EWM21036.1, cds9637 (CDS) Nannochloropsis gaditana

Overview
NameEWM21036.1
Unique Namecds9637
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:105093..105099 +
Alignment locationKK037255.1:105340..105674 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21036.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100422g2.3150.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:105093..105099 +
KK037255.1supercontigKK037255.1:105340..105674 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM21036.1 vs. NCBI_GenBank
Match: gi|585101044|gb|EWM21036.1| (hypothetical protein Naga_100422g2 [Nannochloropsis gaditana])

HSP 1 Score: 232.261 bits (591), Expect = 2.050e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 
Query:    1 MDVYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMGA 113
            MDVYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMGA
Sbjct:    1 MDVYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMGA 113
[Close]
BLAST of EWM21036.1 vs. NCBI_GenBank
Match: gi|553192089|ref|XP_005855512.1| (hypothetical protein NGA_0639700, partial [Nannochloropsis gaditana CCMP526] >gi|422293551|gb|EKU20851.1| hypothetical protein NGA_0639700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.098 bits (575), Expect = 4.346e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    3 VYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMG 112
            VYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMG
Sbjct:    2 VYSQQTSVVEHSLLSSRQNCHGRSADACVGVRRQAQAVQCLSPDIMAHTSDVAAGTSESKCFPSIPAENTCSTDPSRRKGARRTLAVAVVGCLCLGWASAFRPSFPGQMG 111
The following BLAST results are available for this feature:
BLAST of EWM21036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101044|gb|EWM21036.1|2.050e-77100.00hypothetical protein Naga_100422g2 [Nannochloropsi... [more]
gi|553192089|ref|XP_005855512.1|4.346e-74100.00hypothetical protein NGA_0639700, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9668rna9668Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications