EWM21194.1, cds9480 (CDS) Nannochloropsis gaditana

Overview
NameEWM21194.1
Unique Namecds9480
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:28439..28535 -
Alignment locationKK037254.1:27374..28092 -
Alignment locationKK037254.1:27049..27160 -
Alignment locationKK037254.1:26334..26425 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21194.1
Productchaperone protein
Orig transcript idgnl|cribi|Naga_100474g3.5244.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:28439..28535 -
KK037254.1supercontigKK037254.1:27374..28092 -
KK037254.1supercontigKK037254.1:27049..27160 -
KK037254.1supercontigKK037254.1:26334..26425 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
IPR001623DnaJ_domain
Homology
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|585101278|gb|EWM21194.1| (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query:    1 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTIPADKKYRFVHTSHMYSAPALVSRKATKKHPCQHLRA 339
            MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTIPADKKYRFVHTSHMYSAPALVSRKATKKHPCQHLRA
Sbjct:    1 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTIPADKKYRFVHTSHMYSAPALVSRKATKKHPCQHLRA 339          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|553188524|ref|XP_005854814.1| (block of proliferation 1 [Nannochloropsis gaditana CCMP526] >gi|422294250|gb|EKU21550.1| block of proliferation 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 306.605 bits (784), Expect = 1.039e-90
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0
Query:    1 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELR 151
            MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPG GAGEREGGGINAHVLDELR
Sbjct:  438 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGHGAGEREGGGINAHVLDELR 588          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|755950444|ref|XP_011301422.1| (PREDICTED: dnaJ homolog subfamily C member 17 [Fopius arisanus])

HSP 1 Score: 85.5001 bits (210), Expect = 3.497e-15
Identity = 82/282 (29.08%), Postives = 133/282 (47.16%), Query Frame = 0
Query:   14 DWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEK-KHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEE----SFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAV 290
            D + ++ +S  +T+ ++K AY+K AL  HPDKN  +PKA + F  +++    L+DE  R    +  + +E A+E     R +++DA+RK+FK DLEARE K R A     PG  G+   +   E            E+ R+    ++A +R +EE ++  N      + +   EG           EG+ EG GK                           V+++W+    E+     +S E L +++ +YG +  V ++G KG  A V F+ERS AE AV
Sbjct:    8 DLYGLLEVSPSSTSSQIKTAYRKKALSCHPDKNPDNPKAGELFHQLSRVLEILTDESARSAYDKVLQSKEQAKE-----RAQKLDARRKKFKDDLEAREEKFRNAG---EPGKSGKSDEEKLKE------------EIERL----QKAGSRLVEEEVNFINEQIRQQLRKNRTEG----------REGQDEGSGK---------------------------VKIRWRVDNEEKLENGGYSREVLTRIMSKYGDVSGVVLSG-KGGRALVEFKERSAAEMAV 227          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|219110159|ref|XP_002176831.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411366|gb|EEC51294.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1149 bits (209), Expect = 3.883e-15
Identity = 88/305 (28.85%), Postives = 140/305 (45.90%), Query Frame = 0
Query:   10 EKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRG------DPKAADRFMLVTKAKSFLSDEG---KRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQ--RPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTI 303
            E  +D ++V+G+ ++A+  ++  AY+KLALK+HPDK R         K A  F  +  A+++L D      RR    K+   +AR+     R K M  +RKR + +L  R+ +E +AS++   RP    R   +             ++D+LR+ G   RE    R         AA EAA      E  +   +A          E +R+++E  E                  ++R+KW R +++ S S+ SL  LL +YG +++VEM G KGN+A V F E +     V A+     MR T 
Sbjct:    8 EPEKDPYDVLGIKFNASDADITRAYRKLALKFHPDKQRSTLSSAQQEKNAQDFQDIQIARAYLLDPEHAESRRNYDSKRASISARQAADAAREKGMSERRKRMRDEL--RQGEE-QASKQPTLRPKATSRSKSEN-----------EMVDKLRKQGAEMREEYGDR---------AATEAA-----KEHARNSSQAK---------EVRRKQKESRED----------------RQLRLKWSRRKIKISPSEHSLATLLSKYGMVESVEMLGSKGNSALVTFAETASCGPVVDAFAESEEMRATF 259          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|156552840|ref|XP_001599974.1| (PREDICTED: dnaJ homolog subfamily C member 17 [Nasonia vitripennis] >gi|645028755|ref|XP_008212160.1| PREDICTED: dnaJ homolog subfamily C member 17 [Nasonia vitripennis])

HSP 1 Score: 83.5741 bits (205), Expect = 1.857e-14
Identity = 80/289 (27.68%), Postives = 128/289 (44.29%), Query Frame = 0
Query:    7 EDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVR--VKWKRSQLEES---FSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAV 290
            +DD  + D +E++G +  +   E+K AY+K AL  HPDKN  +PKAA+ F+ ++KA   L+D   R    +  +   AR Q    R KE+DA+RK+FK DLEARE    EA +R +  G    P                     +  + + +AE  R++                             KEG    E E +R  +++ E L+      ST    +  E R  ++WK    + +   +  ++L++ L +YG I  + ++  K     V F+ R  AE AV
Sbjct:    2 DDDISKLDLYEIIGATITSDESEIKKAYRKKALSCHPDKNPDNPKAAELFLQLSKALEILTDAAARAAYDKVVN---ARAQAKL-RVKELDAKRKKFKDDLEARE----EAFKRSQTSGYTYSP---------------------KSDEEKLKAEIERLK-----------------------------KEGSKLVEEEKERLRQKILEDLRNG----STNNGYSEDECRCKIRWKVDADDTTNGGYDYDNLHRFLSKYGEISVLVISTTKKGRGLVEFKTREAAESAV 228          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|817200404|ref|XP_012275913.1| (PREDICTED: dnaJ homolog subfamily C member 17 [Orussus abietinus])

HSP 1 Score: 81.2629 bits (199), Expect = 8.722e-14
Identity = 81/285 (28.42%), Postives = 128/285 (44.91%), Query Frame = 0
Query:    8 DDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEES---FSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERA 289
            DD    D ++++G S  A+ +E+K AY+K AL  HPDKN  +PKA + F  +++A   L DE  R    +  H   AR Q    R +E+D++R++FK DLEARE    EA R  + GGG  G                  DE R       +AE  R++                             KEG  + E E     +++ E L G      T        +++KWK ++ +     ++ + L+++L +YG I A+ ++  K   A V ++E + AE A
Sbjct:    2 DDLMNLDLYQLIGASPTASVKEIKTAYRKKALTCHPDKNPDNPKAGELFHELSRALEILIDESARAAYDKVLH---ARCQAKL-RVRELDSKRRKFKEDLEARE----EAYRLSQQGGGYSGKS----------------DEDR------LKAEIERLQ-----------------------------KEGSKQVEEEVAFVRQKIFEQLHGHNKSAPT-----DCRIKLKWKVAKDDSENGGYNYDVLHRMLSKYGDIGALVISSNKNGRALVEYKEATAAEMA 222          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|299469751|emb|CBN76605.1| (Heat shock protein 40 like protein/ DnaJ domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 80.4925 bits (197), Expect = 4.770e-13
Identity = 88/275 (32.00%), Postives = 135/275 (49.09%), Query Frame = 0
Query:    9 DEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAR---EQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAEGGQGPGEAGKEGEGEGEGEGKREEREVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVF 280
            +E+  DW+ V+GL   A  ++V  A+KK++L +HPDKN G  +A  +FM + +AK FL D GK+R L ++K   AAR   E    +R + M  +++  + +LE RE +    S    P     G G G   R    + A  LDELR+ G+A+R+   R+  +   KS     A+  +R+A      G +G  G G    +   EER                       +RVKWK  +  ES SD +L  L  ++G +++V +   KG+ A VVF
Sbjct:    8 EEEATDWYVVLGLDVGAREKDVNKAFKKMSLVWHPDKNGGSEEAHAKFMKIKEAKLFLLD-GKKRGLYDQKR--AARRKTEALLAERNRTMGKRQRELRVELERREKEAASGSSFSSPSSRAGGLGAGGEAR----VAAARLDELRKKGEAERQ---RQSADWSVKSANIKSASARKRSAPSS---GLSGANGSGGDGDDDGLEER----------------------TLRVKWKTKK--ESHSDYTLDVLFSKFGVVQSVSIEEGKGDRAMVVF 245          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|1088273326|gb|OHB28735.1| (integrase [Desulfuromonadaceae bacterium GWC2_58_13])

HSP 1 Score: 77.7962 bits (190), Expect = 1.040e-12
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   13 EDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQ 91
            +D++ V+G+  DATA+E+K AY+KLALKYHPDKN GD KA D+F  +T+A + LSD  K+R+  +    EA   QR +Q
Sbjct:    3 KDYYAVLGVKKDATADEIKKAYRKLALKYHPDKNPGDKKAEDKFKELTEAYAVLSDPEKKRQYDQ--FGEAGFHQRFSQ 79          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|749569579|ref|WP_040199247.1| (J domain-containing protein [Geoalkalibacter subterraneus] >gi|749207656|gb|AJF05850.1| integrase [Geoalkalibacter subterraneus])

HSP 1 Score: 77.7962 bits (190), Expect = 1.332e-12
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 0
Query:   13 EDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGP 130
            +D++ V+GLS DA+ +++K AY+KLALKYHPDKN GD KA DRF  +T+A + LSD  K      KK  +   E    QR+ + D  R    GD+        E       GGGG  P
Sbjct:    3 KDYYGVLGLSKDASTDQIKKAYRKLALKYHPDKNPGDKKAEDRFKEITEAYAVLSDPEK------KKQYDQFGESDFHQRYSKEDIFRGFDVGDIFREFGFGTEDIFSHLFGGGGAHP 114          
BLAST of EWM21194.1 vs. NCBI_GenBank
Match: gi|646710739|gb|KDR16157.1| (DnaJ-like protein subfamily C member 17 [Zootermopsis nevadensis])

HSP 1 Score: 77.411 bits (189), Expect = 2.135e-12
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 0
Query:   14 DWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKR----RRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQR 122
            D +E++G+   AT +EVK AY+K AL  HPDKN  +PKAA+ F  ++KA   L+DE  R    R L+ KK    A + RH    +E+D++R++ K  LEARE +  E S++ R
Sbjct:   10 DLYELIGILSTATTQEVKKAYRKKALSCHPDKNPDNPKAAELFHQLSKALEILTDESARAAYDRVLNAKK----AAKLRH----RELDSKRQKLKEQLEARERQAEEFSKQNR 114          
The following BLAST results are available for this feature:
BLAST of EWM21194.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101278|gb|EWM21194.1|0.000e+0100.00chaperone protein [Nannochloropsis gaditana][more]
gi|553188524|ref|XP_005854814.1|1.039e-9099.34block of proliferation 1 [Nannochloropsis gaditana... [more]
gi|755950444|ref|XP_011301422.1|3.497e-1529.08PREDICTED: dnaJ homolog subfamily C member 17 [Fop... [more]
gi|219110159|ref|XP_002176831.1|3.883e-1528.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|156552840|ref|XP_001599974.1|1.857e-1427.68PREDICTED: dnaJ homolog subfamily C member 17 [Nas... [more]
gi|817200404|ref|XP_012275913.1|8.722e-1428.42PREDICTED: dnaJ homolog subfamily C member 17 [Oru... [more]
gi|299469751|emb|CBN76605.1|4.770e-1332.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
gi|1088273326|gb|OHB28735.1|1.040e-1250.63integrase [Desulfuromonadaceae bacterium GWC2_58_1... [more]
gi|749569579|ref|WP_040199247.1|1.332e-1241.53J domain-containing protein [Geoalkalibacter subte... [more]
gi|646710739|gb|KDR16157.1|2.135e-1242.48DnaJ-like protein subfamily C member 17 [Zootermop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9511rna9511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications