EWM21142.1, cds9551 (CDS) Nannochloropsis gaditana

Overview
NameEWM21142.1
Unique Namecds9551
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:223807..224075 -
Alignment locationKK037254.1:223603..223706 -
Alignment locationKK037254.1:223341..223464 -
Alignment locationKK037254.1:220951..223222 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21142.1
Productmyb-like dna-binding domain containing protein
Orig transcript idgnl|cribi|Naga_100041g22.3712.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:223807..224075 -
KK037254.1supercontigKK037254.1:223603..223706 -
KK037254.1supercontigKK037254.1:223341..223464 -
KK037254.1supercontigKK037254.1:220951..223222 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|585101209|gb|EWM21142.1| (myb-like dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1907.88 bits (4941), Expect = 0.000e+0
Identity = 922/922 (100.00%), Postives = 922/922 (100.00%), Query Frame = 0
Query:    1 MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE 922
            MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE
Sbjct:    1 MDPQSMIASKVTDGQSQISSCQDVNENIISATTAGSMKMHSSAAGLRIGPSSFPFATSTPTLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETGGINLPTSAWASLRSQKATRRAVKLSEEHGTMIGLSAERPESKFNAQSLSPQSQVVDSLNPPSVDKLFGGRQGVGQQGKNSSPLVTAMDGRFSVPAAHYDPSTSYSQEGPNLYPSDSVINGVEMQTQDLILSPIPVGDLLTSFQQSQQQQKKRKHESSSCIEAGCVSACGGVSCAETEDEGSSGSKKQRKDMSFATGEKASRIDPESSHTIDFSATLAATESGDEGSTPQPMNSIGNPYGPEKMPDSKQEGLLATAAGPRDRMNNKSPSFAGATTQSIGFESPTLPFLSCDQRHHLTTLFDGFSTSVLDASAAGVFFQPSPTGAGIIGGSEYDFEVLQQLWAGSPKSGLLHPPLLPVGLHGSQPPQQGTEHSAPQQNHTSGMQVSDGAATAQNAHLFCGMTANTAMASSSYPSAMLAPPPPAGTVHRSSLYYPSHQNRQARLHAHESLRLDSDVTQTDDYVDSQDQHTSCNAWIVSE 922          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|676395705|ref|XP_009041130.1| (hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens] >gi|323448243|gb|EGB04144.1| hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens])

HSP 1 Score: 203.756 bits (517), Expect = 1.196e-57
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREV 206
            DRRVWS+ ED +I++LV  +GTRSWSVIAE I SD   +I GRTGKQCRERWHNHLDP+INK+AWT +EER+M++AH+ LGNKWSEIAK LPGRTDNHVKNHWYSFMRRNVRRLNREV
Sbjct:    5 DRRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSD--YNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREV 120          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|676395787|ref|XP_009041171.1| (hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens] >gi|323448285|gb|EGB04186.1| hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens])

HSP 1 Score: 203.756 bits (517), Expect = 1.125e-56
Identity = 94/119 (78.99%), Postives = 103/119 (86.55%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELG-NKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREV 206
            DRRVW+  ED++IR LV  +GTRSWSVIAE I  D   +I GRTGKQCRERWHNHLDP+INK AWTEEEERIM++AH+ LG NKWSEIAK LPGRTDNHVKNHWYSFMRRNVRRLNREV
Sbjct:    6 DRRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQD--FNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREV 122          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|298712658|emb|CBJ48683.1| (Myb-like DNA-binding domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 181.415 bits (459), Expect = 7.088e-46
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVA 207
            +RRVWS++EDD+IR LV  HGTRSW+ I E +A+D   SI GR+GKQCRERWHNHLDP+I K  WT EEE ++++   E+GN+WSEIAKRLPGRTDN VKN WYS MRRNVR L+REV+
Sbjct:   16 NRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAAD--YSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 132          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471221067|ref|XP_004027480.1| (myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis] >gi|340501339|gb|EGR28135.1| myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis])

HSP 1 Score: 169.859 bits (429), Expect = 3.875e-44
Identity = 69/117 (58.97%), Postives = 96/117 (82.05%), Query Frame = 0
Query:   88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204
            +DRR WS +ED  I+ LVA +G + W++IA+K+  ++  S+ GR+GKQCRERWHNHLDP INK  W+E+EE+I+ EAH++ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+
Sbjct:    2 TDRRAWSDNEDQVIKELVALYGIKKWTIIAQKM--EEIYSLKGRSGKQCRERWHNHLDPGINKLPWSEKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSTLRRSLRRINK 116          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471225945|ref|XP_004032027.1| (myb protein, putative, partial [Ichthyophthirius multifiliis] >gi|340503939|gb|EGR30440.1| myb protein, putative, partial [Ichthyophthirius multifiliis])

HSP 1 Score: 165.622 bits (418), Expect = 1.642e-43
Identity = 69/117 (58.97%), Postives = 93/117 (79.49%), Query Frame = 0
Query:   88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204
            +DRR W   ED  I+ LVA +G + W+VIA+K+  ++  S+ GR+GKQCRERWHNHLDP INK  WT +EE+I+ EAH++ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+
Sbjct:    2 TDRRSWDNQEDKVIKELVALYGVKKWTVIAQKM--EQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSKLRRSLRRINK 116          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|471223026|ref|XP_004030301.1| (myb-like DNA-binding domain protein [Ichthyophthirius multifiliis] >gi|340502370|gb|EGR29065.1| myb-like DNA-binding domain protein [Ichthyophthirius multifiliis])

HSP 1 Score: 160.614 bits (405), Expect = 2.083e-41
Identity = 68/116 (58.62%), Postives = 93/116 (80.17%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204
            DRR W+++ED +I+ LV+  G + WS+IA+K++  +  +I+ RTGKQCRERWHNHLDP INK  W  +EE I+ +AH+E GNKWSEIAK LPGRTDN +KNH+YS +RR++RR+N+
Sbjct:    3 DRRSWAENEDYAIKELVSVFGVKKWSLIAQKMS--EQYNISNRTGKQCRERWHNHLDPQINKEQWAADEEMIIFKAHKEYGNKWSEIAKYLPGRTDNSIKNHFYSTLRRSLRRINK 116          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|954185939|gb|KRW98813.1| (Homeodomain protein [Pseudocohnilembus persalinus])

HSP 1 Score: 172.94 bits (437), Expect = 1.113e-40
Identity = 68/116 (58.62%), Postives = 93/116 (80.17%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNR 204
            DRR W+ +ED +I  LV  +G + W+++A+K+  D  L    R+GKQCRERWHNHLDP+INK+ WTEEEE+++ EAHR+ GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+
Sbjct:    8 DRRAWTSEEDKAIIELVQKYGIKKWTIVAKKMQEDYNLK--DRSGKQCRERWHNHLDPSINKSEWTEEEEKVIFEAHRQFGNKWAEIAKLLPGRTDNSIKNHFYSTLRRSLRRINK 121          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|829190363|ref|XP_001027695.2| (Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210] >gi|586729536|gb|EAS07453.2| Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 172.94 bits (437), Expect = 1.326e-40
Identity = 68/120 (56.67%), Postives = 98/120 (81.67%), Query Frame = 0
Query:   89 DRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAE 208
            DRR WS DED +IR+LV   G + W+++A+K+  ++  +++GR+GKQCRERWHNHLDP+INK  WTEEEE+I+ E H++ GNKW+EIA+ LPGRTDN +KNH+YS +RR++RR+N+ + +
Sbjct:  123 DRRAWSDDEDKAIRDLVNTFGIKKWTIVAQKM--EELYNLSGRSGKQCRERWHNHLDPHINKQPWTEEEEKIIFENHKKCGNKWAEIARHLPGRTDNSIKNHFYSTLRRSLRRINKLLGD 240          
BLAST of EWM21142.1 vs. NCBI_GenBank
Match: gi|145487584|ref|XP_001429797.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124396891|emb|CAK62399.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 160.999 bits (406), Expect = 1.001e-38
Identity = 67/127 (52.76%), Postives = 98/127 (77.17%), Query Frame = 0
Query:   88 SDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVAELGTSLR 214
            +DR+ W++ ED +I +LV  +G + W+ +AEK+       + GR+GKQCRER+HNHLDP+INK+ W+E EE+I+  AHRE GNKW+EIAK LPGRTDN +KNH+YS +RR++RR+N+ + +  ++LR
Sbjct:    2 TDRKAWNQKEDIAILHLVKQYGIKKWTTVAEKMKE--IYGLFGRSGKQCRERYHNHLDPSINKDPWSESEEKIIFLAHREHGNKWAEIAKLLPGRTDNAIKNHFYSTLRRSLRRINKMIGDKNSNLR 126          
The following BLAST results are available for this feature:
BLAST of EWM21142.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101209|gb|EWM21142.1|0.000e+0100.00myb-like dna-binding domain containing protein [Na... [more]
gi|676395705|ref|XP_009041130.1|1.196e-5777.97hypothetical protein AURANDRAFT_39143 [Aureococcus... [more]
gi|676395787|ref|XP_009041171.1|1.125e-5678.99hypothetical protein AURANDRAFT_55303 [Aureococcus... [more]
gi|298712658|emb|CBJ48683.1|7.088e-4667.23Myb-like DNA-binding domain containing protein [Ec... [more]
gi|471221067|ref|XP_004027480.1|3.875e-4458.97myeloblastosis oncogene family protein, putative [... [more]
gi|471225945|ref|XP_004032027.1|1.642e-4358.97myb protein, putative, partial [Ichthyophthirius m... [more]
gi|471223026|ref|XP_004030301.1|2.083e-4158.62myb-like DNA-binding domain protein [Ichthyophthir... [more]
gi|954185939|gb|KRW98813.1|1.113e-4058.62Homeodomain protein [Pseudocohnilembus persalinus][more]
gi|829190363|ref|XP_001027695.2|1.326e-4056.67Myb-like DNA-binding domain protein [Tetrahymena t... [more]
gi|145487584|ref|XP_001429797.1|1.001e-3852.76hypothetical protein [Paramecium tetraurelia strai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9582rna9582Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications