EWM20958.1, cds9714 (CDS) Nannochloropsis gaditana

Overview
NameEWM20958.1
Unique Namecds9714
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:9851..10228 +

Link to JBrowse

Properties
Property NameValue
Start range9851
Start range.
Protein idEWM20958.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101659g2.4452.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:9851..10228 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585100928|gb|EWM20958.1| (hypothetical protein Naga_101659g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 253.062 bits (645), Expect = 3.019e-85
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEIKLAAAEIKRVLQSGQKSGPFDTP 125
            SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEIKLAAAEIKRVLQSGQKSGPFDTP
Sbjct:    1 SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEIKLAAAEIKRVLQSGQKSGPFDTP 125          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099237|gb|EWM20020.1| (hypothetical protein Naga_102283g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 170.629 bits (431), Expect = 1.578e-51
Identity = 107/145 (73.79%), Postives = 108/145 (74.48%), Query Frame = 0
Query:    1 SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQR---------------------------------EIMRVEGERAAEIKLAAAEIKRV 112
            SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGK TAMVISVGLQIVVGVLGVAS TA AVHHLDQR                                 E+ RVEGERAAEIKLAAAEIKRV
Sbjct:    3 SAYLFCTTFLSLLWGQGAAQGVHAHAHPYTPPGKGRGLRGAFLSTHETGTGTGSGKGTAMVISVGLQIVVGVLGVASVTAAAVHHLDQRELAAAIKLAAAEMKRVEGERAAEMKRVEGERAAEMKRVEGERAAEIKLAAAEIKRV 147          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585098970|gb|EWM19937.1| (hypothetical protein Naga_102907g1 [Nannochloropsis gaditana])

HSP 1 Score: 59.3066 bits (142), Expect = 1.869e-8
Identity = 43/89 (48.31%), Postives = 50/89 (56.18%), Query Frame = 0
Query:   29 YT-PPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI----KLAAAEIKRV 112
            YT P GKGR LRG F ST  TG GT +G+      +   Q +  V+GVA  TAV V   DQ EI  +E + AAEI      AAAEI RV
Sbjct:    2 YTHPTGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQTEIKYIESKAAAEIARVEDKAAAEIARV 90          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099151|gb|EWM19988.1| (hypothetical protein Naga_102432g1 [Nannochloropsis gaditana])

HSP 1 Score: 55.8398 bits (133), Expect = 3.142e-7
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0
Query:   29 YT-PPGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI 102
            YT P GKGR LRG F ST  TG GT SG+      +   Q +  V+GVA  TAV V   DQ EI  +E + AAEI
Sbjct:    2 YTHPTGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQTEIKYIESKAAAEI 76          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099341|gb|EWM20054.1| (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 56.9954 bits (136), Expect = 3.331e-7
Identity = 36/71 (50.70%), Postives = 41/71 (57.75%), Query Frame = 0
Query:   32 PGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI 102
            PGKGR LRG F ST  TG GT SG+      +   Q +  VLGVA  TAV V   DQ EI  V+ + AAEI
Sbjct:  101 PGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAAEI 171          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099166|gb|EWM19993.1| (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 55.4546 bits (132), Expect = 6.179e-7
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0
Query:   32 PGKGRGLRGAFLSTHETGTGTGSGKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI 102
            PGKGR LRG F ST  TG GT +G+      +   Q +  VLGVA  TAV V   DQ EI  V+ + AAEI
Sbjct:   40 PGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAAEI 110          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099306|gb|EWM20041.1| (hypothetical protein Naga_102106g1 [Nannochloropsis gaditana])

HSP 1 Score: 55.8398 bits (133), Expect = 6.299e-7
Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 0
Query:   32 PGKGRGLRGAFLSTHETGTGTGSG-----KWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI 102
            PGKGR LRG F ST  TG GT SG     KW  +   +G      V+GVA  TAV V   DQ EI  V+ + AAEI
Sbjct:   40 PGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATIFQGIG-----AVVGVAGATAVVVRTFDQTEIKYVQSKAAAEI 110          
BLAST of EWM20958.1 vs. NCBI_GenBank
Match: gi|585099363|gb|EWM20066.1| (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 56.225 bits (134), Expect = 7.189e-7
Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 0
Query:   32 PGKGRGLRGAFLSTHETGTGTGSG-----KWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEI 102
            PGKGR LRG F ST  TG GT +G     KW  +   +G      VLGVA  TAV V   DQ EI  V+ + AAEI
Sbjct:  121 PGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIG-----AVLGVAGATAVVVRTFDQTEIKYVQSKAAAEI 191          
The following BLAST results are available for this feature:
BLAST of EWM20958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Position :
0
Zoom :
x 1
01SequenceEWM20958.1EWM20020.1EWM19937.1EWM19988.1EWM20054.1EWM19993.1EWM20041.1EWM20066.1
Match NameE-valueIdentityDescription
gi|585100928|gb|EWM20958.1|3.019e-85100.00hypothetical protein Naga_101659g2, partial [Nanno... [more]
gi|585099237|gb|EWM20020.1|1.578e-5173.79hypothetical protein Naga_102283g1, partial [Nanno... [more]
gi|585098970|gb|EWM19937.1|1.869e-848.31hypothetical protein Naga_102907g1 [Nannochloropsi... [more]
gi|585099151|gb|EWM19988.1|3.142e-749.33hypothetical protein Naga_102432g1 [Nannochloropsi... [more]
gi|585099341|gb|EWM20054.1|3.331e-750.70hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
gi|585099166|gb|EWM19993.1|6.179e-749.30hypothetical protein Naga_102410g1 [Nannochloropsi... [more]
gi|585099306|gb|EWM20041.1|6.299e-748.68hypothetical protein Naga_102106g1 [Nannochloropsi... [more]
gi|585099363|gb|EWM20066.1|7.189e-748.68hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9745rna9745Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications