EWM20949.1, cds9722 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|585100907|gb|EWM20949.1| (transcriptional activator myb [Nannochloropsis gaditana]) HSP 1 Score: 1570.06 bits (4064), Expect = 0.000e+0 Identity = 774/774 (100.00%), Postives = 774/774 (100.00%), Query Frame = 0 Query: 1 MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL 774 MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL Sbjct: 1 MISNRSINALSIRFPSYINRSTLNSRWFLSFLVAQRTLLGDFPFFHYTMISSLYLPGGRKDDEVAGAYDVNLGGIPGAGDPLQTHYSTFHHHMPRDAYTQPQYTSHPFEVDGGFCVAMDKDVSGTKEEDTYMYSTTGQRSFQPDFAAAPASSTFPCSLSFSTQTVPQSASHPSPMDLSGEQQQSRRQGGRSDGGRPSPLGLPDTDEDTDTAAGSVEGPILEVLGKSIPIPKNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQGLVLRAPGAPPAPAAALPEIPPPTLKRRKPKRAAATSAAAATKTTSTRDSTADSGGDAEVSPSKGQGVPAPAAGGRLSCKGVREPKKNTSASSSSSSSSSSSSSLPSSSSSSSSSSLPSSSSSSSSSSSTSSSIPASAGQPSCPTASFQGVDAGSTISSLFPSYPSSSSSFSSLPSSTASSSSSSILTHQAEFSPLLSSSPSFSSSATSFTHVHPPKRVFSHSPSSSSSSLHPYAHSLYAQGSHQSDDFLSTASSTLTSAPTALSQHQRISSSDIVRELQTWLSLGDTVPLGPPSIPPSLAASTHMTDQQWPCEQGGRSGNLSMFQAQDLMPRVEKGHEQEGREAPEDASYDFVSGASTSSLFLSDL 774
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|553189017|ref|XP_005854914.1| (myb proto-oncogene protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294143|gb|EKU21443.1| myb proto-oncogene protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 353.214 bits (905), Expect = 9.029e-115 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 Query: 231 KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR 394 KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR Sbjct: 1 KNYTAPKKPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNR 164
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens]) HSP 1 Score: 224.172 bits (570), Expect = 1.561e-65 Identity = 99/154 (64.29%), Postives = 120/154 (77.92%), Query Frame = 0 Query: 248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFK 401 KWT EED RLRE+V GAKNW+R+A +L R+DV C HRWNKVLRPGL +G WT +ED +VK MV+ G I+WSV+A PGR+GKQCRERWFNHLDP+I + +W+PEED IL+ET V GNRW+EIAK +PGRTENAVKNR+NS+ K Sbjct: 1 KWTEEEDNRLREIVETFGAKNWKRLAMLLGNV-RSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARK 153
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 238.81 bits (608), Expect = 1.280e-63 Identity = 101/157 (64.33%), Postives = 121/157 (77.07%), Query Frame = 0 Query: 248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWV 404 KWT EED RLRE+V GA+NWR VAE L R+DV C HRWNKVLRPGL +G WTEEED++V++ V +G ++++WSVVA PGR+GKQCRERWFNHLDP I + EWSPEEDRI++ GNRW EIAK +PGRTENAVKNRFNS+ K W+ Sbjct: 96 KWTKEEDTRLREIVEHHGARNWRMVAEQLGTL-RSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKKWL 251
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|675179577|ref|XP_008898673.1| (hypothetical protein PPTG_06498 [Phytophthora parasitica INRA-310] >gi|566008297|gb|ETI31208.1| hypothetical protein F443_21792 [Phytophthora parasitica P1569] >gi|567945797|gb|ETK71608.1| hypothetical protein L915_21185 [Phytophthora parasitica] >gi|567974455|gb|ETL25049.1| hypothetical protein L916_21057 [Phytophthora parasitica] >gi|568003923|gb|ETL78262.1| hypothetical protein L917_20913 [Phytophthora parasitica] >gi|568033834|gb|ETM31526.1| hypothetical protein L914_20927 [Phytophthora parasitica] >gi|568101648|gb|ETN16334.1| hypothetical protein PPTG_06498 [Phytophthora parasitica INRA-310] >gi|570311982|gb|ETO59930.1| hypothetical protein F444_21814 [Phytophthora parasitica P1976] >gi|570935770|gb|ETP01027.1| hypothetical protein F441_21673 [Phytophthora parasitica CJ01A1] >gi|570966046|gb|ETP29165.1| hypothetical protein F442_21650 [Phytophthora parasitica P10297]) HSP 1 Score: 208.764 bits (530), Expect = 2.240e-53 Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 0 Query: 247 VKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWV 404 KW +EDERLR VA G KNW+ +AE L GRTDV C HRWNKVL+PGL +G WT EED ++ ++ G+ +IRW +A PGR+GKQCRERW NHLD I + +W+PEED +++ GN+W+EIAK +PGRTENAVKNRFNSA + W+ Sbjct: 387 TKWLRDEDERLRVAVARFGGKNWKMIAETLGN-GRTDVQCLHRWNKVLKPGLIKGPWTPEEDRILTSLITRYGVGKIRWCDLALHLPGRIGKQCRERWCNHLDSRIRKGQWTPEEDDMVFRWQQKLGNKWSEIAKLLPGRTENAVKNRFNSAARRKWL 543
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|676384579|ref|XP_009035568.1| (hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens] >gi|323453633|gb|EGB09504.1| hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens]) HSP 1 Score: 192.2 bits (487), Expect = 2.700e-53 Identity = 89/168 (52.98%), Postives = 116/168 (69.05%), Query Frame = 0 Query: 238 KPRKQPVASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEE----IRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFK 401 +PRK P KW+ EED+RL ++V GAK W+RVAE+L RTD+ C HRW KV++PGL +G W+ EED VVK VM E ++W+ +A GR+GKQCRERWFNHLDP I + EW P E+R L++ +GNRW EIAK +PGR+ENA+KNR+NS+ K Sbjct: 13 RPRK-PSIGGKWSDEEDKRLLQIVEENGAKKWKRVAELLGSV-RTDIQCLHRWTKVIKPGLNKGPWSAEEDEVVKSNVMKMQSESNEGVVKWAEIAKILKGRLGKQCRERWFNHLDPTIKKGEWEPHENRTLFDLQQQYGNRWCEIAKALPGRSENAIKNRWNSSAMK 178
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|813174420|ref|XP_012204936.1| (hypothetical protein SPRG_10418 [Saprolegnia parasitica CBS 223.65] >gi|641530204|gb|KDO24341.1| hypothetical protein SPRG_10418 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 202.986 bits (515), Expect = 2.979e-53 Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 0 Query: 249 WTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQ 407 W ED++LR+ + G KNW++VA +L+ G+TDV C HRWNKVL+PGL +GAW+ EED V++ +++ G+ IRW+ VA+ GR GKQCRERW N L PDIN+ EWS ED +++ GNRW+EIAK +PGRTENA+KNR+NS+ KNW Q Sbjct: 226 WCEREDKQLRKAIKNLGTKNWKQVAMMLNT-GKTDVQCLHRWNKVLKPGLLKGAWSAEEDDVLRSLMLKYGVGNIRWADVANHIQGRTGKQCRERWRNCLSPDINKGEWSAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSARKNWFSKQ 383
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|669142078|ref|XP_008606601.1| (hypothetical protein SDRG_02778 [Saprolegnia diclina VS20] >gi|530741885|gb|EQC40127.1| hypothetical protein SDRG_02778 [Saprolegnia diclina VS20]) HSP 1 Score: 201.83 bits (512), Expect = 5.839e-53 Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 0 Query: 249 WTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNSATFKNWVRAQ 407 W ED++LR+ + G KNW++VA +L+ G+TDV C HRWNKVL+PGL +GAW+ EED V++ +++ G+ IRW+ VA+ GR GKQCRERW N L PDIN+ EWS ED +++ GNRW+EIAK +PGRTENA+KNR+NS+ KNW Q Sbjct: 226 WCEREDKQLRKAIKNLGTKNWKQVAMMLNT-GKTDVQCLHRWNKVLKPGLLKGAWSAEEDDVLRSLMLKFGVGNIRWADVANHIQGRTGKQCRERWRNCLSPDINKGEWSAMEDEVMFRAQQRMGNRWSEIAKLLPGRTENAIKNRWNSSARKNWFSKQ 383
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|18655633|pdb|1H88|C (Chain C, Crystal Structure Of Ternary Protein-dna Complex1 >gi|18655638|pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2) HSP 1 Score: 189.889 bits (481), Expect = 7.835e-53 Identity = 82/154 (53.25%), Postives = 108/154 (70.13%), Query Frame = 0 Query: 244 VASVKWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNS 397 + +WT EEDE+L+++V G +W+ +A L P RTDV CQHRW KVL P L +G WT+EED V K+V G + RWSV+A GR+GKQCRERW NHL+P++ + W+ EEDRI+Y+ H GNRW EIAK +PGRT+NA+KN +NS Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL--PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153
BLAST of EWM20949.1 vs. NCBI_GenBank
Match: gi|1210520839|dbj|GAX20402.1| (myb proto-oncogene protein [Fistulifera solaris]) HSP 1 Score: 197.208 bits (500), Expect = 1.897e-52 Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 0 Query: 248 KWTAEEDERLREVVAAQGAKNWRRVAEILDCPGRTDVSCQHRWNKVLRPGLKRGAWTEEEDAVVKKMVMATGLEEIRWSVVADACPGRMGKQCRERWFNHLDPDINRAEWSPEEDRILYETHLVFGNRWTEIAKFVPGRTENAVKNRFNS 397 KWT EED+ LR V G KNW+++A L PGR+DV C HRW KVLRPGL +G WT EED V +MV G + +WS +A GR+GKQCRERW+NHLDP+IN++EW+ ED+IL H GNRW EIAK +PGRT+NA+KNR+NS Sbjct: 194 KWTEEEDDLLRRAVREHGGKNWKKIASCL--PGRSDVQCLHRWQKVLRPGLVKGPWTTEEDETVARMVHLHGTK--KWSQIARQLKGRLGKQCRERWYNHLDPNINKSEWTEREDQILIMAHEELGNRWAEIAKRLPGRTDNAIKNRWNS 339 The following BLAST results are available for this feature:
BLAST of EWM20949.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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