EWM29714.1, cds957 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|585112292|gb|EWM29714.1| (small gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 Query: 1 MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC Sbjct: 1 MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|298707324|emb|CBJ25951.1| (Rab6, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 352.443 bits (903), Expect = 8.025e-120 Identity = 170/210 (80.95%), Postives = 186/210 (88.57%), Query Frame = 0 Query: 108 SLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 ++PQI LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVRNERGNDV++MLVGNKTDL +RRQVS EEGED+AK + IMFIETSAK G+NIK LFRKLATALPGME+A T +ANLIDIKL+AAP + D CAC Sbjct: 12 AVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPATSNNANLIDIKLSAAPPTE----DAARTCAC 217
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|675187755|ref|XP_008902762.1| (hypothetical protein PPTG_09511 [Phytophthora parasitica INRA-310] >gi|566028353|gb|ETI51264.1| hypothetical protein F443_05331 [Phytophthora parasitica P1569] >gi|567965690|gb|ETK91160.1| hypothetical protein L915_05192 [Phytophthora parasitica] >gi|567994401|gb|ETL44560.1| hypothetical protein L916_05148 [Phytophthora parasitica] >gi|568054086|gb|ETM50890.1| hypothetical protein L914_05147 [Phytophthora parasitica] >gi|568097086|gb|ETN11830.1| hypothetical protein PPTG_09511 [Phytophthora parasitica INRA-310] >gi|570332070|gb|ETO80018.1| hypothetical protein F444_05377 [Phytophthora parasitica P1976] >gi|570955965|gb|ETP21029.1| hypothetical protein F441_05338 [Phytophthora parasitica CJ01A1] >gi|570991132|gb|ETP48978.1| hypothetical protein F442_05382 [Phytophthora parasitica P10297] >gi|970665302|gb|KUG01996.1| Ras-related protein RABH1e [Phytophthora nicotianae]) HSP 1 Score: 352.058 bits (902), Expect = 2.406e-119 Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 0 Query: 107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 ++PQI LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+ G +NLIDIKL AAP + +T +C C Sbjct: 36 VNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 242
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|325188888|emb|CCA23418.1| (Rab6 family GTPase putative [Albugo laibachii Nc14]) HSP 1 Score: 351.288 bits (900), Expect = 6.740e-119 Identity = 168/217 (77.42%), Postives = 189/217 (87.10%), Query Frame = 0 Query: 100 VKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 V TS ++PQI L+KYK+VFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNT KW++DVR ERG DV+IMLVGNKTD+SDRRQV+ EEG +KA Q+N++FIE+SAKAG+NIKPLFRKLA LPGME+A G ANLIDIKL AAPA ++A T S CAC Sbjct: 35 VTMDTSTVNVPQITPLSKYKIVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTIKWIEDVRTERGQDVVIMLVGNKTDISDRRQVTVEEGTEKATQENVLFIESSAKAGYNIKPLFRKLAVMLPGMENATNNGDANLIDIKLTAAPA--PKEATTNS-CAC 248
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|953490737|emb|CEG46391.1| (rab family gtpase [Plasmopara halstedii]) HSP 1 Score: 350.132 bits (897), Expect = 1.299e-118 Identity = 165/214 (77.10%), Postives = 185/214 (86.45%), Query Frame = 0 Query: 103 PTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 P + ++PQI LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV++MLVGNKTD+SDRRQVS EEG DKAK++N+M+IETSAKAG+NIK LFRKLAT LPGME+ G +NLIDIKL AAP A+ +C C Sbjct: 33 PDTDVNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVVMLVGNKTDISDRRQVSIEEGSDKAKEENVMYIETSAKAGYNIKALFRKLATVLPGMENTMITGDSNLIDIKLTAAPPPKEHTAE---QCNC 243
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|568023679|gb|ETL97732.1| (hypothetical protein L917_05031 [Phytophthora parasitica]) HSP 1 Score: 350.903 bits (899), Expect = 1.373e-118 Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 0 Query: 107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 ++PQI LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+ G +NLIDIKL AAP + +T +C C Sbjct: 58 VNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 264
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|695445620|ref|XP_009534275.1| (hypothetical protein PHYSODRAFT_254677, partial [Phytophthora sojae] >gi|348669592|gb|EGZ09414.1| hypothetical protein PHYSODRAFT_254677, partial [Phytophthora sojae]) HSP 1 Score: 344.354 bits (882), Expect = 6.836e-117 Identity = 164/205 (80.00%), Postives = 180/205 (87.80%), Query Frame = 0 Query: 112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 I LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+ G +NLIDIKL AAP + +T +C C Sbjct: 1 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 202
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|1173933091|gb|OQR84963.1| (Rab6 family GTPase [Achlya hypogyna]) HSP 1 Score: 343.199 bits (879), Expect = 3.324e-116 Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0 Query: 112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 I LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD++DRRQVS EEG DKAK++N+MFIETSAKAG NIK LFRKLAT LPGME+ G +NLIDIKL+AAPA A+T C C Sbjct: 12 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDIADRRQVSIEEGADKAKEENVMFIETSAKAGHNIKALFRKLATVLPGMETTPAAAGDSNLIDIKLSAAPAPKETTAET---CGC 214
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|1173951434|gb|OQR99316.1| (Rab6 family GTPase [Thraustotheca clavata]) HSP 1 Score: 342.428 bits (877), Expect = 6.039e-116 Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0 Query: 112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 I LAKYKLVFLGDQGVGKTS+ITRFMYDTF+ YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD++DRRQVS EEG DK+K++N+MFIETSAKAG NIK LFRKLAT LPGME+ G ANLIDIKL+AAPA A+T C C Sbjct: 10 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDIADRRQVSIEEGSDKSKEENVMFIETSAKAGHNIKALFRKLATVLPGMENTPAATGDANLIDIKLSAAPAPKESTAET---CGC 212
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|873240755|emb|CEL93115.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 342.428 bits (877), Expect = 6.226e-116 Identity = 162/210 (77.14%), Postives = 183/210 (87.14%), Query Frame = 0 Query: 107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316 A + L KYKLVFLG+Q VGKTSIITRFMYDTF+ NYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS AVVVYDITNRASFLNT+KW++DVR ERG+DVII LVGNKTDL+DRRQVS EEGE KAK++ IMFIETSAKAGFNIK LFRKLA+ALPG+E+ QT G + ++DI+L AAP + E+A+ +CAC Sbjct: 5 AGRGNVSGLNKYKLVFLGEQAVGKTSIITRFMYDTFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKWIEDVRAERGSDVIIALVGNKTDLADRRQVSVEEGEQKAKENEIMFIETSAKAGFNIKALFRKLASALPGLENQQTTGDSQMVDIQLNAAPQDTKEKAN---KCAC 211 The following BLAST results are available for this feature:
BLAST of EWM29714.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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