EWM30595.1, cds96 (CDS) Nannochloropsis gaditana

Overview
NameEWM30595.1
Unique Namecds96
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:260889..261041 -
Alignment locationCM002455.1:260031..260606 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30595.1
Productperoxisomal membrane protein 2
Orig transcript idgnl|cribi|Naga_100033g21.8434.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:260889..261041 -
CM002455.1supercontigCM002455.1:260031..260606 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|585113262|gb|EWM30595.1| (peroxisomal membrane protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 489.574 bits (1259), Expect = 5.463e-175
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSVVLMRKRY 242
            MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSVVLMRKRY
Sbjct:    1 MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSVVLMRKRY 242          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|553181362|ref|XP_005853552.1| (integral membrane mpv17 pmp22, partial [Nannochloropsis gaditana CCMP526] >gi|422295512|gb|EKU22811.1| integral membrane mpv17 pmp22, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 475.322 bits (1222), Expect = 2.359e-169
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSV 235
            MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSV
Sbjct:    1 MASELNEEDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPASMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAGGRASSV 235          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|695382429|ref|XP_009517398.1| (hypothetical protein PHYSODRAFT_323562 [Phytophthora sojae] >gi|348690309|gb|EGZ30123.1| hypothetical protein PHYSODRAFT_323562 [Phytophthora sojae])

HSP 1 Score: 139.813 bits (351), Expect = 5.520e-38
Identity = 78/168 (46.43%), Postives = 105/168 (62.50%), Query Frame = 0
Query:   57 LLRAYHHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            L + Y   L T P+ TKA+TSA ++ LG++L      K  RG S R+ L FF FGG VTGP+ HYWYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F YV P  RVL+GN VALWW+ YLS
Sbjct:    3 LQKRYQLALQTNPLRTKAVTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGAVTGPVLHYWYGYLETQ-RVTKEKLTPNKKLLLDRLLFTPPMVAFTIFSLGVMRGSSPKASRENLSRVYWGALLMNWKVWTLTQWLSFHYVPPLLRVLWGNCVALWWNSYLS 169          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|570968075|gb|ETP31194.1| (hypothetical protein F442_19910 [Phytophthora parasitica P10297])

HSP 1 Score: 143.665 bits (361), Expect = 1.923e-37
Identity = 75/163 (46.01%), Postives = 103/163 (63.19%), Query Frame = 0
Query:   62 HHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            H  L    + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F YV P +RVL+GN VALWW+ YLS
Sbjct:  192 HRVLCNVAIRTKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHYVPPQFRVLWGNCVALWWNSYLS 353          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|568005919|gb|ETL80196.1| (hypothetical protein L917_19279 [Phytophthora parasitica])

HSP 1 Score: 143.665 bits (361), Expect = 2.093e-37
Identity = 75/163 (46.01%), Postives = 103/163 (63.19%), Query Frame = 0
Query:   62 HHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            H  L    + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F YV P +RVL+GN VALWW+ YLS
Sbjct:  192 HRVLCNVAIRTKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHYVPPQFRVLWGNCVALWWNSYLS 353          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|567976430|gb|ETL26953.1| (hypothetical protein L916_19436 [Phytophthora parasitica])

HSP 1 Score: 143.665 bits (361), Expect = 2.553e-37
Identity = 76/166 (45.78%), Postives = 105/166 (63.25%), Query Frame = 0
Query:   59 RAYHHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            + Y   L T P+ TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F  V P +RVL+GN VALWW+ YLS
Sbjct:  207 QKYQLALQTNPLRTKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHCVPPQFRVLWGNCVALWWNSYLS 371          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|675210563|ref|XP_008914166.1| (hypothetical protein PPTG_24249 [Phytophthora parasitica INRA-310] >gi|568085591|gb|ETN00495.1| hypothetical protein PPTG_24249 [Phytophthora parasitica INRA-310])

HSP 1 Score: 140.198 bits (352), Expect = 4.254e-36
Identity = 74/163 (45.40%), Postives = 102/163 (62.58%), Query Frame = 0
Query:   62 HHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            H  L    + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F  V P +RVL+GN VALWW+ YLS
Sbjct:  192 HRVLCNVAIRTKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHCVPPQFRVLWGNCVALWWNSYLS 353          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|568035824|gb|ETM33451.1| (hypothetical protein L914_19315 [Phytophthora parasitica])

HSP 1 Score: 139.813 bits (351), Expect = 4.678e-36
Identity = 74/163 (45.40%), Postives = 102/163 (62.58%), Query Frame = 0
Query:   62 HHCLVTRPVLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            H  L    + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F  V P +RVL+GN VALWW+ YLS
Sbjct:  192 HRVLCNVAIRTKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHCVPPQFRVLWGNCVALWWNSYLS 353          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|570937760|gb|ETP03017.1| (hypothetical protein F441_19963 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 137.502 bits (345), Expect = 2.398e-35
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 0
Query:   70 VLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F  V P +RVL+GN VALWW+ YLS
Sbjct:  176 IETKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHCVPPQFRVLWGNCVALWWNSYLS 329          
BLAST of EWM30595.1 vs. NCBI_GenBank
Match: gi|566010313|gb|ETI33224.1| (hypothetical protein F443_20086 [Phytophthora parasitica P1569])

HSP 1 Score: 137.502 bits (345), Expect = 2.723e-35
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 0
Query:   70 VLTKALTSAVISALGDILAS--SGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLS 222
            + TKALTSA ++ LG++L      K  RG S R+ L FF FGG+VTGP+ H+WYG LE + R  +       K+LLD+LLFTPP +A T+F L ++    P A+   + +VY+  L  N +VWT+ Q ++F  V P +RVL+GN VALWW+ YLS
Sbjct:  176 IETKALTSAGVAMLGEVLGHVLKHKTLRGLSPRQMLAFFAFGGVVTGPVLHFWYGYLETQ-RVAKKKLTPNRKLLLDRLLFTPPMVAFTIFSLGIMRGSSPKASRENLSRVYWNALLMNWKVWTLTQWLSFHCVPPQFRVLWGNCVALWWNSYLS 329          
The following BLAST results are available for this feature:
BLAST of EWM30595.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113262|gb|EWM30595.1|5.463e-175100.00peroxisomal membrane protein 2 [Nannochloropsis ga... [more]
gi|553181362|ref|XP_005853552.1|2.359e-169100.00integral membrane mpv17 pmp22, partial [Nannochlor... [more]
gi|695382429|ref|XP_009517398.1|5.520e-3846.43hypothetical protein PHYSODRAFT_323562 [Phytophtho... [more]
gi|570968075|gb|ETP31194.1|1.923e-3746.01hypothetical protein F442_19910 [Phytophthora para... [more]
gi|568005919|gb|ETL80196.1|2.093e-3746.01hypothetical protein L917_19279 [Phytophthora para... [more]
gi|567976430|gb|ETL26953.1|2.553e-3745.78hypothetical protein L916_19436 [Phytophthora para... [more]
gi|675210563|ref|XP_008914166.1|4.254e-3645.40hypothetical protein PPTG_24249 [Phytophthora para... [more]
gi|568035824|gb|ETM33451.1|4.678e-3645.40hypothetical protein L914_19315 [Phytophthora para... [more]
gi|570937760|gb|ETP03017.1|2.398e-3546.45hypothetical protein F441_19963 [Phytophthora para... [more]
gi|566010313|gb|ETI33224.1|2.723e-3546.45hypothetical protein F443_20086 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna96rna96Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications