EWM21058.1, cds9616 (CDS) Nannochloropsis gaditana

Overview
NameEWM21058.1
Unique Namecds9616
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:50142..50207 -
Alignment locationKK037255.1:49965..50039 -
Alignment locationKK037255.1:49635..49820 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21058.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101462g2.3665.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:50142..50207 -
KK037255.1supercontigKK037255.1:49965..50039 -
KK037255.1supercontigKK037255.1:49635..49820 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Homology
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|585101081|gb|EWM21058.1| (hypothetical protein Naga_101462g2 [Nannochloropsis gaditana])

HSP 1 Score: 218.394 bits (555), Expect = 5.081e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108
            MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK
Sbjct:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|553182789|ref|XP_005853785.1| (hypothetical protein NGA_0469800 [Nannochloropsis gaditana CCMP526] >gi|422295276|gb|EKU22575.1| hypothetical protein NGA_0469800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 172.555 bits (436), Expect = 5.017e-54
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0
Query:   20 YAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108
            +A   +FEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK
Sbjct:    2 WACPRNFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 90          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|298705858|emb|CBJ29003.1| (thylakoid lumenal protein [Ectocarpus siliculosus])

HSP 1 Score: 150.984 bits (380), Expect = 3.437e-44
Identity = 69/107 (64.49%), Postives = 91/107 (85.05%), Query Frame = 0
Query:    2 AEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108
            +E  F K +FKE V+SKAYA+++++E ADF+NAVVDRVSFDGS++KG+IF NAVL+ TSF GAD+ ++DFT+ YMG+F+ + LCKNPTLKGTNPVT A T+ SAGC+
Sbjct:   91 SEANFSKGDFKEVVMSKAYARSSNWEEADFTNAVVDRVSFDGSSMKGAIFQNAVLTSTSFTGADVENADFTEAYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 197          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|551556044|ref|XP_005765169.1| (hypothetical protein EMIHUDRAFT_419713 [Emiliania huxleyi CCMP1516] >gi|485615060|gb|EOD12740.1| hypothetical protein EMIHUDRAFT_419713 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 141.739 bits (356), Expect = 1.684e-41
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 107
            M +G F   NFKE+ LSKAYA  A F+GADFSN VVDR  F+G++ KG++FSNAVLSGT+F  ADL+D+D+TD Y+G F+ ++LCKNPTL+G N  T APT+ESAGC
Sbjct:   16 MEKGDFSGTNFKESQLSKAYAPGAKFDGADFSNGVVDRAYFNGASFKGAVFSNAVLSGTTFENADLSDTDWTDAYIGMFDQKKLCKNPTLQGENAKTGAPTRESAGC 122          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|551605954|ref|XP_005784348.1| (hypothetical protein EMIHUDRAFT_442035 [Emiliania huxleyi CCMP1516] >gi|485637431|gb|EOD31919.1| hypothetical protein EMIHUDRAFT_442035 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 142.124 bits (357), Expect = 2.823e-41
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 107
            M +G F   NFKE+ LSKAYA  A F+GADFSN VVDR  F+G++ KG++FSNAVLSGT+F  ADL+D+D+TD Y+G F+ ++LCKNPTL+G N  T APT+ESAGC
Sbjct:   34 MEKGDFSGTNFKESQLSKAYAPGAKFDGADFSNGVVDRAYFNGASFKGAVFSNAVLSGTTFENADLSDTDWTDAYIGMFDQKKLCKNPTLQGENAKTGAPTRESAGC 140          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|551636040|ref|XP_005820848.1| (hypothetical protein GUITHDRAFT_155908 [Guillardia theta CCMP2712] >gi|428164857|gb|EKX33868.1| hypothetical protein GUITHDRAFT_155908 [Guillardia theta CCMP2712])

HSP 1 Score: 141.739 bits (356), Expect = 4.775e-40
Identity = 66/108 (61.11%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108
            M +G F KV FK+AV+SK +A  A F+GADFSNAV+DR ++  S+ KG+IF+NAVLSG+ F G+DLTDSDF+DTYMG+F+ +++CKNPTL+GTNPVT   T+ SA C+
Sbjct:  129 MQKGDFSKVKFKDAVMSKVFADEATFDGADFSNAVMDRGTWRKSSFKGAIFANAVLSGSEFEGSDLTDSDFSDTYMGDFDNKKICKNPTLQGTNPVTGVDTRASASCR 236          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|88770664|gb|ABD51935.1| (chloroplast thylakoid 11 kDa protein, partial [Guillardia theta])

HSP 1 Score: 141.739 bits (356), Expect = 6.784e-40
Identity = 66/108 (61.11%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 108
            M +G F KV FK+AV+SK +A  A F+GADFSNAV+DR ++  S+ KG+IF+NAVLSG+ F G+DLTDSDF+DTYMG+F+ +++CKNPTL+GTNPVT   T+ SA C+
Sbjct:  134 MQKGDFSKVKFKDAVMSKVFADEATFDGADFSNAVMDRGTWRKSSFKGAIFANAVLSGSEFEGSDLTDSDFSDTYMGDFDNKKICKNPTLQGTNPVTGVDTRASASCR 241          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|551605933|ref|XP_005784338.1| (hypothetical protein EMIHUDRAFT_418190 [Emiliania huxleyi CCMP1516] >gi|485637421|gb|EOD31909.1| hypothetical protein EMIHUDRAFT_418190 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 135.576 bits (340), Expect = 1.377e-38
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDG--------SNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 107
            M +G F   NFKE+ LSKAYA  A F+GADFSN VVDR  F+G        S L G++FSNAVLSGT+F  ADL+D+D+TD Y+G F+ ++LCKNPTL+G N  T APT+ESAGC
Sbjct:   34 MEKGDFSGTNFKESQLSKAYAPGAKFDGADFSNGVVDRAYFNGASFKARLGSRLAGAVFSNAVLSGTTFENADLSDTDWTDAYIGMFDQKKLCKNPTLQGENAKTGAPTRESAGC 148          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|397595313|gb|EJK56448.1| (hypothetical protein THAOC_23663 [Thalassiosira oceanica])

HSP 1 Score: 135.961 bits (341), Expect = 8.125e-38
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 107
            M++    K NF+EA  SK Y + ++FE ADF+NA+VDR +F GS+LKG+IFSNAVL+ TSF GAD+ ++DFTD Y+G+F++R LCKNPTLKG NP+T A T+ SA C
Sbjct:  128 MSKTDLSKANFREAQFSKGYLRDSNFEEADFTNAIVDRATFKGSSLKGTIFSNAVLTATSFEGADVENADFTDAYIGDFDIRNLCKNPTLKGENPLTGADTRLSANC 234          
BLAST of EWM21058.1 vs. NCBI_GenBank
Match: gi|1072227622|gb|OEU12361.1| (hypothetical protein FRACYDRAFT_191563 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.88 bits (333), Expect = 7.713e-37
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 0
Query:    1 MAEGTFKKVNFKEAVLSKAYAKAADFEGADFSNAVVDRVSFDGSNLKGSIFSNAVLSGTSFVGADLTDSDFTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 107
            M +    KVNF+EA  SKAY   ++FE ADFSNA+VDR SF GS+L+G++F NAVL+GTSF GAD+ ++DFT+  +G F+L+ LCKNPTLKG NP+T A T  S GC
Sbjct:  102 MTKTDVSKVNFQEAQFSKAYLHESNFEQADFSNAIVDRASFAGSSLRGAVFQNAVLTGTSFAGADVENADFTEAAIGSFDLKNLCKNPTLKGENPITGADTYLSVGC 208          
The following BLAST results are available for this feature:
BLAST of EWM21058.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101081|gb|EWM21058.1|5.081e-72100.00hypothetical protein Naga_101462g2 [Nannochloropsi... [more]
gi|553182789|ref|XP_005853785.1|5.017e-5494.38hypothetical protein NGA_0469800 [Nannochloropsis ... [more]
gi|298705858|emb|CBJ29003.1|3.437e-4464.49thylakoid lumenal protein [Ectocarpus siliculosus][more]
gi|551556044|ref|XP_005765169.1|1.684e-4162.62hypothetical protein EMIHUDRAFT_419713 [Emiliania ... [more]
gi|551605954|ref|XP_005784348.1|2.823e-4162.62hypothetical protein EMIHUDRAFT_442035 [Emiliania ... [more]
gi|551636040|ref|XP_005820848.1|4.775e-4061.11hypothetical protein GUITHDRAFT_155908 [Guillardia... [more]
gi|88770664|gb|ABD51935.1|6.784e-4061.11chloroplast thylakoid 11 kDa protein, partial [Gui... [more]
gi|551605933|ref|XP_005784338.1|1.377e-3859.13hypothetical protein EMIHUDRAFT_418190 [Emiliania ... [more]
gi|397595313|gb|EJK56448.1|8.125e-3858.88hypothetical protein THAOC_23663 [Thalassiosira oc... [more]
gi|1072227622|gb|OEU12361.1|7.713e-3758.88hypothetical protein FRACYDRAFT_191563 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9647rna9647Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications