EWM21029.1, cds9642 (CDS) Nannochloropsis gaditana

Overview
NameEWM21029.1
Unique Namecds9642
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:115890..116197 -
Alignment locationKK037255.1:115134..115710 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21029.1
Productabc transporter-like protein
Orig transcript idgnl|cribi|Naga_100478g4.9246.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:115890..116197 -
KK037255.1supercontigKK037255.1:115134..115710 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|585101034|gb|EWM21029.1| (abc transporter-like protein [Nannochloropsis gaditana])

HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MSFLEGTSLSRLEDGEVQRRKRQGGKEGGRVGRRRRWLTRVVTLGMAGREGGGEGVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVKKGRTSVGREDEDVLDLSRAVTL 294
            MSFLEGTSLSRLEDGEVQRRKRQGGKEGGRVGRRRRWLTRVVTLGMAGREGGGEGVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVKKGRTSVGREDEDVLDLSRAVTL
Sbjct:    1 MSFLEGTSLSRLEDGEVQRRKRQGGKEGGRVGRRRRWLTRVVTLGMAGREGGGEGVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVKKGRTSVGREDEDVLDLSRAVTL 294          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|873232028|emb|CEM06643.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 152.14 bits (383), Expect = 4.393e-38
Identity = 78/214 (36.45%), Postives = 116/214 (54.21%), Query Frame = 0
Query:   56 VGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCD-CFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKRE 268
            V E        L  R+Q+++ + +  ++A+AWG M++  D    ADPHPGN L+M    LG+LDWGQ K LD PL+ +LA  ++ +                       + R ++RI +    LG+  E   +   + +M  SMFDTR +P  C N F  D+ L +NAV+ FP DL +VLR+ Q+LRG+S GL +D  L   WAP A+ FL+ +
Sbjct:  340 VAESNNNAVRRLSPRMQQRLLRRITMRIADAWGVMIFSQDGLHHADPHPGNFLIMPRGHLGLLDWGQVKALDQPLQRRLASFVLDL-----------------------KSRQRDRIAQGLLDLGIHVEDPSNNATLERMAVSMFDTRKMPGVCFNIFSPDYTLKSNAVLGFPQDLFFVLRSCQLLRGLSTGLSIDLALCDRWAPHAKRFLREQ 530          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|299116097|emb|CBN74513.1| (ABC transporter-like protein [Ectocarpus siliculosus])

HSP 1 Score: 137.502 bits (345), Expect = 1.578e-33
Identity = 76/213 (35.68%), Postives = 108/213 (50.70%), Query Frame = 0
Query:   72 QKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMK-------------------NFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFL 265
            +K+IG+ L+ ++A+AWG+M++    F ADPHPGNIL+M                      R+G+LDWGQTK+L    + K+A L++A                       V       I R F  LGV     DDA+ + K+   MFDTR +     NPF  ++ L  N+V+ +P DL ++LRTV + RGM+  LGV+F L   WAP A   L
Sbjct:  307 RKRIGKSLLHELADAWGFMIFEEGLFNADPHPGNILIMPEEQVGPIKRGFGLLGLRTPKLRIGLLDWGQTKELGRQDREKVANLILA-----------------------VSSHASPDIVRCFNGLGVKLSNPDDADSIEKLALVMFDTRTIKGLDFNPFSDNNVLKLNSVLEYPQDLYFILRTVLMFRGMAQSLGVEFSLADKWAPHARRLL 496          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|971516547|dbj|GAQ81635.1| (Protein kinase superfamily protein [Klebsormidium nitens])

HSP 1 Score: 132.494 bits (332), Expect = 2.947e-31
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 0
Query:   65 GLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCG-NPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFL 265
            GL+  R +++I    +E +  A+G+M+     FQADPHPGNI++ K  ++G+LD+GQTK+L   L+ + ARL++A+++                       RD+  I   F  LG+ TE+  D      M   MFDTR   +    NPF  +  +  N V  FP DL +VLRTVQ+LRG++ G+G+D+ + + W P+A+E L
Sbjct:  404 GLVARRAKRRI----LEDLTAAYGHMILRDGFFQADPHPGNIIVCKGGKVGLLDYGQTKRLPERLRLQYARLVLALNE-----------------------RDELAITDAFRALGIRTEKPPDVHSFSNMAGLMFDTRMPKDRESLNPFTDESEIQKNPVTEFPKDLFFVLRTVQLLRGLTMGMGIDWSVAEAWKPLADEVL 578          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|1175874565|ref|XP_020590905.1| (uncharacterized protein LOC110031832 [Phalaenopsis equestris])

HSP 1 Score: 121.709 bits (304), Expect = 1.095e-27
Identity = 72/217 (33.18%), Postives = 111/217 (51.15%), Query Frame = 0
Query:   53 GEGVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPN--FCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKR 267
            G  + + G   GG L    ++KI    +E +  A+G M+     F ADPHPGNIL+ K+ ++ +LD+GQ K L   L+   A L++A+         +  +E                       LG+ T   DD EE+ ++   MFDT+ +P      +PF +D +L   +V SFP +L  VLRT+Q+LRG+S G+G+ +   + W P+AEE L R
Sbjct:  290 GHVIAQRGIDPGGKLATAAKRKI----LENLTLAYGQMILKSGFFHADPHPGNILICKDSKVALLDYGQVKNLPDNLRLGFANLVIAIADKNPTKAAQSYRE-----------------------LGIETLNSDDVEELFQLAIKMFDTK-LPRGMTVLSPFSEDSSLKKISVQSFPEELFSVLRTMQLLRGLSVGMGISYSCAEQWRPLAEEALYR 478          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|643720706|gb|KDP30970.1| (hypothetical protein JCGZ_11346 [Jatropha curcas])

HSP 1 Score: 117.087 bits (292), Expect = 2.049e-27
Identity = 64/190 (33.68%), Postives = 101/190 (53.16%), Query Frame = 0
Query:   77 QGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCG-NPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFL 265
            Q +++ +  A+G M+     F ADPHPGNIL+ K   + +LD+GQ K L   L+   A L++AM   +     E  +E G                     +G ++  E++ +E+ K+  +MFDT+  P      PF +D ++   AV +FP +L  VLRTV +LRG+S GLG+++   + W P+AEE L
Sbjct:   83 QNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDSLRLGYANLVLAMADNDPIKASESYRELG---------------------IGTLSSCENELQELLKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVEAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRPIAEEAL 251          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|568846261|ref|XP_006476975.1| (PREDICTED: uncharacterized protein slr0889 isoform X1 [Citrus sinensis])

HSP 1 Score: 120.553 bits (301), Expect = 2.314e-27
Identity = 75/228 (32.89%), Postives = 118/228 (51.75%), Query Frame = 0
Query:   55 GVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCG-NPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVK-KGRTSVGR 280
             +G+   K G   G ++     Q +++ +  A+G M+     F ADPHPGNIL+ K   + +LD+GQ K L   L+   ARL++A+   +  G  E  +E G E                      +++ ED+ +E+ K+  +MFDT+  P      PF +D ++   AV +FP +L  VLRTV +LRG+S GLG+++   + W P+AEE L     +K K R + GR
Sbjct:  262 NLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELGIE---------------------TLSKCEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVRAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRPIAEEALYLAGRIKDKDRKTKGR 468          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|568846263|ref|XP_006476976.1| (PREDICTED: uncharacterized protein slr0889 isoform X2 [Citrus sinensis])

HSP 1 Score: 119.783 bits (299), Expect = 3.746e-27
Identity = 75/228 (32.89%), Postives = 118/228 (51.75%), Query Frame = 0
Query:   55 GVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCG-NPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVK-KGRTSVGR 280
             +G+   K G   G ++     Q +++ +  A+G M+     F ADPHPGNIL+ K   + +LD+GQ K L   L+   ARL++A+   +  G  E  +E G E                      +++ ED+ +E+ K+  +MFDT+  P      PF +D ++   AV +FP +L  VLRTV +LRG+S GLG+++   + W P+AEE L     +K K R + GR
Sbjct:  249 NLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELGIE---------------------TLSKCEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVRAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRPIAEEALYLAGRIKDKDRKTKGR 455          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|375332075|gb|AFA52577.1| (ABC transporter-like protein [Vaucheria litorea])

HSP 1 Score: 120.939 bits (302), Expect = 4.632e-27
Identity = 68/218 (31.19%), Postives = 105/218 (48.17%), Query Frame = 0
Query:   71 LQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKN--------------------FRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKRE 268
            L+K+IG  L++ +A AWGYM++    F AD HPGNI++M                        +G+LDWGQ K+LD   + + ARL+ A+                        ++ Q+ +   F  LG+     ++++ + K+   MFD R +     NPF +D+ +  N +  +P DL +VLR   + RGMS  L V F L   WAP A +FLK +
Sbjct:  440 LRKRIGGRLLKTLAGAWGYMIFQEGLFNADLHPGNIVIMPEGRAWGPVGLVLGLVGLNTPALSVGLLDWGQVKELDEGSRERFARLVCAI----------------------ANKKSQDEVVEAFKGLGIKIADPNNSDSIEKLALVMFDARNIDGANLNPFSQDNIMKQNRIKQYPQDLYFVLRAAIMFRGMSESLKVPFSLANAWAPYATKFLKSQ 635          
BLAST of EWM21029.1 vs. NCBI_GenBank
Match: gi|573917872|ref|XP_006646578.1| (PREDICTED: uncharacterized protein slr0889-like [Oryza brachyantha])

HSP 1 Score: 119.398 bits (298), Expect = 6.657e-27
Identity = 73/230 (31.74%), Postives = 112/230 (48.70%), Query Frame = 0
Query:   48 GREGGGEGVGEGGGKGGGLLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREGGKEGGKEGGKEGGVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCG-NPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKREAAVKKGRT 276
            G E    G+  GG         ++     Q ++  +  A+G M+     F ADPHPGNIL+ KN  + +LD+GQ K +   L+   A L++AM   +    KE  +E G E                          +++ EE+ ++   MFDTR  P     +PF +D +L+   V SFP +L  VLRT+Q+LRG++ G+G+ F   Q W P+AEE L +   +K  R+
Sbjct:  266 GSEMAKRGIDPGG---------KIATMAKQKILTDLTLAYGQMILKDGFFHADPHPGNILICKNTEVALLDYGQVKAMPDDLRLAYANLVIAMADDDFLRTKESFREIGIETWSIA---------------------DNELEELFQLSLRMFDTRLPPGVTAMSPFAEDSSLNKVGVQSFPEELFSVLRTIQLLRGLTVGMGLRFSCAQQWKPIAEEALLKSGRLKAARS 465          
The following BLAST results are available for this feature:
BLAST of EWM21029.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101034|gb|EWM21029.1|0.000e+0100.00abc transporter-like protein [Nannochloropsis gadi... [more]
gi|873232028|emb|CEM06643.1|4.393e-3836.45unnamed protein product [Vitrella brassicaformis C... [more]
gi|299116097|emb|CBN74513.1|1.578e-3335.68ABC transporter-like protein [Ectocarpus siliculos... [more]
gi|971516547|dbj|GAQ81635.1|2.947e-3136.14Protein kinase superfamily protein [Klebsormidium ... [more]
gi|1175874565|ref|XP_020590905.1|1.095e-2733.18uncharacterized protein LOC110031832 [Phalaenopsis... [more]
gi|643720706|gb|KDP30970.1|2.049e-2733.68hypothetical protein JCGZ_11346 [Jatropha curcas][more]
gi|568846261|ref|XP_006476975.1|2.314e-2732.89PREDICTED: uncharacterized protein slr0889 isoform... [more]
gi|568846263|ref|XP_006476976.1|3.746e-2732.89PREDICTED: uncharacterized protein slr0889 isoform... [more]
gi|375332075|gb|AFA52577.1|4.632e-2731.19ABC transporter-like protein [Vaucheria litorea][more]
gi|573917872|ref|XP_006646578.1|6.657e-2731.74PREDICTED: uncharacterized protein slr0889-like [O... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9673rna9673Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications