EWM21161.1, cds9509 (CDS) Nannochloropsis gaditana

Overview
NameEWM21161.1
Unique Namecds9509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:122602..122717 -
Alignment locationKK037254.1:122237..122410 -
Alignment locationKK037254.1:121839..122034 -
Alignment locationKK037254.1:121308..121421 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21161.1
Productubiquitin-conjugating enzyme e2 j2 isoform 2
Orig transcript idgnl|cribi|Naga_100108g8.7746.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:122602..122717 -
KK037254.1supercontigKK037254.1:122237..122410 -
KK037254.1supercontigKK037254.1:121839..122034 -
KK037254.1supercontigKK037254.1:121308..121421 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|585101231|gb|EWM21161.1| (ubiquitin-conjugating enzyme e2 j2 isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 410.994 bits (1055), Expect = 2.782e-145
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MYTGLKVMATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVRVSGLGQPGKVSRVQMVEECRGRDLEKTEG 199
            MYTGLKVMATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVRVSGLGQPGKVSRVQMVEECRGRDLEKTEG
Sbjct:    1 MYTGLKVMATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVRVSGLGQPGKVSRVQMVEECRGRDLEKTEG 199          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|298715713|emb|CBJ28210.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 236.498 bits (602), Expect = 4.072e-75
Identity = 100/157 (63.69%), Postives = 132/157 (84.08%), Query Frame = 0
Query:    7 VMATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEI 163
             MA+ ++ +RLRKEL+A++R+P++NI A P+++NIL WHYV+ G KGSPYEGG+YHGKLKFPPEYP+KPPS+MM+TP+GRF  + RLCLSMSDFHPE+WNPMWSVSTILMGL +FMLD+A TLGS+ +S  QKK+ A  S+  N  +P F ++FP++
Sbjct:   20 TMASDMATRRLRKELMAIKRNPIDNIVATPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDL 176          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|675207859|ref|XP_008912814.1| (hypothetical protein PPTG_16980 [Phytophthora parasitica INRA-310] >gi|566012578|gb|ETI35489.1| hypothetical protein F443_18176 [Phytophthora parasitica P1569] >gi|567950018|gb|ETK75738.1| hypothetical protein L915_17695 [Phytophthora parasitica] >gi|567978693|gb|ETL29180.1| hypothetical protein L916_17583 [Phytophthora parasitica] >gi|568008173|gb|ETL82397.1| hypothetical protein L917_17428 [Phytophthora parasitica] >gi|568038090|gb|ETM35635.1| hypothetical protein L914_17488 [Phytophthora parasitica] >gi|568087035|gb|ETN01913.1| hypothetical protein PPTG_16980 [Phytophthora parasitica INRA-310] >gi|570316279|gb|ETO64227.1| hypothetical protein F444_18199 [Phytophthora parasitica P1976] >gi|570940065|gb|ETP05322.1| hypothetical protein F441_18041 [Phytophthora parasitica CJ01A1] >gi|570970331|gb|ETP33450.1| hypothetical protein F442_18016 [Phytophthora parasitica P10297] >gi|970634327|gb|KUF79616.1| Ubiquitin-conjugating enzyme E2 J2 [Phytophthora nicotianae])

HSP 1 Score: 233.032 bits (593), Expect = 1.342e-74
Identity = 103/163 (63.19%), Postives = 132/163 (80.98%), Query Frame = 0
Query:    8 MATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVR 170
            MA+ ++ KRLRKE +A+QR PV+ I A PLE+NIL WHYV+ G KG+PYEGG+YHGKLKFPPEYP+KPPS+MM+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+  QK+K A +S+  N T+  F ++FP++  ++  R
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAVASLETNCTNATFRKLFPDLVALQEER 163          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|695410359|ref|XP_009525163.1| (hypothetical protein PHYSODRAFT_491377 [Phytophthora sojae] >gi|348682630|gb|EGZ22446.1| hypothetical protein PHYSODRAFT_491377 [Phytophthora sojae])

HSP 1 Score: 230.72 bits (587), Expect = 8.893e-74
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 0
Query:   12 LSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVR 170
            ++ KRLRKE +A+QR PV+ I A P+ESNIL WHYV+ G KG+PYEGG+YHGKLKFPPEYP+KPPS+MM+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+  QK+K AA+S+  N T+  F ++FP++  ++  R
Sbjct:    1 MATKRLRKEYLAMQRKPVDYIQAVPVESNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLETNCTNATFRRLFPDLVALQEER 159          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|301109287|ref|XP_002903724.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|262096727|gb|EEY54779.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 230.335 bits (586), Expect = 1.289e-73
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 0
Query:   12 LSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVR 170
            ++ KRLRKE +A+QR PV+ I A PLE+NIL WHYV+ G KG+PYEGG+YHGKLKFPPEYP+KPPS+MM+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+  QK+K AA+S+  N T+  F ++FP++  ++  R
Sbjct:    1 MATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLESNCTNATFRKLFPDLVALQEER 159          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|635372266|emb|CCI39487.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 229.95 bits (585), Expect = 3.143e-73
Identity = 103/156 (66.03%), Postives = 127/156 (81.41%), Query Frame = 0
Query:    8 MATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEI 163
            MA+ L+ KRLRKE +A+QR  +ENI A PL SNIL WHYV+ G   S YEGG+YHG L+FPPEYP+KPPS++MLTP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML+S  TLGSI TS  QK++ AA+S+ FN +SP+F ++FP +
Sbjct:    1 MASFLATKRLRKEYMAIQRKSIENIVAAPLHSNILEWHYVIIGTNDSCYEGGFYHGILRFPPEYPMKPPSVLMLTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLESQSTLGSIVTSEAQKRRYAANSLEFNCSSPVFRKLFPNL 156          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|325183119|emb|CCA17577.1| (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 229.95 bits (585), Expect = 3.546e-73
Identity = 103/156 (66.03%), Postives = 128/156 (82.05%), Query Frame = 0
Query:    8 MATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEI 163
            MA+ L+ KRLRKE IA+QR  +ENI A PL SNIL WHYV+ G   S YEGGYYHG L+FPPEYP+KPPS++MLTP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI TS  QK++ AA+S+ +N +SP+F ++FP++
Sbjct:    1 MASFLATKRLRKEYIAIQRKSIENIVAAPLHSNILEWHYVIVGTSESCYEGGYYHGILRFPPEYPMKPPSVLMLTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQSTLGSIVTSEAQKRRYAAASLEYNCSSPVFRKLFPDL 156          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|1214698096|gb|OWZ11199.1| (Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 227.639 bits (579), Expect = 1.382e-72
Identity = 100/159 (62.89%), Postives = 130/159 (81.76%), Query Frame = 0
Query:   12 LSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVR 170
            ++ KRLRKE +++QR PVE I A P+E+NIL WHYV+ G KG+PYEGG+YHGKLKFPPEYP+KPPS+MM+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGSI T+  QK+K AA+S+  N ++  F ++FP++  ++  R
Sbjct:    1 MATKRLRKEYLSMQRKPVEYIQAVPVETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAAASLETNCSNATFRKLFPDLVTLQEER 159          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|953492125|emb|CEG45375.1| (ubiquitin-conjugating enzyme e2 [Plasmopara halstedii])

HSP 1 Score: 226.868 bits (577), Expect = 3.571e-72
Identity = 99/159 (62.26%), Postives = 130/159 (81.76%), Query Frame = 0
Query:   12 LSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEIRCMRLVR 170
            ++ KRLRKE +++QR PV+ I A PLE+NIL WHYV+ G KG+PYEGG+YHG+LKFPPEYP+KPPS+MM+TP+GRFK N RLCLSMSDFHPETWNPMWSVS+IL GL +FML++  TLGS+ T+ GQK+K AA+S+  N  +  F ++FP++  ++  R
Sbjct:    1 MATKRLRKEYLSMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGRLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSMSTTDGQKRKYAATSLETNCANATFRKLFPDLVALQAER 159          
BLAST of EWM21161.1 vs. NCBI_GenBank
Match: gi|676380067|ref|XP_009033312.1| (hypothetical protein AURANDRAFT_20698, partial [Aureococcus anophagefferens] >gi|323456375|gb|EGB12242.1| hypothetical protein AURANDRAFT_20698, partial [Aureococcus anophagefferens])

HSP 1 Score: 220.705 bits (561), Expect = 1.227e-70
Identity = 97/156 (62.18%), Postives = 125/156 (80.13%), Query Frame = 0
Query:    8 MATTLSAKRLRKELIALQRDPVENITARPLESNILVWHYVLKGAKGSPYEGGYYHGKLKFPPEYPLKPPSIMMLTPSGRFKPNTRLCLSMSDFHPETWNPMWSVSTILMGLQAFMLDSAPTLGSIETSLGQKKKLAASSMAFNLTSPLFVQMFPEI 163
            MA+ L+ +RL +E  A+++ P +NI ARPLESN+L WHYV+ G K S YEGG+YHGKLKFP EYPL+PPS++M TPSGRFK N RLCLSMSDFHPE+WNPMWSVSTIL GL +FML+S+PTLGS+E +  Q+++ AA S+ FN  +  F  +FP++
Sbjct:    1 MASDLATRRLLREFAAMRKAPPDNIVARPLESNVLEWHYVITGTKDSVYEGGHYHGKLKFPTEYPLRPPSVLMCTPSGRFKTNCRLCLSMSDFHPESWNPMWSVSTILTGLYSFMLESSPTLGSVEATPAQRRRFAAQSLEFNCANETFRGLFPDL 156          
The following BLAST results are available for this feature:
BLAST of EWM21161.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101231|gb|EWM21161.1|2.782e-145100.00ubiquitin-conjugating enzyme e2 j2 isoform 2 [Nann... [more]
gi|298715713|emb|CBJ28210.1|4.072e-7563.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|675207859|ref|XP_008912814.1|1.342e-7463.19hypothetical protein PPTG_16980 [Phytophthora para... [more]
gi|695410359|ref|XP_009525163.1|8.893e-7464.15hypothetical protein PHYSODRAFT_491377 [Phytophtho... [more]
gi|301109287|ref|XP_002903724.1|1.289e-7364.15ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|635372266|emb|CCI39487.1|3.143e-7366.03unnamed protein product [Albugo candida][more]
gi|325183119|emb|CCA17577.1|3.546e-7366.03ubiquitinconjugating enzyme E2 putative [Albugo la... [more]
gi|1214698096|gb|OWZ11199.1|1.382e-7262.89Ubiquitin-conjugating enzyme E2 [Phytophthora mega... [more]
gi|953492125|emb|CEG45375.1|3.571e-7262.26ubiquitin-conjugating enzyme e2 [Plasmopara halste... [more]
gi|676380067|ref|XP_009033312.1|1.227e-7062.18hypothetical protein AURANDRAFT_20698, partial [Au... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9540rna9540Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications