EWM20993.1, cds9680 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 1549.26 bits (4010), Expect = 0.000e+0 Identity = 757/757 (100.00%), Postives = 757/757 (100.00%), Query Frame = 0
Query: 1 MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR 757
MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR
Sbjct: 1 MPPDSVLSHLVITYTTLTQHCLFFDWPEFPVPSSRGNRLRLLYASNMMQNSKARPAGAVAPSIVSSPPPAAAAIASVPSGLKSMASSEPHLSTFLPVESNGRKRKSARNEVKEGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYGGLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQKKSAATTLGPKLNPTQTPTPAPAAAMPKLWSCFPGTAMLPAAAPAACPEKLFLENAPQAFRKRTRKDDQGAADALGRGSPLDVSSAVPLLHQLRMEPSPQTCHVPAQGKEPSDKASSKHHRSHEEPVMSSISPVNYEASQKGPTQRRESPPFKRDESFLSIPSKPMPRDSDALAYMTSSSLCSSAGTPSPSIEHAYSGLKSLALAVSSLSGLTSMSAPKHNNIRPDFTPGYTTYKREEQTQEQHVLSRGARLPAEAVATPSPSQSQGMRDVISLLFAALRREADTSRRTLLQDALDAATQEIPSMVNLVEGGLGSNAGIFSLARESDRIFMLDQLMTAAHRGVFRPCNRR 757
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana]) HSP 1 Score: 231.876 bits (590), Expect = 1.437e-64 Identity = 123/280 (43.93%), Postives = 161/280 (57.50%), Query Frame = 0
Query: 129 PGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407
PG WT ++D +LRK V + G NW IS + + QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK W+ EEDK L G+ +GNAWAKIA LLPGR ENS+KNRW SA A+ R V PP WD E++ + ++C +S RK + D + ++ L +P Y L + + LH RL L+REA KY P L R LRRA+
Sbjct: 61 PGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 308
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana]) HSP 1 Score: 232.261 bits (591), Expect = 9.610e-64 Identity = 123/280 (43.93%), Postives = 161/280 (57.50%), Query Frame = 0
Query: 129 PGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407
PG WT ++D +LRK V + G NW IS + + QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK W+ EEDK L G+ +GNAWAKIA LLPGR ENS+KNRW SA A+ R V PP WD E++ + ++C +S RK + D + ++ L +P Y L + + LH RL L+REA KY P L R LRRA+
Sbjct: 161 PGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 408
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana]) HSP 1 Score: 210.305 bits (534), Expect = 6.577e-54 Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 0
Query: 90 HLSTFLPVESNGRK----------RKSARNEVKEGEDPRLVSVDEDEADPGPS--WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
H+++ P+ +G++ KS + + E+ R + E + PG W+ E+DA LR VAS+GP+ WK+IS E +G +D QCL+RW KVL+PGLVKGPW EED +IL+C++ G KW+ IA+ IPGRLGKQCRERW N+LDP++ K W+ EED+ L QA+ GNAW KIA LPGRSEN+VKNRWNS+ R
Sbjct: 111 HVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens]) HSP 1 Score: 177.948 bits (450), Expect = 1.681e-48 Identity = 82/154 (53.25%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMR---SGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
WT+E+D +LR++V + G KNWK+++ + +D QCL+RW KVLRPGL KGPW +ED ++ + +G KWS IA ++PGR+GKQCRERW NHLDP + K W+ EED L Q HGN W++IA LLPGR+EN+VKNRWNS+A R
Sbjct: 2 WTEEEDNRLREIVETFGAKNWKRLAM-LLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 194.126 bits (492), Expect = 2.451e-48 Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0
Query: 130 GPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGL--TKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAA 280
G WT E+D +LR++V G +NW+ ++ E L +D QCL+RW KVLRPGL KGPW EEED+++ +C+ SG KWS +A R+PGR+GKQCRERW NHLDPS+ K WS EED+ + QA GN W +IA LLPGR+EN+VKNR+NS+A
