EWM21011.1, cds9655 (CDS) Nannochloropsis gaditana

Overview
NameEWM21011.1
Unique Namecds9655
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:157874..158032 +
Alignment locationKK037255.1:158251..159024 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21011.1
ProductGCK domain-containing protein
Orig transcript idgnl|cribi|Naga_100081g2.758.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:157874..158032 +
KK037255.1supercontigKK037255.1:158251..159024 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012891GCK
Homology
BLAST of EWM21011.1 vs. NCBI_GenBank
Match: gi|553182906|ref|XP_005853805.1| (hypothetical protein NGA_0370602 [Nannochloropsis gaditana CCMP526] >gi|553189092|ref|XP_005854929.1| hypothetical protein NGA_0370601 [Nannochloropsis gaditana CCMP526] >gi|422294131|gb|EKU21431.1| hypothetical protein NGA_0370601 [Nannochloropsis gaditana CCMP526] >gi|422295254|gb|EKU22553.1| hypothetical protein NGA_0370602 [Nannochloropsis gaditana CCMP526] >gi|585101009|gb|EWM21011.1| GCK domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MFRFQSCARQAARRAFVSAASMAPRAHQAPHFVAAGITGAGTCLLLAHSMPAQADAALPATDTSSASPSTSFTITARLSKSGASKEEKAKPSQSSSSSEPHPASPEGRPLTPAGDIAAVLSEMEEEDEGRYDSVELEETECPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLRNALLGGADVEEGEGDEAEEKDGAKGVTEGGDKDRGEDILQSSSTSSTGGKSDRLKKNFTLHEDHEETDQSEGDEHPVKSASPGALPPSRSPNGAEEGESEDGNAEGPIKK 310
            MFRFQSCARQAARRAFVSAASMAPRAHQAPHFVAAGITGAGTCLLLAHSMPAQADAALPATDTSSASPSTSFTITARLSKSGASKEEKAKPSQSSSSSEPHPASPEGRPLTPAGDIAAVLSEMEEEDEGRYDSVELEETECPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLRNALLGGADVEEGEGDEAEEKDGAKGVTEGGDKDRGEDILQSSSTSSTGGKSDRLKKNFTLHEDHEETDQSEGDEHPVKSASPGALPPSRSPNGAEEGESEDGNAEGPIKK
Sbjct:    1 MFRFQSCARQAARRAFVSAASMAPRAHQAPHFVAAGITGAGTCLLLAHSMPAQADAALPATDTSSASPSTSFTITARLSKSGASKEEKAKPSQSSSSSEPHPASPEGRPLTPAGDIAAVLSEMEEEDEGRYDSVELEETECPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLRNALLGGADVEEGEGDEAEEKDGAKGVTEGGDKDRGEDILQSSSTSSTGGKSDRLKKNFTLHEDHEETDQSEGDEHPVKSASPGALPPSRSPNGAEEGESEDGNAEGPIKK 310          
BLAST of EWM21011.1 vs. NCBI_GenBank
Match: gi|922369189|ref|XP_013456759.1| (GCK domain protein [Medicago truncatula] >gi|657389012|gb|KEH30790.1| GCK domain protein [Medicago truncatula])

HSP 1 Score: 60.4622 bits (145), Expect = 4.667e-7
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 0
Query:  141 CPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLR 200
            C  C FM+   C  T++ WE C+   + K ED V  CA VT KL +C+ +H + + P LR
Sbjct:   47 CGFCLFMKGGGCKDTFINWEDCVKEAEDKNEDLVEKCAEVTAKLKQCMDEHSDYYEPILR 106          
BLAST of EWM21011.1 vs. NCBI_GenBank
Match: gi|1117326762|ref|XP_019432150.1| (PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like [Lupinus angustifolius] >gi|1102722519|gb|OIW21015.1| hypothetical protein TanjilG_27378 [Lupinus angustifolius])

HSP 1 Score: 58.5362 bits (140), Expect = 6.711e-7
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 0
Query:  141 CPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLR 200
            C  C FM+A  C   ++ WE CI   +  +ED V  CA+VT  L +C+  H + + P LR
Sbjct:   55 CGFCLFMKAGGCKDAFIDWENCIEEAEKNKEDIVEKCAKVTAVLKQCMDSHSDYYEPILR 114          
BLAST of EWM21011.1 vs. NCBI_GenBank
Match: gi|922369187|ref|XP_013456758.1| (GCK domain protein [Medicago truncatula] >gi|657389011|gb|KEH30789.1| GCK domain protein [Medicago truncatula])

HSP 1 Score: 60.8474 bits (146), Expect = 7.038e-7
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 0
Query:  141 CPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLR 200
            C  C FM+   C  T++ WE C+   + K ED V  CA VT KL +C+ +H + + P LR
Sbjct:   47 CGFCLFMKGGGCKDTFINWEDCVKEAEDKNEDLVEKCAEVTAKLKQCMDEHSDYYEPILR 106          
BLAST of EWM21011.1 vs. NCBI_GenBank
Match: gi|502182887|ref|XP_004517013.1| (PREDICTED: myb-like protein X [Cicer arietinum])

HSP 1 Score: 60.077 bits (144), Expect = 9.345e-7
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0
Query:  141 CPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLR 200
            C  C FM+   C  T+V WE C+   + K ED V  C++VT +L +C+  H + + P LR
Sbjct:   59 CGFCLFMKGGGCKDTFVDWENCVKEAEDKNEDLVEKCSQVTARLKQCMDAHSDYYEPILR 118          
The following BLAST results are available for this feature:
BLAST of EWM21011.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|553182906|ref|XP_005853805.1|0.000e+0100.00hypothetical protein NGA_0370602 [Nannochloropsis ... [more]
gi|922369189|ref|XP_013456759.1|4.667e-740.00GCK domain protein [Medicago truncatula] >gi|65738... [more]
gi|1117326762|ref|XP_019432150.1|6.711e-738.33PREDICTED: actin cytoskeleton-regulatory complex p... [more]
gi|922369187|ref|XP_013456758.1|7.038e-740.00GCK domain protein [Medicago truncatula] >gi|65738... [more]
gi|502182887|ref|XP_004517013.1|9.345e-738.33PREDICTED: myb-like protein X [Cicer arietinum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9686rna9686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications