-3077.92protein of unknown function DUF23 [Nannochloropsis... [more]
gi|585100800|gb|EWM20860.1|1.616e-2778.79protein of unknown function DUF23 [Nannochloropsis... [more]
gi|585104190|gb|EWM23238.1|3.045e-1864.62protein of unknown function DUF23 [Nannochloropsis... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9848rna9848Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications