EWM20993.1, cds9680 (CDS) Nannochloropsis gaditana

Overview
NameEWM20993.1
Unique Namecds9680
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:219480..219615 -
Alignment locationKK037255.1:217068..219205 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20993.1
Productmyb-related 3r-1-like protein
Orig transcript idgnl|cribi|Naga_100211g1.3047.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:219480..219615 -
KK037255.1supercontigKK037255.1:217068..219205 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1549.26 bits (4010), Expect = 0.000e+0
Identity = 757/757 (100.00%), Postives = 757/757 (100.00%), Query Frame = 0
Query:    1 MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR 757
            MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR
Sbjct:    1 MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR 757          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 231.876 bits (590), Expect = 1.437e-64
Identity = 123/280 (43.93%), Postives = 161/280 (57.50%), Query Frame = 0
Query:  129 PGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407
            PG  WT ++D +LRK V + G  NW  IS +      +  QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK  W+ EEDK L  G+  +GNAWAKIA LLPGR ENS+KNRW SA  A+ R  V    PP WD   E++ + ++C                            +S RK    + D +  ++  L   +P  Y   L   + + LH RL   L+REA KY P   L R  LRRA+
Sbjct:   61 PGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 308          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 232.261 bits (591), Expect = 9.610e-64
Identity = 123/280 (43.93%), Postives = 161/280 (57.50%), Query Frame = 0
Query:  129 PGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407
            PG  WT ++D +LRK V + G  NW  IS +      +  QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK  W+ EEDK L  G+  +GNAWAKIA LLPGR ENS+KNRW SA  A+ R  V    PP WD   E++ + ++C                            +S RK    + D +  ++  L   +P  Y   L   + + LH RL   L+REA KY P   L R  LRRA+
Sbjct:  161 PGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 408          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 210.305 bits (534), Expect = 6.577e-54
Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 0
Query:   90 HLSTFLPVESNGRK----------RKSARNEVKEGEDPRLVSVDEDEADPGPS--WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
            H+++  P+  +G++           KS +  +   E+ R   + E  + PG    W+ E+DA LR  VAS+GP+ WK+IS E  +G  +D QCL+RW KVL+PGLVKGPW  EED +IL+C++ G  KW+ IA+ IPGRLGKQCRERW N+LDP++ K  W+ EED+ L   QA+ GNAW KIA  LPGRSEN+VKNRWNS+   R
Sbjct:  111 HVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens])

HSP 1 Score: 177.948 bits (450), Expect = 1.681e-48
Identity = 82/154 (53.25%), Postives = 109/154 (70.78%), Query Frame = 0
Query:  133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMR---SGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
            WT+E+D +LR++V + G KNWK+++      + +D QCL+RW KVLRPGL KGPW  +ED ++   +    +G  KWS IA ++PGR+GKQCRERW NHLDP + K  W+ EED  L   Q  HGN W++IA LLPGR+EN+VKNRWNS+A  R
Sbjct:    2 WTEEEDNRLREIVETFGAKNWKRLAM-LLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 194.126 bits (492), Expect = 2.451e-48
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0
Query:  130 GPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGL--TKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAA 280
            G  WT E+D +LR++V   G +NW+ ++ E    L +D QCL+RW KVLRPGL KGPW EEED+++ +C+  SG    KWS +A R+PGR+GKQCRERW NHLDPS+ K  WS EED+ +   QA  GN W +IA LLPGR+EN+VKNR+NS+A
Sbjct:   94 GGKWTKEEDTRLREIVEHHGARNWRMVA-EQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSA 246          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|224001504|ref|XP_002290424.1| (MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973846|gb|EED92176.1| MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 174.866 bits (442), Expect = 1.454e-47
Identity = 77/144 (53.47%), Postives = 106/144 (73.61%), Query Frame = 0
Query:  133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRW 276
            W++++D  LR+ V + G  ++K IS++ F G  T+ QC NRW K L+PGL+KG W  EEDA I++C+ SG+TKWSEIA+R+PGR+G+Q +E W+N+LDP V K  WS  E   L+  Q + GN W++IA L+PGRSENSVKNRW
Sbjct:    2 WSEQEDQYLRRAVHTLGENSFKMISEKVFHGTRTEVQCKNRWKKSLQPGLIKGKWSTEEDATIIKCVESGITKWSEIAKRLPGRIGEQVKEHWVNNLDPDVKKGVWSQTEMNTLINAQKQLGNRWSEIAKLIPGRSENSVKNRW 145          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|545363885|ref|XP_005647035.1| (Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169] >gi|384249008|gb|EIE22491.1| Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 174.481 bits (441), Expect = 4.118e-47
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 0
Query:  133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSA 279
            WT E+D  LR+ V+  G KNWKKI+ EHF+   TD QCL+RW KVL P LVKGPW  EED  I++ + R G  +WS IA+ +PGR+GKQCRERW NHLDP++ +  W+ EED  L+   A +GN WAKIA  LPGR++N++KN WNS 
Sbjct:   14 WTAEEDEVLRRAVSYYGAKNWKKIA-EHFED-RTDVQCLHRWQKVLNPELVKGPWTPEEDLKIIELVTRLGAKRWSLIAKDLPGRIGKQCRERWHNHLDPTIKRGDWTKEEDSMLVEKHAEYGNQWAKIAQFLPGRTDNAIKNHWNST 159          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|676384579|ref|XP_009035568.1| (hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens] >gi|323453633|gb|EGB09504.1| hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens])

HSP 1 Score: 173.326 bits (438), Expect = 1.460e-46
Identity = 82/161 (50.93%), Postives = 111/161 (68.94%), Query Frame = 0
Query:  130 GPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVI---LQCMRS----GLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
            G  W+DE+D +L ++V   G K WK+++ E    + TD QCL+RW KV++PGL KGPW  EED V+   +  M+S    G+ KW+EIA+ + GRLGKQCRERW NHLDP++ K  W   E++ L   Q ++GN W +IA  LPGRSEN++KNRWNS+AM R
Sbjct:   20 GGKWSDEEDKRLLQIVEENGAKKWKRVA-ELLGSVRTDIQCLHRWTKVIKPGLNKGPWSAEEDEVVKSNVMKMQSESNEGVVKWAEIAKILKGRLGKQCRERWFNHLDPTIKKGEWEPHENRTLFDLQQQYGNRWCEIAKALPGRSENAIKNRWNSSAMKR 179          
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|763782335|gb|KJB49406.1| (hypothetical protein B456_008G117400 [Gossypium raimondii])

HSP 1 Score: 178.333 bits (451), Expect = 1.019e-45
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 0
Query:  133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSA------AMARLR-GSVDRSP 292
            WT+E+D  L   V     KNWKKI         TD QCL+RW KVL P LVKGPW +EED +I + + + G  KWSEIA+ +PGR+GKQCRERW NHL+P + K+AW+++E+  L++    +GN WA+IA LLPGR+ENS+KN WNS+      AMA  R  +VD SP
Sbjct:   38 WTEEEDNMLTIAVQKFNGKNWKKIG-------ITDVQCLHRWQKVLNPDLVKGPWTKEEDDLIFELVEKQGKKKWSEIAKFLPGRIGKQCRERWCNHLNPDIKKTAWTVDEELILISAHGAYGNRWAEIAKLLPGRTENSIKNHWNSSVRKKVDAMAASRINAVDHSP 198          
The following BLAST results are available for this feature:
BLAST of EWM20993.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100989|gb|EWM20993.1|0.000e+0100.00myb-related 3r-1-like protein [Nannochloropsis gad... [more]
gi|585103684|gb|EWM22952.1|1.437e-6443.93myb-like protein [Nannochloropsis gaditana][more]
gi|585103683|gb|EWM22951.1|9.610e-6443.93myb-like protein [Nannochloropsis gaditana][more]
gi|585108315|gb|EWM26309.1|6.577e-5449.51transcriptional activator myb [Nannochloropsis gad... [more]
gi|676387185|ref|XP_009036871.1|1.681e-4853.25hypothetical protein AURANDRAFT_7821, partial [Aur... [more]
gi|298708729|emb|CBJ30691.1|2.451e-4855.84conserved unknown protein [Ectocarpus siliculosus][more]
gi|224001504|ref|XP_002290424.1|1.454e-4753.47MYB DNA binding protein/ transcription factor-like... [more]
gi|545363885|ref|XP_005647035.1|4.118e-4756.08Homeodomain-like protein, partial [Coccomyxa subel... [more]
gi|676384579|ref|XP_009035568.1|1.460e-4650.93hypothetical protein AURANDRAFT_24720, partial [Au... [more]
gi|763782335|gb|KJB49406.1|1.019e-4551.79hypothetical protein B456_008G117400 [Gossypium ra... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9711rna9711Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications