EWM20988.1, cds9682 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20988.1
Unique Name	cds9682
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037255.1:221371..223998 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20988.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100211g3.3042.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:221371..223998 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

Homology

[Close]

BLAST of EWM20988.1 vs. NCBI_GenBank
Match: gi|585100984|gb|EWM20988.1| (hypothetical protein Naga_100211g3 [Nannochloropsis gaditana])

HSP 1 Score: 1761.5 bits (4561), Expect = 0.000e+0
Identity = 875/875 (100.00%), Postives = 875/875 (100.00%), Query Frame = 0

Query:    1 MRRDAAQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGPLRAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTTLQHRRSEPREGARSVKSLRGVIQASVKDLLDLIEAGASLDKALPGFASLIAWATRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPCNALWQEVKVALVAQVQERERNPSLLKGQMEALCSLLGEKRRTRSFSVPLAESCAHVSKGDVRVLAQNAAPRDLETSGKLLCCIFRHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNTAKISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLGVLPESSDAPHFGPFRVRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLARPAAQIGPTSSATPCLDPLISYRLSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVTPPHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVGQGPEGQGGGKGGCSSALPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVFGTLFVAALGQLLKTVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM 875
            MRRDAAQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGPLRAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTTLQHRRSEPREGARSVKSLRGVIQASVKDLLDLIEAGASLDKALPGFASLIAWATRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPCNALWQEVKVALVAQVQERERNPSLLKGQMEALCSLLGEKRRTRSFSVPLAESCAHVSKGDVRVLAQNAAPRDLETSGKLLCCIFRHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNTAKISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLGVLPESSDAPHFGPFRVRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLARPAAQIGPTSSATPCLDPLISYRLSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVTPPHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVGQGPEGQGGGKGGCSSALPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVFGTLFVAALGQLLKTVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM
Sbjct:    1 MRRDAAQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGPLRAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTTLQHRRSEPREGARSVKSLRGVIQASVKDLLDLIEAGASLDKALPGFASLIAWATRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPCNALWQEVKVALVAQVQERERNPSLLKGQMEALCSLLGEKRRTRSFSVPLAESCAHVSKGDVRVLAQNAAPRDLETSGKLLCCIFRHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNTAKISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLGVLPESSDAPHFGPFRVRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLARPAAQIGPTSSATPCLDPLISYRLSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVTPPHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVGQGPEGQGGGKGGCSSALPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVFGTLFVAALGQLLKTVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM 875

[Close]

BLAST of EWM20988.1 vs. NCBI_GenBank
Match: gi|553194625|ref|XP_005856000.1| (hypothetical protein NGA_2085200, partial [Nannochloropsis gaditana CCMP526] >gi|422293061|gb|EKU20362.1| hypothetical protein NGA_2085200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1704.88 bits (4414), Expect = 0.000e+0
Identity = 848/875 (96.91%), Postives = 857/875 (97.94%), Query Frame = 0

Query:    1 MRRDAAQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGPLRAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTTLQHRRSEPREGARSVKSLRGVIQASVKDLLDLIEAGASLDKALPGFASLIAWATRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPCNALWQEVKVALVAQVQERERNPSLLKGQMEALCSLLGEKRRTRSFSVPLAESCAHVSKGDVRVLAQNAAPRDLETSGKLLCCIFRHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNTAKISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLGVLPESSDAPHFGPFRVRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLARPAAQIGPTSSATPCLDPLISYRLSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVTPPHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVGQGPEGQGGGKGGCSSALPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVFGTLFVAALGQLLKTVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM 875
            MRRD AQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGP+RAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTT QHRRS PREGARSVKSLRGVIQASVKDLLDLIEAGASLDK LPGFASLIAW TRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPC+ALWQEVKVALVAQVQERERNPSLLKGQMEALCSL GEKRRTRS S+PLAESCAHVS+GDVRVLAQNAA RDLETSG+LLCCI RHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNT KISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLG+LPESSDAPHFGPF VRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLAR AA IGPTSSATPCLDPLI Y+LSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVT PHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVG GPEGQGGGKGGCS++LPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVF TLFVAALGQLL TVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM
Sbjct:  276 MRRDGAQTSPCLFPLILLLSRLRPPSEHVAENETSGALDESLKQCLPSVVRCACLPDGLMRLTAARAFASLVGPVRAAAVVLALLSALPPSCGAAHPALDPAFRGASHEYYNTLHGILLMINSLLRSVPQAVCRLRHDDGGEVLGSLPHFLPLCSDSGLSLVEERRWLTGPGMTCPPVREEALQMFLYINHLLESLEPAQAPIAASERSAAQVFRHTHRHPLHAAGDGVISTTPQHRRSGPREGARSVKSLRGVIQASVKDLLDLIEAGASLDKPLPGFASLIAWTTRWSLPLSLSCESLESRTPCMLEKVLATWLRHRIVEVRREALRVLLFLLNRRADLGDGQTQEDGAADDKFLEQTLRVACREPCDALWQEVKVALVAQVQERERNPSLLKGQMEALCSLFGEKRRTRSSSLPLAESCAHVSEGDVRVLAQNAATRDLETSGELLCCISRHEPQAFSSVCLASGGGGGILARKLELMGHVVGEEVRRAQQYELDRNTVKISYDRGLKNVEEWMCLIESAALPTQTSAMRQAALSSLRASGLGILPESSDAPHFGPFLVRALFAVSVLAQDDEDAIREGARSVLEAAVAGKRLARSAAPIGPTSSATPCLDPLIGYKLSQLARCSQGVAEEWGRAVVRVVILRIRGLEAVLRISVTSPHLGLSQQIFRPEPDNVFEEPALVSYWAVRSLIVSLAEIEEPSSFYEVGVGPEGQGGGKGGCSTSLPTGWFENAELAELDALWEHAGLVTEAFESSAWPGGLTYHPDVFATLFVAALGQLLITVLAPVSGEMEDRRTLWKRLQEVGESHPLMAWALSSLQAVTGKEEPKTVQARAKMVLDAVNWTVVDKYTPFARPGLETDTFLSVQRATWEKAM 1150

The following BLAST results are available for this feature:

BLAST of EWM20988.1 vs. NCBI_GenBank

BLAST of EWM20988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585100984\|gb\|EWM20988.1\|	0.000e+0	100.00	hypothetical protein Naga_100211g3 [Nannochloropsi...	[more]
gi\|553194625\|ref\|XP_005856000.1\|	0.000e+0	96.91	hypothetical protein NGA_2085200, partial [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9713	rna9713	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications