EWM21082.1, cds9591 (CDS) Nannochloropsis gaditana

Overview
NameEWM21082.1
Unique Namecds9591
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:308475..309200 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21082.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100619g2.8509.mrna
GbkeyCDS
End range.
End range309200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:308475..309200 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0000387spliceosomal snRNP assembly
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR007022GEMIN2
Homology
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|585101135|gb|EWM21082.1| (hypothetical protein Naga_100619g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 476.478 bits (1225), Expect = 9.417e-170
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRERKIKVPPLREEGSWRIFFFGRTERGADPNGRGMKRKKPTRRSGEGGEDEEIGEGEANGEGKEGKGKQDKEDEYPGRGQQDEEPQSRPSATKQAEVSPPSLPPSLPSFLPPPPPPLPPGSSSLPPSL 242
            MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRERKIKVPPLREEGSWRIFFFGRTERGADPNGRGMKRKKPTRRSGEGGEDEEIGEGEANGEGKEGKGKQDKEDEYPGRGQQDEEPQSRPSATKQAEVSPPSLPPSLPSFLPPPPPPLPPGSSSLPPSL
Sbjct:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPVQPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRERKIKVPPLREEGSWRIFFFGRTERGADPNGRGMKRKKPTRRSGEGGEDEEIGEGEANGEGKEGKGKQDKEDEYPGRGQQDEEPQSRPSATKQAEVSPPSLPPSLPSFLPPPPPPLPPGSSSLPPSL 242
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|567949002|gb|ETK74738.1| (hypothetical protein L915_18516 [Phytophthora parasitica] >gi|567977668|gb|ETL28165.1| hypothetical protein L916_18416 [Phytophthora parasitica] >gi|570939010|gb|ETP04267.1| hypothetical protein F441_18900 [Phytophthora parasitica CJ01A1] >gi|570969293|gb|ETP32412.1| hypothetical protein F442_18870 [Phytophthora parasitica P10297])

HSP 1 Score: 77.0258 bits (188), Expect = 2.927e-13
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRER--------------KIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE A +P++V A  ++ R +D++QT+ MP +Q   L  T    TP ++W+  +L DF ++R+ + R    E +G  +              + KVP + +E  W  FFFG+  TE  A P
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAAGIPDVVVAPDVDPRQFDAQQTSNMPKLQTFGLEETDPKRTPDNKWKRDLLADFAELRQLIARW---EAIGAPKAETVRDGDTPIEILRTKVPRMSDEEGWIGFFFGKPGTELSATP 157
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|970636425|gb|KUF81005.1| (hypothetical protein AM588_10000779 [Phytophthora nicotianae] >gi|970657196|gb|KUF95112.1| hypothetical protein AM588_10010078 [Phytophthora nicotianae])

HSP 1 Score: 77.0258 bits (188), Expect = 3.173e-13
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRER--------------KIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE A +P++V A  ++ R +D++QT+ MP +Q   L  T    TP ++W+  +L DF ++R+ + R    E +G  +              + KVP + +E  W  FFFG+  TE  A P
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAAGIPDVVVAPDVDPRQFDAQQTSNMPKLQTFGLEETDPKRTPDNKWKRDLLADFAELRQLIARW---EAIGAPKAETVRDGDTPIEILRTKVPRMSDEEGWIGFFFGKPGTELSATP 157
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|695383758|ref|XP_009517805.1| (hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae] >gi|348690716|gb|EGZ30530.1| hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae])

HSP 1 Score: 75.485 bits (184), Expect = 1.252e-12
Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPVQPA--LPPTPAGLTPSHEWEEMILTDFEDVRENLQRLE-------EEEGVGRE----RKIKVPPLREEGSWRIFFFGR 137
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE   +P++V A  I+ R +D++QT+ MP   +  L  T     P  +W   +L DF ++R+ + R E       E    G       + KVP + +E  W  FFFG+
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAPDIDPRQFDAQQTSNMPTLQSFGLEETDPNRVPDDKWRRELLADFAELRQLIARWEAIGPPKAETLTAGNVPTEILRTKVPRMSDEDGWIAFFFGK 148
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|566011525|gb|ETI34436.1| (hypothetical protein F443_19090 [Phytophthora parasitica P1569] >gi|568037014|gb|ETM34612.1| hypothetical protein L914_18328 [Phytophthora parasitica])

HSP 1 Score: 75.485 bits (184), Expect = 1.299e-12
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRER--------------KIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE   +P++V A  ++ R +D++QT+ MP +Q   L  T    TP ++W+  +L DF ++R+ + R    E +G  +              + KVP + +E  W  FFFG+  TE  A P
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAPDVDPRQFDAQQTSNMPKLQTFGLEETDPKRTPDNKWKRDLLADFAELRQLIARW---EAIGAPKAETVRDGDTPIEILRTKVPRMSDEKGWIGFFFGKPGTELSATP 157
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|675176155|ref|XP_008896962.1| (hypothetical protein PPTG_05208 [Phytophthora parasitica INRA-310] >gi|568007162|gb|ETL81406.1| hypothetical protein L917_18244 [Phytophthora parasitica] >gi|568102724|gb|ETN17395.1| hypothetical protein PPTG_05208 [Phytophthora parasitica INRA-310] >gi|570315279|gb|ETO63227.1| hypothetical protein F444_19043 [Phytophthora parasitica P1976] >gi|970629962|gb|KUF77059.1| Gem-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 74.7146 bits (182), Expect = 2.146e-12
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRER--------------KIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE   +P++V A  ++ R +D++QT+ MP +Q   L  T    TP ++W+  +L DF ++R+ + R    E +G  +              + KVP + +E  W  FFFG+  TE  A P
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAPDVDPRQFDAQQTSNMPKLQTFGLEETDPKRTPDNKWKRDLLADFAELRQLIARW---EAIGAPKAETVRDGDTPIEILRTKVPRMSDEEGWIGFFFGKPGTELSATP 157
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|970656633|gb|KUF94619.1| (Gem-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 74.7146 bits (182), Expect = 2.446e-12
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLEEEEGVGRER--------------KIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+  +E  D  ++ I+ RM +G PP   +EYL RVRLE   +P++V A  ++ R +D++QT+ MP +Q   L  T    TP ++W+  +L DF ++R+ + R    E +G  +              + KVP + +E  W  FFFG+  TE  A P
Sbjct:    1 MMAAALPVEGEEAVD--VQLIRRRMQQGLPPQDVQEYLWRVRLEAEGIPDVVVAPDVDPRQFDAQQTSNMPKLQTFGLEETDPKRTPDNKWKRDLLADFAELRQLIARW---EAIGAPKAETVRDGDTPIEILRTKVPRMSDEEGWIGFFFGKPGTELSATP 157
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|325187413|emb|CCA21951.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.1738 bits (178), Expect = 8.641e-12
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 0 
Query:    2 MQQALPLGEDEQSDDY-IREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPVQPALPPT--PAGLTPSHEWEEMILTDFEDVRENLQRLE--EEEGVGRERKIKVPPLREEGSWRIFFFGR 137
            M   LP+ ED    +Y I+ ++ R+    PP   +EYL RV  E   +PE+V  + +N R YD RQT  +PV         P  L PS +W+  +L +F +VR+ ++R +    + +  E + +VP   +E  W  FF+GR
Sbjct:    1 MNAVLPIDEDGIDQEYFIKRMEDRL----PPADVQEYLWRVCFEAEEIPEVV-VSDVNPRDYDKRQTTCLPVLKDCCSVSDPTHL-PSEQWKSYLLAEFAEVRQLIKRWQAIRSQEINTEERAQVPRQSDEAGWMRFFYGR 135
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|635365492|emb|CCI46102.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 73.1738 bits (178), Expect = 1.029e-11
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = 0 
Query:    2 MQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMPV--QPALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLE----EEEGVGRERKIKVPPLREEGSWRIFFFGR 137
            M   LP+ ED     Y  +   RM    PP   +EYL RVR E   +P++V  + +N R YD RQT  +PV    ++   PA L PS EW+  +L +F ++R+ ++R +    EE  +  E   +VP   +E  W  FF+GR
Sbjct:    1 MNAVLPIDEDGIDKVYFLQ---RMKDKLPPADVQEYLWRVRHEVEEIPQVV-VSDVNPRDYDKRQTIRVPVLKDCSIVSDPAHL-PSEEWKSFVLAEFAELRQLIRRWQAIRSEESSI--EEHAQVPRQSDEAGWMRFFYGR 135
[Close]
BLAST of EWM21082.1 vs. NCBI_GenBank
Match: gi|1214706849|gb|OWZ18333.1| (hypothetical protein PHMEG_0007604 [Phytophthora megakarya])

HSP 1 Score: 72.4034 bits (176), Expect = 1.516e-11
Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = 0 
Query:    1 MMQQALPLGEDEQSDDYIREIQSRMARGEPPLSAEEYLLRVRLEFASLPEIVEATHINARTYDSRQTAYMP-VQP-ALPPTPAGLTPSHEWEEMILTDFEDVRENLQRLE-----EEEGVGR------ERKIKVPPLREEGSWRIFFFGR--TERGADP 144
            MM  ALP+ E E + D ++ I+ RM +G PP   +EYL RVR+E   +P++V A  +N R +D+RQT+ MP +Q   L  T     P+ +W+  +L DF ++R+ + R E     + E V          + KVP + +E  W  F FG+  TE  A P
Sbjct:    1 MMAAALPV-EGEGAVD-VQLIRHRMQQGLPPQDVQEYLWRVRIEAEGIPDVVVAPDVNPRQFDARQTSNMPKLQTFGLEETDPERIPNEKWKRELLADFAELRQLITRWEAIGPPKAETVNNGDIPQEILRTKVPRMSDEEGWIAFCFGKPGTEMSATP 157
The following BLAST results are available for this feature:
BLAST of EWM21082.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101135|gb|EWM21082.1|9.417e-170100.00hypothetical protein Naga_100619g2, partial [Nanno... [more]
gi|567949002|gb|ETK74738.1|2.927e-1335.19hypothetical protein L915_18516 [Phytophthora para... [more]
gi|970636425|gb|KUF81005.1|3.173e-1335.19hypothetical protein AM588_10000779 [Phytophthora ... [more]
gi|695383758|ref|XP_009517805.1|1.252e-1234.67hypothetical protein PHYSODRAFT_323895 [Phytophtho... [more]
gi|566011525|gb|ETI34436.1|1.299e-1234.57hypothetical protein F443_19090 [Phytophthora para... [more]
gi|675176155|ref|XP_008896962.1|2.146e-1234.57hypothetical protein PPTG_05208 [Phytophthora para... [more]
gi|970656633|gb|KUF94619.1|2.446e-1234.57Gem-associated protein 2 [Phytophthora nicotianae][more]
gi|325187413|emb|CCA21951.1|8.641e-1233.33conserved hypothetical protein [Albugo laibachii N... [more]
gi|635365492|emb|CCI46102.1|1.029e-1135.21unnamed protein product [Albugo candida][more]
gi|1214706849|gb|OWZ18333.1|1.516e-1135.85hypothetical protein PHMEG_0007604 [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9622rna9622Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications