EWM20983.1, cds9687 (CDS) Nannochloropsis gaditana

Overview
NameEWM20983.1
Unique Namecds9687
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:242361..242789 -
Alignment locationKK037255.1:241940..242238 -

Link to JBrowse

Properties
Property NameValue
Start range241940
Start range.
Protein idEWM20983.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100487g1.5514.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:242361..242789 -
KK037255.1supercontigKK037255.1:241940..242238 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|585100978|gb|EWM20983.1| (hypothetical protein Naga_100487g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 489.96 bits (1260), Expect = 5.118e-175
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
Query:    1 MTRGRQALEMMPASAKSRSCCQAAVARPTSSILLAAGLLLTTSAVAASVPLRVSNAFLPAPQHQSLHSVHGHSSPSCCERRHQAGPPSPPSSPSPPSVIRRQAMLPPFDSPLDPATLEGMAAASSAAGSTGGALNEVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243
            MTRGRQALEMMPASAKSRSCCQAAVARPTSSILLAAGLLLTTSAVAASVPLRVSNAFLPAPQHQSLHSVHGHSSPSCCERRHQAGPPSPPSSPSPPSVIRRQAMLPPFDSPLDPATLEGMAAASSAAGSTGGALNEVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG
Sbjct:    1 MTRGRQALEMMPASAKSRSCCQAAVARPTSSILLAAGLLLTTSAVAASVPLRVSNAFLPAPQHQSLHSVHGHSSPSCCERRHQAGPPSPPSSPSPPSVIRRQAMLPPFDSPLDPATLEGMAAASSAAGSTGGALNEVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|298715203|emb|CBJ27875.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.398 bits (298), Expect = 3.120e-30
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0
Query:  158 FEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAG 242
            +EF KRI  Q+ C VC+GSGLV  + SGK L  P+KCYACGGFLPW  W +FW +N+D+GNGGVLQRPA DY+ L+EAA+  + G
Sbjct:   68 YEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAKDG 152          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|1199291524|gb|OUS46616.1| (hypothetical protein BE221DRAFT_191790 [Ostreococcus tauri])

HSP 1 Score: 96.2857 bits (238), Expect = 4.045e-21
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  136 EVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAK 237
            EV   QLW GFIAG+ PF  A +EF KR+ +Q+RC  C G+GLV     G+ +    KC ACGGFLPW  W RF  S  ++GNGGV++ P     A     K
Sbjct:   60 EVEQWQLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDGRKV----KCPACGGFLPWESWERFLTS--EVGNGGVVRAPKGQTSAFYSVEK 155          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|308810122|ref|XP_003082370.1| (unnamed protein product [Ostreococcus tauri] >gi|116060838|emb|CAL57316.1| unnamed product [Ostreococcus tauri])

HSP 1 Score: 93.9745 bits (232), Expect = 1.238e-20
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  136 EVTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAK 237
            EV   QLW GFIAG+ PF  A +EF KR+ +Q+RC  C G+GLV     G+ +    KC ACGGFLPW  W RF  S  ++GNGGV++ P     A     K
Sbjct:   30 EVEQWQLWFGFIAGLSPFAIAAYEFGKRVLIQKRCARCAGAGLVVLGDDGRKV----KCPACGGFLPWESWERFLTS--EVGNGGVVRAPKGQTSAFYSVEK 125          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|145352682|ref|XP_001420667.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144580902|gb|ABO98960.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 95.1301 bits (235), Expect = 1.527e-20
Identity = 51/102 (50.00%), Postives = 61/102 (59.80%), Query Frame = 0
Query:  137 VTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLV-YENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAK 237
            V + QLW GFIAGV PF  A +EF KR+ +Q+RC +C GSGLV  E + G  L    KC ACGGFLPW  W RF  S  + GNGGV++ P     A     K
Sbjct:   60 VEAWQLWFGFIAGVSPFAIAAYEFGKRVLIQRRCALCAGSGLVEVERSRGARLV---KCTACGGFLPWQSWERFLSS--EAGNGGVVRAPKGQTSAFYSVEK 156          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|612393254|ref|XP_007512147.1| (predicted protein [Bathycoccus prasinos] >gi|424513613|emb|CCO66235.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 93.2041 bits (230), Expect = 1.508e-19
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0
Query:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWL--SNLDIGNGGVLQRPAA------DYEALSEAAKRRRA 241
            QL+ GF AG+ PF+ A +EF KRI +Q++C +CQGSGL+      K     RKC ACGGFLPW  W RF    +   IGNGG ++ P        D E    A+++R+A
Sbjct:   89 QLYFGFFAGIAPFIIAAYEFGKRILIQRKCALCQGSGLI------KKGEYARKCTACGGFLPWESWERFLDVGTTAKIGNGGRVRVPEGQTSVFYDVEKTVLASEKRKA 191          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|159475006|ref|XP_001695614.1| (hypothetical protein CHLREDRAFT_205653 [Chlamydomonas reinhardtii] >gi|158275625|gb|EDP01401.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 93.2041 bits (230), Expect = 1.007e-18
Identity = 45/92 (48.91%), Postives = 54/92 (58.70%), Query Frame = 0
Query:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEAL 232
            ++W+GFIAGV PF    +EF KRI +Q RC VC G GLV    +GK   + RKC  CGGF PW  W+ F  S    GNGG LQ+P      L
Sbjct:  170 EIWLGFIAGVVPFAIGSYEFGKRILIQLRCEVCGGRGLVPSGGAGKDKYL-RKCPQCGGFFPWISWQMFLSSTATPGNGGPLQQPRGQTSVL 260          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|1004138858|gb|KXZ46869.1| (hypothetical protein GPECTOR_40g603 [Gonium pectorale])

HSP 1 Score: 90.8929 bits (224), Expect = 1.282e-18
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 0
Query:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEAL 232
            ++W+GF+AGV PF    +EF KRI +Q RC VC G GLV     GK L   RKC  CGGF PW  W+ F  S    GNGG LQ+P      L
Sbjct:   74 EIWIGFVAGVVPFAIGSYEFGKRIIIQLRCEVCGGRGLVPSAGPGKYL---RKCPQCGGFFPWISWKMFLSSTAAPGNGGPLQQPRGQTSVL 162          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|303270961|ref|XP_003054842.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226462816|gb|EEH60094.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 90.5077 bits (223), Expect = 2.242e-17
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0
Query:  126 AAGSTGGALNE--VTSEQLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSE 234
            AA S   AL++  V   Q++ G +AG+ PFV A +EF KRI +Q+RC +CQGSGL+      K     RKC +CGGFLPW  W  F+ S  + GNGG L++P     A  +
Sbjct:   92 AASSMADALSDTGVPEWQIYYGAVAGLSPFVIAAYEFGKRILIQRRCELCQGSGLI------KRGRYSRKCTSCGGFLPWESWELFFTS--EAGNGGALRQPKGQTSAFYD 194          
BLAST of EWM20983.1 vs. NCBI_GenBank
Match: gi|545358422|ref|XP_005644785.1| (hypothetical protein COCSUDRAFT_54440 [Coccomyxa subellipsoidea C-169] >gi|384246752|gb|EIE20241.1| hypothetical protein COCSUDRAFT_54440 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 83.5741 bits (205), Expect = 1.876e-16
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 0
Query:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAG 242
            ++WVG IA   PFV   +EF KRI +Q+RC  CQGSGLV            RKC  CGGF PW GW +F+ S    GNGG L+ P        +   +R  G
Sbjct:   35 EIWVGTIAACVPFVIGSWEFGKRIIIQRRCSRCQGSGLVMRG------QFARKCPDCGGFFPWQGWWKFFTSTAAPGNGGPLRAPKGQSSVFYKVPSKRENG 130          
The following BLAST results are available for this feature:
BLAST of EWM20983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100978|gb|EWM20983.1|5.118e-175100.00hypothetical protein Naga_100487g1, partial [Nanno... [more]
gi|298715203|emb|CBJ27875.1|3.120e-3061.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|1199291524|gb|OUS46616.1|4.045e-2147.06hypothetical protein BE221DRAFT_191790 [Ostreococc... [more]
gi|308810122|ref|XP_003082370.1|1.238e-2047.06unnamed protein product [Ostreococcus tauri] >gi|1... [more]
gi|145352682|ref|XP_001420667.1|1.527e-2050.00predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|612393254|ref|XP_007512147.1|1.508e-1944.04predicted protein [Bathycoccus prasinos] >gi|42451... [more]
gi|159475006|ref|XP_001695614.1|1.007e-1848.91hypothetical protein CHLREDRAFT_205653 [Chlamydomo... [more]
gi|1004138858|gb|KXZ46869.1|1.282e-1848.91hypothetical protein GPECTOR_40g603 [Gonium pector... [more]
gi|303270961|ref|XP_003054842.1|2.242e-1744.14predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|545358422|ref|XP_005644785.1|1.876e-1643.14hypothetical protein COCSUDRAFT_54440 [Coccomyxa s... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9718rna9718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications