EWM29714.1, cds957 (CDS) Nannochloropsis gaditana

Overview
NameEWM29714.1
Unique Namecds957
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:832067..832086 -
Alignment locationCM002456.1:831512..831696 -
Alignment locationCM002456.1:831233..831388 -
Alignment locationCM002456.1:831084..831163 -
Alignment locationCM002456.1:830870..830958 -
Alignment locationCM002456.1:830692..830762 -
Alignment locationCM002456.1:830432..830543 -
Alignment locationCM002456.1:830213..830285 -
Alignment locationCM002456.1:829905..830069 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29714.1
Productsmall gtp-binding protein
Orig transcript idgnl|cribi|Naga_100124g5.8335.mrna
GeneRab6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:832067..832086 -
CM002456.1supercontigCM002456.1:831512..831696 -
CM002456.1supercontigCM002456.1:831233..831388 -
CM002456.1supercontigCM002456.1:831084..831163 -
CM002456.1supercontigCM002456.1:830870..830958 -
CM002456.1supercontigCM002456.1:830692..830762 -
CM002456.1supercontigCM002456.1:830432..830543 -
CM002456.1supercontigCM002456.1:830213..830285 -
CM002456.1supercontigCM002456.1:829905..830069 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR020849Small_GTPase_Ras
IPR003578Small_GTPase_Rho
IPR002041Ran_GTPase
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|585112292|gb|EWM29714.1| (small gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC
Sbjct:    1 MDMVNASKPGRARALACRRRERRNRAPRKGTTQYYHLQTVQTTPTRTETFVVIMHSQHWDSFLSEACSHLLTCGRQTAKFSWSGPSFSSKALRMAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|298707324|emb|CBJ25951.1| (Rab6, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 352.443 bits (903), Expect = 8.025e-120
Identity = 170/210 (80.95%), Postives = 186/210 (88.57%), Query Frame = 0
Query:  108 SLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            ++PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVRNERGNDV++MLVGNKTDL +RRQVS EEGED+AK + IMFIETSAK G+NIK LFRKLATALPGME+A  T  +ANLIDIKL+AAP +     D    CAC
Sbjct:   12 AVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPATSNNANLIDIKLSAAPPTE----DAARTCAC 217          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|675187755|ref|XP_008902762.1| (hypothetical protein PPTG_09511 [Phytophthora parasitica INRA-310] >gi|566028353|gb|ETI51264.1| hypothetical protein F443_05331 [Phytophthora parasitica P1569] >gi|567965690|gb|ETK91160.1| hypothetical protein L915_05192 [Phytophthora parasitica] >gi|567994401|gb|ETL44560.1| hypothetical protein L916_05148 [Phytophthora parasitica] >gi|568054086|gb|ETM50890.1| hypothetical protein L914_05147 [Phytophthora parasitica] >gi|568097086|gb|ETN11830.1| hypothetical protein PPTG_09511 [Phytophthora parasitica INRA-310] >gi|570332070|gb|ETO80018.1| hypothetical protein F444_05377 [Phytophthora parasitica P1976] >gi|570955965|gb|ETP21029.1| hypothetical protein F441_05338 [Phytophthora parasitica CJ01A1] >gi|570991132|gb|ETP48978.1| hypothetical protein F442_05382 [Phytophthora parasitica P10297] >gi|970665302|gb|KUG01996.1| Ras-related protein RABH1e [Phytophthora nicotianae])

HSP 1 Score: 352.058 bits (902), Expect = 2.406e-119
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 0
Query:  107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
             ++PQI  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+    G +NLIDIKL AAP     + +T  +C C
Sbjct:   36 VNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 242          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|325188888|emb|CCA23418.1| (Rab6 family GTPase putative [Albugo laibachii Nc14])

HSP 1 Score: 351.288 bits (900), Expect = 6.740e-119
Identity = 168/217 (77.42%), Postives = 189/217 (87.10%), Query Frame = 0
Query:  100 VKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            V   TS  ++PQI  L+KYK+VFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNT KW++DVR ERG DV+IMLVGNKTD+SDRRQV+ EEG +KA Q+N++FIE+SAKAG+NIKPLFRKLA  LPGME+A   G ANLIDIKL AAPA   ++A T S CAC
Sbjct:   35 VTMDTSTVNVPQITPLSKYKIVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTIKWIEDVRTERGQDVVIMLVGNKTDISDRRQVTVEEGTEKATQENVLFIESSAKAGYNIKPLFRKLAVMLPGMENATNNGDANLIDIKLTAAPA--PKEATTNS-CAC 248          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|953490737|emb|CEG46391.1| (rab family gtpase [Plasmopara halstedii])

HSP 1 Score: 350.132 bits (897), Expect = 1.299e-118
Identity = 165/214 (77.10%), Postives = 185/214 (86.45%), Query Frame = 0
Query:  103 PTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            P +  ++PQI  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV++MLVGNKTD+SDRRQVS EEG DKAK++N+M+IETSAKAG+NIK LFRKLAT LPGME+    G +NLIDIKL AAP      A+   +C C
Sbjct:   33 PDTDVNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVVMLVGNKTDISDRRQVSIEEGSDKAKEENVMYIETSAKAGYNIKALFRKLATVLPGMENTMITGDSNLIDIKLTAAPPPKEHTAE---QCNC 243          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|568023679|gb|ETL97732.1| (hypothetical protein L917_05031 [Phytophthora parasitica])

HSP 1 Score: 350.903 bits (899), Expect = 1.373e-118
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 0
Query:  107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
             ++PQI  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+    G +NLIDIKL AAP     + +T  +C C
Sbjct:   58 VNVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 264          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|695445620|ref|XP_009534275.1| (hypothetical protein PHYSODRAFT_254677, partial [Phytophthora sojae] >gi|348669592|gb|EGZ09414.1| hypothetical protein PHYSODRAFT_254677, partial [Phytophthora sojae])

HSP 1 Score: 344.354 bits (882), Expect = 6.836e-117
Identity = 164/205 (80.00%), Postives = 180/205 (87.80%), Query Frame = 0
Query:  112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            I  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD+SDRRQVS EEG DKAK++N+MFIETSAKAG+NIK LFRKLAT LPGME+    G +NLIDIKL AAP     + +T  +C C
Sbjct:    1 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKLTAAPPP---KENTAEQCNC 202          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|1173933091|gb|OQR84963.1| (Rab6 family GTPase [Achlya hypogyna])

HSP 1 Score: 343.199 bits (879), Expect = 3.324e-116
Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0
Query:  112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            I  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD++DRRQVS EEG DKAK++N+MFIETSAKAG NIK LFRKLAT LPGME+     G +NLIDIKL+AAPA     A+T   C C
Sbjct:   12 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDIADRRQVSIEEGADKAKEENVMFIETSAKAGHNIKALFRKLATVLPGMETTPAAAGDSNLIDIKLSAAPAPKETTAET---CGC 214          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|1173951434|gb|OQR99316.1| (Rab6 family GTPase [Thraustotheca clavata])

HSP 1 Score: 342.428 bits (877), Expect = 6.039e-116
Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0
Query:  112 IPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESA-QTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            I  LAKYKLVFLGDQGVGKTS+ITRFMYDTF+  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKW++DVR ERG DV+IMLVGNKTD++DRRQVS EEG DK+K++N+MFIETSAKAG NIK LFRKLAT LPGME+     G ANLIDIKL+AAPA     A+T   C C
Sbjct:   10 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDIADRRQVSIEEGSDKSKEENVMFIETSAKAGHNIKALFRKLATVLPGMENTPAATGDANLIDIKLSAAPAPKESTAET---CGC 212          
BLAST of EWM29714.1 vs. NCBI_GenBank
Match: gi|873240755|emb|CEL93115.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 342.428 bits (877), Expect = 6.226e-116
Identity = 162/210 (77.14%), Postives = 183/210 (87.14%), Query Frame = 0
Query:  107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316
            A    +  L KYKLVFLG+Q VGKTSIITRFMYDTF+ NYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS AVVVYDITNRASFLNT+KW++DVR ERG+DVII LVGNKTDL+DRRQVS EEGE KAK++ IMFIETSAKAGFNIK LFRKLA+ALPG+E+ QT G + ++DI+L AAP  + E+A+   +CAC
Sbjct:    5 AGRGNVSGLNKYKLVFLGEQAVGKTSIITRFMYDTFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKWIEDVRAERGSDVIIALVGNKTDLADRRQVSVEEGEQKAKENEIMFIETSAKAGFNIKALFRKLASALPGLENQQTTGDSQMVDIQLNAAPQDTKEKAN---KCAC 211          
The following BLAST results are available for this feature:
BLAST of EWM29714.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112292|gb|EWM29714.1|0.000e+0100.00small gtp-binding protein [Nannochloropsis gaditan... [more]
gi|298707324|emb|CBJ25951.1|8.025e-12080.95Rab6, RAB family GTPase [Ectocarpus siliculosus][more]
gi|675187755|ref|XP_008902762.1|2.406e-11979.05hypothetical protein PPTG_09511 [Phytophthora para... [more]
gi|325188888|emb|CCA23418.1|6.740e-11977.42Rab6 family GTPase putative [Albugo laibachii Nc14... [more]
gi|953490737|emb|CEG46391.1|1.299e-11877.10rab family gtpase [Plasmopara halstedii][more]
gi|568023679|gb|ETL97732.1|1.373e-11879.05hypothetical protein L917_05031 [Phytophthora para... [more]
gi|695445620|ref|XP_009534275.1|6.836e-11780.00hypothetical protein PHYSODRAFT_254677, partial [P... [more]
gi|1173933091|gb|OQR84963.1|3.324e-11680.58Rab6 family GTPase [Achlya hypogyna][more]
gi|1173951434|gb|OQR99316.1|6.039e-11680.58Rab6 family GTPase [Thraustotheca clavata][more]
gi|873240755|emb|CEL93115.1|6.226e-11677.14unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna957rna957Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications