EWM20949.1, cds9722 (CDS) Nannochloropsis gaditana

Overview
NameEWM20949.1
Unique Namecds9722
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:31762..32942 -
Alignment locationKK037256.1:30436..31579 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20949.1
Producttranscriptional activator myb
Orig transcript idgnl|cribi|Naga_100455g4.3249.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:31762..32942 -
KK037256.1supercontigKK037256.1:30436..31579 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0030154cell differentiation
GO:0007049cell cycle
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0042221response to chemical
GO:0006464cellular protein modification process
GO:0009790embryo development
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|585100907|gb|EWM20949.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 1570.06 bits (4064), Expect = 0.000e+0
Identity = 774/774 (100.00%), Postives = 774/774 (100.00%), Query Frame = 0
Query:    1 MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL 774
            MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL
Sbjct:    1 MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL 774          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|553189017|ref|XP_005854914.1| (myb proto-oncogene protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294143|gb|EKU21443.1| myb proto-oncogene protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 353.214 bits (905), Expect = 9.029e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:  231 KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR 394
            KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR
Sbjct:    1 KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR 164          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens])

HSP 1 Score: 224.172 bits (570), Expect = 1.561e-65
Identity = 99/154 (64.29%), Postives = 120/154 (77.92%), Query Frame = 0
Query:  248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFK 401
            KWT EED RLRE+V   GAKNW+R+A +L    R+DV C HRWNKVLRPGL +G WT +ED +VK MV+  G   I+WSV+A   PGR+GKQCRERWFNHLDP+I + +W+PEED IL+ET  V GNRW+EIAK +PGRTENAVKNR+NS+  K
Sbjct:    1 KWTEEEDNRLREIVETFGAKNWKRLAMLLGNV-RSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARK 153          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 238.81 bits (608), Expect = 1.280e-63
Identity = 101/157 (64.33%), Postives = 121/157 (77.07%), Query Frame = 0
Query:  248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWV 404
            KWT EED RLRE+V   GA+NWR VAE L    R+DV C HRWNKVLRPGL +G WTEEED++V++ V  +G ++++WSVVA   PGR+GKQCRERWFNHLDP I + EWSPEEDRI++      GNRW EIAK +PGRTENAVKNRFNS+  K W+
Sbjct:   96 KWTKEEDTRLREIVEHHGARNWRMVAEQLGTL-RSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKKWL 251          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|675179577|ref|XP_008898673.1| (hypothetical protein PPTG_06498 [Phytophthora parasitica INRA-310] >gi|566008297|gb|ETI31208.1| hypothetical protein F443_21792 [Phytophthora parasitica P1569] >gi|567945797|gb|ETK71608.1| hypothetical protein L915_21185 [Phytophthora parasitica] >gi|567974455|gb|ETL25049.1| hypothetical protein L916_21057 [Phytophthora parasitica] >gi|568003923|gb|ETL78262.1| hypothetical protein L917_20913 [Phytophthora parasitica] >gi|568033834|gb|ETM31526.1| hypothetical protein L914_20927 [Phytophthora parasitica] >gi|568101648|gb|ETN16334.1| hypothetical protein PPTG_06498 [Phytophthora parasitica INRA-310] >gi|570311982|gb|ETO59930.1| hypothetical protein F444_21814 [Phytophthora parasitica P1976] >gi|570935770|gb|ETP01027.1| hypothetical protein F441_21673 [Phytophthora parasitica CJ01A1] >gi|570966046|gb|ETP29165.1| hypothetical protein F442_21650 [Phytophthora parasitica P10297])

HSP 1 Score: 208.764 bits (530), Expect = 2.240e-53
Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 0
Query:  247 VKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWV 404
             KW  +EDERLR  VA  G KNW+ +AE L   GRTDV C HRWNKVL+PGL +G WT EED ++  ++   G+ +IRW  +A   PGR+GKQCRERW NHLD  I + +W+PEED +++      GN+W+EIAK +PGRTENAVKNRFNSA  + W+
Sbjct:  387 TKWLRDEDERLRVAVARFGGKNWKMIAETLGN-GRTDVQCLHRWNKVLKPGLIKGPWTPEEDRILTSLITRYGVGKIRWCDLALHLPGRIGKQCRERWCNHLDSRIRKGQWTPEEDDMVFRWQQKLGNKWSEIAKLLPGRTENAVKNRFNSAARRKWL 543          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|676384579|ref|XP_009035568.1| (hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens] >gi|323453633|gb|EGB09504.1| hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens])

HSP 1 Score: 192.2 bits (487), Expect = 2.700e-53
Identity = 89/168 (52.98%), Postives = 116/168 (69.05%), Query Frame = 0
Query:  238 KPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEE----IRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFK 401
            +PRK P    KW+ EED+RL ++V   GAK W+RVAE+L    RTD+ C HRW KV++PGL +G W+ EED VVK  VM    E     ++W+ +A    GR+GKQCRERWFNHLDP I + EW P E+R L++    +GNRW EIAK +PGR+ENA+KNR+NS+  K
Sbjct:   13 RPRK-PSIGGKWSDEEDKRLLQIVEENGAKKWKRVAELLGSV-RTDIQCLHRWTKVIKPGLNKGPWSAEEDEVVKSNVMKMQSESNEGVVKWAEIAKILKGRLGKQCRERWFNHLDPTIKKGEWEPHENRTLFDLQQQYGNRWCEIAKALPGRSENAIKNRWNSSAMK 178          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|813174420|ref|XP_012204936.1| (hypothetical protein SPRG_10418 [Saprolegnia parasitica CBS 223.65] >gi|641530204|gb|KDO24341.1| hypothetical protein SPRG_10418 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 202.986 bits (515), Expect = 2.979e-53
Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 0
Query:  249 WTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQ 407
            W   ED++LR+ +   G KNW++VA +L+  G+TDV C HRWNKVL+PGL +GAW+ EED V++ +++  G+  IRW+ VA+   GR GKQCRERW N L PDIN+ EWS  ED +++      GNRW+EIAK +PGRTENA+KNR+NS+  KNW   Q
Sbjct:  226 WCEREDKQLRKAIKNLGTKNWKQVAMMLNT-GKTDVQCLHRWNKVLKPGLLKGAWSAEEDDVLRSLMLKYGVGNIRWADVANHIQGRTGKQCRERWRNCLSPDINKGEWSAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSARKNWFSKQ 383          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|669142078|ref|XP_008606601.1| (hypothetical protein SDRG_02778 [Saprolegnia diclina VS20] >gi|530741885|gb|EQC40127.1| hypothetical protein SDRG_02778 [Saprolegnia diclina VS20])

HSP 1 Score: 201.83 bits (512), Expect = 5.839e-53
Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 0
Query:  249 WTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQ 407
            W   ED++LR+ +   G KNW++VA +L+  G+TDV C HRWNKVL+PGL +GAW+ EED V++ +++  G+  IRW+ VA+   GR GKQCRERW N L PDIN+ EWS  ED +++      GNRW+EIAK +PGRTENA+KNR+NS+  KNW   Q
Sbjct:  226 WCEREDKQLRKAIKNLGTKNWKQVAMMLNT-GKTDVQCLHRWNKVLKPGLLKGAWSAEEDDVLRSLMLKFGVGNIRWADVANHIQGRTGKQCRERWRNCLSPDINKGEWSAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSARKNWFSKQ 383          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|18655633|pdb|1H88|C (Chain C, Crystal Structure Of Ternary Protein-dna Complex1 >gi|18655638|pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2)

HSP 1 Score: 189.889 bits (481), Expect = 7.835e-53
Identity = 82/154 (53.25%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  244 VASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNS 397
            +   +WT EEDE+L+++V   G  +W+ +A  L  P RTDV CQHRW KVL P L +G WT+EED  V K+V   G +  RWSV+A    GR+GKQCRERW NHL+P++ +  W+ EEDRI+Y+ H   GNRW EIAK +PGRT+NA+KN +NS
Sbjct:    4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL--PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153          
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|1210520839|dbj|GAX20402.1| (myb proto-oncogene protein [Fistulifera solaris])

HSP 1 Score: 197.208 bits (500), Expect = 1.897e-52
Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 0
Query:  248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNS 397
            KWT EED+ LR  V   G KNW+++A  L  PGR+DV C HRW KVLRPGL +G WT EED  V +MV   G +  +WS +A    GR+GKQCRERW+NHLDP+IN++EW+  ED+IL   H   GNRW EIAK +PGRT+NA+KNR+NS
Sbjct:  194 KWTEEEDDLLRRAVREHGGKNWKKIASCL--PGRSDVQCLHRWQKVLRPGLVKGPWTTEEDETVARMVHLHGTK--KWSQIARQLKGRLGKQCRERWYNHLDPNINKSEWTEREDQILIMAHEELGNRWAEIAKRLPGRTDNAIKNRWNS 339          
The following BLAST results are available for this feature:
BLAST of EWM20949.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100907|gb|EWM20949.1|0.000e+0100.00transcriptional activator myb [Nannochloropsis gad... [more]
gi|553189017|ref|XP_005854914.1|9.029e-115100.00myb proto-oncogene protein, partial [Nannochlorops... [more]
gi|676387185|ref|XP_009036871.1|1.561e-6564.29hypothetical protein AURANDRAFT_7821, partial [Aur... [more]
gi|298708729|emb|CBJ30691.1|1.280e-6364.33conserved unknown protein [Ectocarpus siliculosus][more]
gi|675179577|ref|XP_008898673.1|2.240e-5355.70hypothetical protein PPTG_06498 [Phytophthora para... [more]
gi|676384579|ref|XP_009035568.1|2.700e-5352.98hypothetical protein AURANDRAFT_24720, partial [Au... [more]
gi|813174420|ref|XP_012204936.1|2.979e-5353.46hypothetical protein SPRG_10418 [Saprolegnia paras... [more]
gi|669142078|ref|XP_008606601.1|5.839e-5353.46hypothetical protein SDRG_02778 [Saprolegnia dicli... [more]
gi|18655633|pdb|1H88|C7.835e-5353.25Chain C, Crystal Structure Of Ternary Protein-dna ... [more]
gi|1210520839|dbj|GAX20402.1|1.897e-5258.00myb proto-oncogene protein [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9753rna9753Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications