EWM21193.1, cds9481 (CDS) Nannochloropsis gaditana

Overview
NameEWM21193.1
Unique Namecds9481
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:30742..31114 +
Alignment locationKK037254.1:31200..31243 +
Alignment locationKK037254.1:31403..31702 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21193.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100474g4.5243.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:30742..31114 +
KK037254.1supercontigKK037254.1:31200..31243 +
KK037254.1supercontigKK037254.1:31403..31702 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21193.1 vs. NCBI_GenBank
Match: gi|585101277|gb|EWM21193.1| (hypothetical protein Naga_100474g4 [Nannochloropsis gaditana])

HSP 1 Score: 493.041 bits (1268), Expect = 1.961e-176
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA 238
            MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA
Sbjct:    1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA 238          
BLAST of EWM21193.1 vs. NCBI_GenBank
Match: gi|553188521|ref|XP_005854813.1| (hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526] >gi|422294249|gb|EKU21549.1| hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 424.476 bits (1090), Expect = 2.204e-149
Identity = 211/238 (88.66%), Postives = 211/238 (88.66%), Query Frame = 0
Query:    1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA 238
            MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKK                          ITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYM PFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA
Sbjct:    1 MKTAFFGLPAAALLFLGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKK--------------------------ITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMVPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVPTA 212          
BLAST of EWM21193.1 vs. NCBI_GenBank
Match: gi|585113117|gb|EWM30454.1| (hypothetical protein Naga_100100g12 [Nannochloropsis gaditana])

HSP 1 Score: 249.98 bits (637), Expect = 2.269e-80
Identity = 109/212 (51.42%), Postives = 155/212 (73.11%), Query Frame = 0
Query:   25 AFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVP 236
            AF+SS+V  +NDL   +++CK R  KNFLKCA+ +KG+++TWPDLSSC+S+LGDCRGW Y GVN   + G +  YL  AG+S+ A + GYYAYG+ DPKKY  FDCNYVS+LY+ VG C+LGQ+TV G++ F D+V +C+E +LS  ++AF+++QT F    P+  G + YFY+ P L + D ++ E+CP+LEG+ K  + +VR  KG A+P
Sbjct:   21 AFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIP 230          
BLAST of EWM21193.1 vs. NCBI_GenBank
Match: gi|585109819|gb|EWM27552.1| (hypothetical protein Naga_100015g58 [Nannochloropsis gaditana])

HSP 1 Score: 247.669 bits (631), Expect = 1.436e-79
Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 0
Query:   16 LGTMPQAFSAFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVV--GTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKK-GSPIVRASKGGA 234
            L  +P A SA   S+V   N L   ++VC  RQ K+FL CA+AEKG+AS WP LS C+  LG CRGWAYDG++   +T   E +LG+AG+SKNARYFGYYAYG+ DPKKYVPF+CNYVS+L++KVGRCILG++T    G++ F  +V +C+   L  AE +FVF+QT++    P+  G+V YFY++PFL L++    E+CP++EG+FKK GSP VR  K GA
Sbjct:   13 LVALPWATSA---SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFKKNGSPSVRILKAGA 231          
The following BLAST results are available for this feature:
BLAST of EWM21193.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101277|gb|EWM21193.1|1.961e-176100.00hypothetical protein Naga_100474g4 [Nannochloropsi... [more]
gi|553188521|ref|XP_005854813.1|2.204e-14988.66hypothetical protein NGA_0414800 [Nannochloropsis ... [more]
gi|585113117|gb|EWM30454.1|2.269e-8051.42hypothetical protein Naga_100100g12 [Nannochlorops... [more]
gi|585109819|gb|EWM27552.1|1.436e-7953.60hypothetical protein Naga_100015g58 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9512rna9512Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications