EWM21142.1, cds9551 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|585101209|gb|EWM21142.1| (myb-like dna-binding domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1907.88 bits (4941), Expect = 0.000e+0 Identity = 922/922 (100.00%), Postives = 922/922 (100.00%), Query Frame = 0 Query: 1 MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE 922 MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE Sbjct: 1 MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE 922
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|676395705|ref|XP_009041130.1| (hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens] >gi|323448243|gb|EGB04144.1| hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens]) HSP 1 Score: 203.756 bits (517), Expect = 1.196e-57 Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREV 206 DRRVWS+ ED +I++LV +GTRSWSVIAE I SD +I GRTGKQCRERWHNHLDP+INK+AWT +EER+M++AH+ LGNKWSEIAK LPGRTDNHVKNHWYSFMRRNVRRLNREV Sbjct: 5 DRRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSD--YNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREV 120
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|676395787|ref|XP_009041171.1| (hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens] >gi|323448285|gb|EGB04186.1| hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens]) HSP 1 Score: 203.756 bits (517), Expect = 1.125e-56 Identity = 94/119 (78.99%), Postives = 103/119 (86.55%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELG-NKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREV 206 DRRVW+ ED++IR LV +GTRSWSVIAE I D +I GRTGKQCRERWHNHLDP+INK AWTEEEERIM++AH+ LG NKWSEIAK LPGRTDNHVKNHWYSFMRRNVRRLNREV Sbjct: 6 DRRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQD--FNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREV 122
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|298712658|emb|CBJ48683.1| (Myb-like DNA-binding domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 181.415 bits (459), Expect = 7.088e-46 Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVA 207 +RRVWS++EDD+IR LV HGTRSW+ I E +A+D SI GR+GKQCRERWHNHLDP+I K WT EEE ++++ E+GN+WSEIAKRLPGRTDN VKN WYS MRRNVR L+REV+ Sbjct: 16 NRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAAD--YSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 132
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471221067|ref|XP_004027480.1| (myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis] >gi|340501339|gb|EGR28135.1| myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis]) HSP 1 Score: 169.859 bits (429), Expect = 3.875e-44 Identity = 69/117 (58.97%), Postives = 96/117 (82.05%), Query Frame = 0 Query: 88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204 +DRR WS +ED I+ LVA +G + W++IA+K+ ++ S+ GR+GKQCRERWHNHLDP INK W+E+EE+I+ EAH++ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+ Sbjct: 2 TDRRAWSDNEDQVIKELVALYGIKKWTIIAQKM--EEIYSLKGRSGKQCRERWHNHLDPGINKLPWSEKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSTLRRSLRRINK 116
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471225945|ref|XP_004032027.1| (myb protein, putative, partial [Ichthyophthirius multifiliis] >gi|340503939|gb|EGR30440.1| myb protein, putative, partial [Ichthyophthirius multifiliis]) HSP 1 Score: 165.622 bits (418), Expect = 1.642e-43 Identity = 69/117 (58.97%), Postives = 93/117 (79.49%), Query Frame = 0 Query: 88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204 +DRR W ED I+ LVA +G + W+VIA+K+ ++ S+ GR+GKQCRERWHNHLDP INK WT +EE+I+ EAH++ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+ Sbjct: 2 TDRRSWDNQEDKVIKELVALYGVKKWTVIAQKM--EQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSKLRRSLRRINK 116
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471223026|ref|XP_004030301.1| (myb-like DNA-binding domain protein [Ichthyophthirius multifiliis] >gi|340502370|gb|EGR29065.1| myb-like DNA-binding domain protein [Ichthyophthirius multifiliis]) HSP 1 Score: 160.614 bits (405), Expect = 2.083e-41 Identity = 68/116 (58.62%), Postives = 93/116 (80.17%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204 DRR W+++ED +I+ LV+ G + WS+IA+K++ + +I+ RTGKQCRERWHNHLDP INK W +EE I+ +AH+E GNKWSEIAK LPGRTDN +KNH+YS +RR++RR+N+ Sbjct: 3 DRRSWAENEDYAIKELVSVFGVKKWSLIAQKMS--EQYNISNRTGKQCRERWHNHLDPQINKEQWAADEEMIIFKAHKEYGNKWSEIAKYLPGRTDNSIKNHFYSTLRRSLRRINK 116
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|954185939|gb|KRW98813.1| (Homeodomain protein [Pseudocohnilembus persalinus]) HSP 1 Score: 172.94 bits (437), Expect = 1.113e-40 Identity = 68/116 (58.62%), Postives = 93/116 (80.17%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204 DRR W+ +ED +I LV +G + W+++A+K+ D L R+GKQCRERWHNHLDP+INK+ WTEEEE+++ EAHR+ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+ Sbjct: 8 DRRAWTSEEDKAIIELVQKYGIKKWTIVAKKMQEDYNLK--DRSGKQCRERWHNHLDPSINKSEWTEEEEKVIFEAHRQFGNKWAEIAKLLPGRTDNSIKNHFYSTLRRSLRRINK 121
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|829190363|ref|XP_001027695.2| (Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210] >gi|586729536|gb|EAS07453.2| Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210]) HSP 1 Score: 172.94 bits (437), Expect = 1.326e-40 Identity = 68/120 (56.67%), Postives = 98/120 (81.67%), Query Frame = 0 Query: 89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAE 208 DRR WS DED +IR+LV G + W+++A+K+ ++ +++GR+GKQCRERWHNHLDP+INK WTEEEE+I+ E H++ GNKW+EIA+ LPGRTDN +KNH+YS +RR++RR+N+ + + Sbjct: 123 DRRAWSDDEDKAIRDLVNTFGIKKWTIVAQKM--EELYNLSGRSGKQCRERWHNHLDPHINKQPWTEEEEKIIFENHKKCGNKWAEIARHLPGRTDNSIKNHFYSTLRRSLRRINKLLGD 240
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|145487584|ref|XP_001429797.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124396891|emb|CAK62399.1| unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 160.999 bits (406), Expect = 1.001e-38 Identity = 67/127 (52.76%), Postives = 98/127 (77.17%), Query Frame = 0 Query: 88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLR 214 +DR+ W++ ED +I +LV +G + W+ +AEK+ + GR+GKQCRER+HNHLDP+INK+ W+E EE+I+ AHRE GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+ + + ++LR Sbjct: 2 TDRKAWNQKEDIAILHLVKQYGIKKWTTVAEKMKE--IYGLFGRSGKQCRERYHNHLDPSINKDPWSESEEKIIFLAHREHGNKWAEIAKLLPGRTDNAIKNHFYSTLRRSLRRINKMIGDKNSNLR 126 The following BLAST results are available for this feature:
BLAST of EWM21142.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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