Sbjct: 94 GGKWTKEEDTRLREIVEHHGARNWRMVA-EQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSA 246
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|224001504|ref|XP_002290424.1| (MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973846|gb|EED92176.1| MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 174.866 bits (442), Expect = 1.454e-47 Identity = 77/144 (53.47%), Postives = 106/144 (73.61%), Query Frame = 0
Query: 133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRW 276
W++++D LR+ V + G ++K IS++ F G T+ QC NRW K L+PGL+KG W EEDA I++C+ SG+TKWSEIA+R+PGR+G+Q +E W+N+LDP V K WS E L+ Q + GN W++IA L+PGRSENSVKNRW
Sbjct: 2 WSEQEDQYLRRAVHTLGENSFKMISEKVFHGTRTEVQCKNRWKKSLQPGLIKGKWSTEEDATIIKCVESGITKWSEIAKRLPGRIGEQVKEHWVNNLDPDVKKGVWSQTEMNTLINAQKQLGNRWSEIAKLIPGRSENSVKNRW 145
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|545363885|ref|XP_005647035.1| (Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169] >gi|384249008|gb|EIE22491.1| Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 174.481 bits (441), Expect = 4.118e-47 Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 0
Query: 133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSA 279
WT E+D LR+ V+ G KNWKKI+ EHF+ TD QCL+RW KVL P LVKGPW EED I++ + R G +WS IA+ +PGR+GKQCRERW NHLDP++ + W+ EED L+ A +GN WAKIA LPGR++N++KN WNS
Sbjct: 14 WTAEEDEVLRRAVSYYGAKNWKKIA-EHFED-RTDVQCLHRWQKVLNPELVKGPWTPEEDLKIIELVTRLGAKRWSLIAKDLPGRIGKQCRERWHNHLDPTIKRGDWTKEEDSMLVEKHAEYGNQWAKIAQFLPGRTDNAIKNHWNST 159
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|676384579|ref|XP_009035568.1| (hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens] >gi|323453633|gb|EGB09504.1| hypothetical protein AURANDRAFT_24720, partial [Aureococcus anophagefferens]) HSP 1 Score: 173.326 bits (438), Expect = 1.460e-46 Identity = 82/161 (50.93%), Postives = 111/161 (68.94%), Query Frame = 0
Query: 130 GPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVI---LQCMRS----GLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283
G W+DE+D +L ++V G K WK+++ E + TD QCL+RW KV++PGL KGPW EED V+ + M+S G+ KW+EIA+ + GRLGKQCRERW NHLDP++ K W E++ L Q ++GN W +IA LPGRSEN++KNRWNS+AM R
Sbjct: 20 GGKWSDEEDKRLLQIVEENGAKKWKRVA-ELLGSVRTDIQCLHRWTKVIKPGLNKGPWSAEEDEVVKSNVMKMQSESNEGVVKWAEIAKILKGRLGKQCRERWFNHLDPTIKKGEWEPHENRTLFDLQQQYGNRWCEIAKALPGRSENAIKNRWNSSAMKR 179
BLAST of EWM20993.1 vs. NCBI_GenBank
Match: gi|763782335|gb|KJB49406.1| (hypothetical protein B456_008G117400 [Gossypium raimondii]) HSP 1 Score: 178.333 bits (451), Expect = 1.019e-45 Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 0
Query: 133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCM-RSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSA------AMARLR-GSVDRSP 292
WT+E+D L V KNWKKI TD QCL+RW KVL P LVKGPW +EED +I + + + G KWSEIA+ +PGR+GKQCRERW NHL+P + K+AW+++E+ L++ +GN WA+IA LLPGR+ENS+KN WNS+ AMA R +VD SP
Sbjct: 38 WTEEEDNMLTIAVQKFNGKNWKKIG-------ITDVQCLHRWQKVLNPDLVKGPWTKEEDDLIFELVEKQGKKKWSEIAKFLPGRIGKQCRERWCNHLNPDIKKTAWTVDEELILISAHGAYGNRWAEIAKLLPGRTENSIKNHWNSSVRKKVDAMAASRINAVDHSP 198 The following BLAST results are available for this feature:
BLAST of EWM20993.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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