EWM20866.1, cds9807 (CDS) Nannochloropsis gaditana

Overview
NameEWM20866.1
Unique Namecds9807
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:228351..228431 +
Alignment locationKK037256.1:228625..229416 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20866.1
Productcrooked neck protein
Orig transcript idgnl|cribi|Naga_101248g1.3073.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:228351..228431 +
KK037256.1supercontigKK037256.1:228625..229416 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR003107HAT
Homology
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|585100807|gb|EWM20866.1| (crooked neck protein [Nannochloropsis gaditana])

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALAKAKAGGSQQEGDAGTKGGAGKRKREGEEGEEGEEEGEDRGS 290
            MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALAKAKAGGSQQEGDAGTKGGAGKRKREGEEGEEGEEEGEDRGS
Sbjct:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALAKAKAGGSQQEGDAGTKGGAGKRKREGEEGEEGEEEGEDRGS 290          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|219118326|ref|XP_002179940.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408993|gb|EEC48926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 266.544 bits (680), Expect = 1.001e-80
Identity = 146/253 (57.71%), Postives = 174/253 (68.77%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREG-GMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPS-GLAILQKAQAWKDALAKA 251
            +G+AIG+C  KE +F  Y+ LEL LGEV+RCR LY+ YL+A P +C+AW   A LE  VGE ER RA+ ELAI QPALDMPE LWK YIDFEIE     E+ GE  R           LYERLLERT HVKVWISYA +EG   G G+EGARAVFE+ Y HLKAQ L EER+LLL+AWR  EK  G +  +A VEAK+P+R+K+KRM   E G++ GWEEY+DY FPDDE   S    IL+ A  WK   A+A
Sbjct:  443 LGRAIGQCG-KERIFIEYVALELALGEVDRCRNLYSNYLKAMPHNCKAWFKYADLEKSVGETERCRAIFELAIAQPALDMPEMLWKGYIDFEIE-----ENEGENARK----------LYERLLERTSHVKVWISYAQFEGTDIGKGLEGARAVFEQAYDHLKAQGLSEERVLLLDAWRVFEKSNGSQKDVADVEAKMPRRIKRKRMREDESGKDLGWEEYFDYQFPDDEGGASNNFKILEMAAKWKQQRAEA 679          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|299472137|emb|CBN77122.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 267.7 bits (683), Expect = 1.407e-80
Identity = 143/247 (57.89%), Postives = 169/247 (68.42%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRAS--LAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWK 245
            +GQAIG CP KE LFK Y+QLE  LGE++RCR +Y+K LEA+PS C  W   A LE  VGE ER RAV ELAI QP LDMPE LWK YIDF  E E+G             E  R R L+ERLLERT+HVKVWISYA YE   E  ++ AR VF RGY HL+ Q LKEER+ LLEAWRA EK +G   +  L  VE+K+P++ KK+RM+ G +G   GWEEYYDY FPDDE +P+ L IL+ AQ WK
Sbjct:  425 LGQAIGMCP-KEKLFKGYVQLERDLGEIDRCRKVYSKCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDF--EAENG-------------ETERARQLFERLLERTQHVKVWISYAQYEAKAE--LDTARVVFRRGYDHLRRQGLKEERVKLLEAWRAAEKAEGKGKTRGLKEVESKMPRKFKKRRMMTGTNGEGMGWEEYYDYQFPDDETKPANLKILEMAQKWK 653          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|390369349|ref|XP_787751.3| (PREDICTED: crooked neck-like protein 1 [Strongylocentrotus purpuratus])

HSP 1 Score: 243.817 bits (621), Expect = 1.957e-76
Identity = 127/251 (50.60%), Postives = 165/251 (65.74%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYE--GGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALA 249
            MG AIG+CP K+ LFK+YI++ELQL E +RCR LY K+LE  P++C  WM  A LE  +G+ +R RAV ELAI+QP LDMPE LWK +IDFE+E E+ W++               RALY RLLERT+HVKVWIS+A  E   G E  +  +R V++     LK  E KEERL+LLEAW+  E E GD  S+  V+ ++P ++KK+R +  EDG + GWEEYYDY FP DE   S L +L  A+ WK  +A
Sbjct:   46 MGTAIGKCP-KDKLFKSYIEMELQLREFDRCRVLYEKFLEFNPANCTTWMKYAELETILGDIDRSRAVYELAISQPRLDMPEVLWKSFIDFEVEQEE-WDNS--------------RALYRRLLERTQHVKVWISFAKCELSVGSEDCVLRSRQVYDEANKALKHVEEKEERLMLLEAWQEFENEFGDDESVEQVQEQMPNKVKKRRKIQTEDGSDAGWEEYYDYIFPSDETNQSNLKLLAMAKMWKQKMA 280          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|224003701|ref|XP_002291522.1| (cell cycle control protein cwf4 [Thalassiosira pseudonana CCMP1335] >gi|220973298|gb|EED91629.1| cell cycle control protein cwf4 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 255.758 bits (652), Expect = 2.036e-76
Identity = 137/249 (55.02%), Postives = 171/249 (68.67%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREG-GMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSG-LAILQKAQAWKDA 247
            +G+AIG C  KE +F+ YI LEL LGEV+RCR+LY  YL+A P +C+AW   A LE  VGE ER RA+ ELA+ QPALDMPE LWK YIDFEIE  +G                + RALYERLLE+T HVKVWIS+A +EG   G G++ AR+ F+R +  LK   LKEER+LLL+AWR  EK +GD  SLA V++ +P+R+K+KRM   EDG E GWEEY+DY FP+DE   +G L IL+ A  WK A
Sbjct:  459 LGKAIGLCG-KERIFEEYIALELALGEVDRCRSLYTNYLKAMPHNCRAWSKYAELEKSVGESERCRAIYELAVAQPALDMPEMLWKNYIDFEIEESEG---------------DKARALYERLLEKTGHVKVWISFAQFEGTEVGKGVDAARSTFDRAHERLKEAGLKEERVLLLDAWRVFEKTKGDAQSLAKVDSMLPRRVKRKRMRTDEDGAELGWEEYFDYHFPNDEDANAGNLKILEMAAKWKQA 691          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|857974922|emb|CEO99084.1| (hypothetical protein PBRA_007198 [Plasmodiophora brassicae])

HSP 1 Score: 249.595 bits (636), Expect = 1.826e-74
Identity = 126/245 (51.43%), Postives = 164/245 (66.94%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWK 245
            +G+AIG  P KE LFK+YIQLELQLG+ +RCRTLY KYL   P +C AW   A LE  + E ER RA+ ELAI+QP LDMPE LWK YIDFE + +               +  R R+LY+RLLE+TKHVKVWIS A +E   +  ++ AR VFER   +LKA+  + ER  LLEAWR  E++ G+ A+   V  ++P+RLKK+R++  EDG + GWEEYYDY FPDD    + +A+L+KA+ WK
Sbjct:  432 LGRAIGMAP-KEKLFKSYIQLELQLGDADRCRTLYEKYLIYSPENCHAWSKFANLEKSLAENERARAIFELAISQPVLDMPEVLWKAYIDFETQQD---------------QFDRARSLYDRLLEKTKHVKVWISLAQFETS-QNQLDKARHVFERADKYLKAESRRSERAQLLEAWRDFERKYGNEATQTVVSDRMPRRLKKRRLLTNEDGTDAGWEEYYDYEFPDDAKGAANIALLEKARLWK 659          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|260822509|ref|XP_002606644.1| (hypothetical protein BRAFLDRAFT_57911 [Branchiostoma floridae] >gi|229291988|gb|EEN62654.1| hypothetical protein BRAFLDRAFT_57911 [Branchiostoma floridae])

HSP 1 Score: 248.44 bits (633), Expect = 2.689e-74
Identity = 138/268 (51.49%), Postives = 173/268 (64.55%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREGGMEGARA--VFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALAKAKAGGSQQEGDAGTKG 266
            +G AIGRCP K+ LFK YI+LELQL E +RCR LY K+LE  P +C +W+  A LE  +G+ ER RA+ ELAI+QP LDMPE LWK YIDFEIE E               E  RVR LY RLLERT+HVKVWISYA +E    G    ARA  +FE+G   L++ E KEERL+LLEAWR +E+E G   SL  V   +P+R+KK+R V  EDG + GWEEYYDY FP+DE     L +L  A+ WK+   K +   ++ E ++ T G
Sbjct:  383 LGNAIGRCP-KDKLFKGYIELELQLREFDRCRILYEKFLEFGPENCTSWIKFAELETILGDVERARAIYELAISQPKLDMPEMLWKSYIDFEIEQE---------------EPQRVRELYGRLLERTQHVKVWISYAKFELSVAGDDMAARARKIFEQGNRSLRSCEEKEERLMLLEAWRDVEEEAGTAESLEKVNKLMPKRVKKRRKVQTEDGMDAGWEEYYDYIFPEDEANQPNLKLLAMAKRWKE--QKEREAENEGESESNTIG 632          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|957844216|ref|XP_014672501.1| (PREDICTED: crooked neck-like protein 1 [Priapulus caudatus])

HSP 1 Score: 248.44 bits (633), Expect = 3.283e-74
Identity = 138/287 (48.08%), Postives = 175/287 (60.98%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYE-GGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAW-KDALAKAKAGGSQQEGDAGTKGGAGKRKREGEEGEEGEEEG 285
            +G AIGRCP K+ LF+ YI LE+QL E ERCR LY K+LE  P +C  W+  A LE  +G++ER RA+ ELAI+QP LDMPE LWK YIDFEIE +               E  R RALY RLLERT+HVKVWIS+A +E       +   R V+      +K+ + KEERL+LLE+WR  E E GD  + A VE  +P+R+KK+R V  EDG + GWEEY+DY FP DE     L +L  A+AW K    +A      Q  DA  + G G+   EG +GEE  +EG
Sbjct:  310 LGMAIGRCP-KDKLFRGYIDLEIQLREFERCRILYEKFLETGPENCTTWIKFAELETILGDQERARAIYELAISQPRLDMPEVLWKSYIDFEIEAD---------------EYARTRALYRRLLERTQHVKVWISFAQFELSVNPDDVSFCRGVYAEANKAMKSSDEKEERLMLLESWREFEVEHGDEKTKADVENMMPKRVKKRRKVQTEDGSDAGWEEYFDYIFPSDEAAMPNLKLLAMAKAWRKKQEEQASNDIPTQVADADPEEGEGETINEG-DGEETVKEG 579          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|395509848|ref|XP_003759199.1| (PREDICTED: crooked neck-like protein 1, partial [Sarcophilus harrisii])

HSP 1 Score: 235.343 bits (599), Expect = 1.354e-73
Identity = 124/264 (46.97%), Postives = 160/264 (60.61%), Query Frame = 0
Query:    2 GQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYE--GGREGGMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDEVRPSGLAILQKAQAWKDALAKAKAGGSQQEGDAG 263
            G +IG+CP K  LFK YI+LELQL E +RCR LY K+LE  P +C +W+  A LE  +G+ ER RA+ ELAI+QP LDMPE LWK YIDFEIE E               E  + R+LY RLL+RT+HVKVWIS+A +E   G E  +   R ++E     ++  E KEERL+LLE+WR  E E G  +    V+  +P+++KK+R V  EDG + GWEEYYDY FP+D      L +L  A+ WK           QQE DA 
Sbjct:    1 GTSIGKCP-KNKLFKVYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQE---------------ESEKTRSLYRRLLQRTQHVKVWISFAQFELSAGNEESLTKCRQIYEEANKTMRNCEEKEERLMLLESWRNFEDEFGTESHKERVDKLMPEKVKKRRKVQAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWK---------KQQQEKDAA 239          
BLAST of EWM20866.1 vs. NCBI_GenBank
Match: gi|1210525813|dbj|GAX15419.1| (crooked neck [Fistulifera solaris])

HSP 1 Score: 247.284 bits (630), Expect = 2.011e-73
Identity = 128/230 (55.65%), Postives = 163/230 (70.87%), Query Frame = 0
Query:    1 MGQAIGRCPEKESLFKAYIQLELQLGEVERCRTLYAKYLEAWPSSCQAWMDMAGLEIGVGERERGRAVLELAINQPALDMPERLWKYYIDFEIEGEDGWEDRGEEGRGEGREEGRVRALYERLLERTKHVKVWISYATYEGGREG-GMEGARAVFERGYAHLKAQELKEERLLLLEAWRALEKEQGDRASLAAVEAKVPQRLKKKRMVVGEDGREEGWEEYYDYAFPDDE 229
             G+AIG C  KE +F  YI LEL LGE++RCR++Y  YL+A P +C+AW + A LE  VGE ER RA+ ELAI+QPALDMPE LWK YIDFEIE             GEG+   R RALY+RLLE+T HVKVWIS+A +E    G GM+ +R + E+    L+ ++L EER+LLL+AWR LE+E GD  S++ VEAK+P+R+K+KRM  GE G + GWEEY+DY FPDDE
Sbjct:  443 FGKAIGLCG-KEKIFTEYIALELALGEIDRCRSIYNSYLKAMPHNCKAWSNFAELEKSVGETERCRALFELAISQPALDMPEVLWKAYIDFEIE------------EGEGK---RARALYQRLLEKTNHVKVWISWAQFEATPVGLGMDESRTIMEKADDQLRKEQLSEERVLLLDAWRVLEQEHGDVDSVSKVEAKMPRRIKRKRMRQGEQGNDLGWEEYFDYQFPDDE 656          
The following BLAST results are available for this feature:
BLAST of EWM20866.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100807|gb|EWM20866.1|0.000e+0100.00crooked neck protein [Nannochloropsis gaditana][more]
gi|219118326|ref|XP_002179940.1|1.001e-8057.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299472137|emb|CBN77122.1|1.407e-8057.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|390369349|ref|XP_787751.3|1.957e-7650.60PREDICTED: crooked neck-like protein 1 [Strongyloc... [more]
gi|224003701|ref|XP_002291522.1|2.036e-7655.02cell cycle control protein cwf4 [Thalassiosira pse... [more]
gi|857974922|emb|CEO99084.1|1.826e-7451.43hypothetical protein PBRA_007198 [Plasmodiophora b... [more]
gi|260822509|ref|XP_002606644.1|2.689e-7451.49hypothetical protein BRAFLDRAFT_57911 [Branchiosto... [more]
gi|957844216|ref|XP_014672501.1|3.283e-7448.08PREDICTED: crooked neck-like protein 1 [Priapulus ... [more]
gi|395509848|ref|XP_003759199.1|1.354e-7346.97PREDICTED: crooked neck-like protein 1, partial [S... [more]
gi|1210525813|dbj|GAX15419.1|2.011e-7355.65crooked neck [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9838rna9838Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications