EWM21231.1, cds9442 (CDS) Nannochloropsis gaditana

Overview
NameEWM21231.1
Unique Namecds9442
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:370664..370892 -
Alignment locationKK037253.1:370342..370445 -
Alignment locationKK037253.1:370197..370268 -
Alignment locationKK037253.1:369914..369990 -
Alignment locationKK037253.1:369632..369688 -
Alignment locationKK037253.1:369375..369463 -
Alignment locationKK037253.1:369064..369111 -
Alignment locationKK037253.1:368755..368856 -
Alignment locationKK037253.1:368446..368500 -
Alignment locationKK037253.1:368184..368242 -
Alignment locationKK037253.1:368020..368062 -
Alignment locationKK037253.1:367948..367978 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21231.1
Productbeta-lactamase
Orig transcript idgnl|cribi|Naga_100589g1.930.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:370664..370892 -
KK037253.1supercontigKK037253.1:370342..370445 -
KK037253.1supercontigKK037253.1:370197..370268 -
KK037253.1supercontigKK037253.1:369914..369990 -
KK037253.1supercontigKK037253.1:369632..369688 -
KK037253.1supercontigKK037253.1:369375..369463 -
KK037253.1supercontigKK037253.1:369064..369111 -
KK037253.1supercontigKK037253.1:368755..368856 -
KK037253.1supercontigKK037253.1:368446..368500 -
KK037253.1supercontigKK037253.1:368184..368242 -
KK037253.1supercontigKK037253.1:368020..368062 -
KK037253.1supercontigKK037253.1:367948..367978 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001466Beta-lactam-related
IPR012338Beta-lactam/transpept-like
Homology
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|585101346|gb|EWM21231.1| (beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MARRNFLCLLHLLIPTIARAQGDLEGIWQGATTAAKAWLDSGNSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDGTIHRPPPDPHNIQLVDYTKRPKHDEIRTDAS 321
            MARRNFLCLLHLLIPTIARAQGDLEGIWQGATTAAKAWLDSGNSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDGTIHRPPPDPHNIQLVDYTKRPKHDEIRTDAS
Sbjct:    1 MARRNFLCLLHLLIPTIARAQGDLEGIWQGATTAAKAWLDSGNSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDGTIHRPPPDPHNIQLVDYTKRPKHDEIRTDAS 321          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|1147711501|gb|AQQ75272.1| (hypothetical protein, partial [uncultured bacterium])

HSP 1 Score: 198.749 bits (504), Expect = 5.171e-58
Identity = 115/272 (42.28%), Postives = 162/272 (59.56%), Query Frame = 0
Query:   31 ATTAAKAWLDSGNSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKV----YDPITGTNVAL-----ERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDGTIH 293
            A  +  A   S N LP   A +PE V M+S  L    + +   V + +I GA   + + G+I   +T+G A+VET +P+R DTI RI+S SKPI++ A + L +EG    NDPV+ Y+PEFA M+V     DP TG N+ L     +RPIT+  LL HT+GLTYG   +T VD+ Y K  IL+ D +LA  +  ++K+PL  +PG++W Y +S DVL  +  +++G   D+FLQ R+  PL M DTGFYVP     +LA +Y R   DG I 
Sbjct:   21 ARPSGAASGKSDNELP---AVAPEEVGMASSRLAHIRSVMNRHVAEKRIPGAIGLIARRGKIAYQETFGMADVETGKPMRIDTIHRIYSMSKPITSVAVMMLYEEGKFQLNDPVAKYLPEFAKMQVGIEEKDPQTG-NLTLKTAPAKRPITVRDLLRHTAGLTYGVFGDTLVDREYRKAKILS-DLNLAEFVTNLSKIPLLYEPGSRWHYSVSVDVLGRLVEVLSGKSFDQFLQERIFAPLDMRDTGFYVPADKKDRLAKLY-RPTRDGKIQ 286          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|1147711509|gb|AQQ75278.1| (hypothetical protein, partial [uncultured bacterium])

HSP 1 Score: 197.208 bits (500), Expect = 1.688e-57
Identity = 119/300 (39.67%), Postives = 170/300 (56.67%), Query Frame = 0
Query:    3 RRNFLCLLHLLIPTIARAQGDLEGIWQGATTAAKAWLDSGNSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKV----YDPITGTNVAL-----ERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDGTIH 293
            RR  + LL +L    A         +  A  +  A   S N LP   A +PE V M+S  L    + +   V + +I GA   + + G+I   +T+G A+VE  +P+R DTI RI+S SKPI++ A + L +EG    NDPV+ Y+PEFA M+V     DP TG N+ L     +RPIT+  LL HT+GLTYG   +T VD+ Y K  IL+ D +LA  +  ++K+PL  +PG++W Y +S DVL  +  +++G   D+FLQ R+  PL M DTGFYVP     +LA +Y R   DG + 
Sbjct:    2 RRLLISLLIVLFAMSA---------YPAARPSGAASGKSDNELP---AVAPEEVGMASSRLAHIRSVMNRHVAEKRIPGAIGLIARRGKIAYQETFGMADVEAGKPMRIDTIHRIYSMSKPITSVAVMMLYEEGKFQLNDPVAKYLPEFAKMQVGIEEKDPQTG-NLTLKTAPAKRPITVRDLLRHTAGLTYGVFGDTLVDREYRKAKILS-DLNLAEFVTNLSKIPLLYEPGSRWHYSVSVDVLGRLVEVLSGKSFDQFLQERIFAPLDMRDTGFYVPADKKDRLAKLY-RPTRDGKVQ 286          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|1120301449|ref|WP_073167123.1| (hypothetical protein [Tangfeifania diversioriginum] >gi|1110272850|emb|SHI85094.1| CubicO group peptidase, beta-lactamase class C family [Tangfeifania diversioriginum])

HSP 1 Score: 196.438 bits (498), Expect = 3.164e-56
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 0
Query:   63 LEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVY 283
            LE A  ++   ++  K+ G S  + KDGE V  + +G+A++E ++P+  +TIFRIFS +KPI+  A +TL DEG    +D VS YIPEFA  KVY+  T T    +  +TI HLLTHTSG+ YG+  N +VD LY  +     +  +  K+K +A LPL  QPGT W+YGLS DV   +  +++G+P DE+L+ ++ EPLGM DTGFY P     +L+ ++
Sbjct:   37 LELAGEKMQEYIDSGKLAGISALIYKDGETVYRENFGFADLEAQKPMEDNTIFRIFSMTKPITAVALMTLYDEGKFKLDDKVSTYIPEFAATKVYNSETKTLEPQQEEMTIRHLLTHTSGIPYGWDQNAYVDSLYRVSGAGGWEGTIGEKVKIMASLPLKHQPGTTWEYGLSIDVAGYLVEVLSGMPFDEYLKTQIFEPLGMDDTGFYAPKEKHDRLSALH 257          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|528059751|gb|EPX64533.1| (Beta-lactamase class C protein [Cystobacter fuscus DSM 2262])

HSP 1 Score: 193.741 bits (491), Expect = 4.353e-55
Identity = 100/250 (40.00%), Postives = 148/250 (59.20%), Query Frame = 0
Query:   43 NSLPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVY------DPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHV-DQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQR 285
            +S+ F V   P  V + +  L    T  +  V+D ++ G    V + G++  + ++G A+ E   P+R DT++RI+S +KP+++ A + L +EG    +DPVS ++PEFA  +VY       P+T   V    PI +WHLLTHT+GLTYGF   THV D+LY   +      DLAT+++  AKLPL  QPG +W Y ++TDVL     +V+G  +D F   R+L+PLGMTDT F+ P    H+LA +Y R
Sbjct:    4 SSMGFGVNVDPGEVGLDARRLRRIDTHFSRYVDDGRLAGWQVMVSRRGKVAHLTSHGLADKEAGVPVRTDTLWRIYSMTKPLTSVAAMMLWEEGAFELSDPVSRWLPEFAEPRVYTGGPAARPVT---VPATEPIRVWHLLTHTAGLTYGF-HRTHVTDELYRLQEADMGSADLATRVRGWAKLPLAFQPGAEWNYSVATDVLGRFVEVVSGQSLDTFFSERILKPLGMTDTAFWCPETQRHRLAALYTR 249          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|759716927|ref|WP_043428358.1| (serine hydrolase [Cystobacter fuscus])

HSP 1 Score: 191.815 bits (486), Expect = 2.053e-54
Identity = 99/248 (39.92%), Postives = 146/248 (58.87%), Query Frame = 0
Query:   45 LPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVY------DPITGTNVALERPITIWHLLTHTSGLTYGFMDNTHV-DQLYNKNDILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQR 285
            + F V   P  V + +  L    T  +  V+D ++ G    V + G++  + ++G A+ E   P+R DT++RI+S +KP+++ A + L +EG    +DPVS ++PEFA  +VY       P+T   V    PI +WHLLTHT+GLTYGF   THV D+LY   +      DLAT+++  AKLPL  QPG +W Y ++TDVL     +V+G  +D F   R+L+PLGMTDT F+ P    H+LA +Y R
Sbjct:    1 MGFGVNVDPGEVGLDARRLRRIDTHFSRYVDDGRLAGWQVMVSRRGKVAHLTSHGLADKEAGVPVRTDTLWRIYSMTKPLTSVAAMMLWEEGAFELSDPVSRWLPEFAEPRVYTGGPAARPVT---VPATEPIRVWHLLTHTAGLTYGF-HRTHVTDELYRLQEADMGSADLATRVRGWAKLPLAFQPGAEWNYSVATDVLGRFVEVVSGQSLDTFFSERILKPLGMTDTAFWCPETQRHRLAALYTR 244          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|219950521|gb|ACL60913.1| (beta-lactamase [Methylobacterium nodulans ORS 2060])

HSP 1 Score: 190.274 bits (482), Expect = 7.748e-54
Identity = 100/239 (41.84%), Postives = 147/239 (61.51%), Query Frame = 0
Query:   53 PESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITG------TNVALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKN--DILNPDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVY 283
            PE+V +S+  LE     +   VE  K+ G S +V + GE+V  + +G A++  E+P+  DTI R++S +KP+++ A + L +EG    +DPV+ ++PEF  M+V   +TG       +V  ER ITI  LLTHTSGLTYGFM++T VD +Y     D    +  LA  + R A LPL  QPG +W Y ++TDVL  + ++V+G+P DEFL+RR++ PLGM DT F+VP     + A  Y
Sbjct:    8 PEAVGLSAERLERIDPWMRRYVEAGKLAGLSVTVARRGEVVFSRAHGLADLARERPMADDTIVRVYSMTKPLTSVAVMMLYEEGRFQLDDPVTRFLPEFRDMRV---LTGGSRKKWESVPAERDITIRDLLTHTSGLTYGFMESTLVDAMYRDEGIDFQTAETSLADVVARAASLPLLSQPGAEWNYSIATDVLGHLVAVVSGVPFDEFLRRRIIHPLGMVDTDFHVPAEKLPRFASNY 243          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|1194598589|ref|WP_085933834.1| (serine hydrolase [Enhydrobacter aerosaccus] >gi|1152239870|emb|SJZ74418.1| CubicO group peptidase, beta-lactamase class C family [Enhydrobacter aerosaccus])

HSP 1 Score: 189.889 bits (481), Expect = 1.192e-53
Identity = 96/239 (40.17%), Postives = 143/239 (59.83%), Query Frame = 0
Query:   52 SPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTN---VALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILN---PDEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQ 284
            +PE V +S+  L      +   V+  ++ G    VM+ GE+   + YG A+VE  +P+R DTIFRI+S +KP+++ A + L +EG    +DP+S ++P F TM+V+   +      V  ER IT   LLTHTSGLTYGFM++T +D LY   D ++    D  LA  + ++A  PL CQPG  W Y +STDVL  +  +V+G P +++L  R+++PLGM DT F+VP     +LA  Y 
Sbjct:    8 APEQVGLSAARLARVSHWMKGWVDSGRLPGMVTCVMRKGELAFAEAYGKADVERGKPMRPDTIFRIYSMTKPLTSTAIMMLYEEGRFQLDDPISRFLPAFKTMRVFAGGSRGKIDTVPAEREITFRDLLTHTSGLTYGFMESTIIDALYRGKDGVDFQTADSSLAELVDKLATFPLLCQPGKAWNYSVSTDVLGRLVEVVSGEPFEKYLVERVIKPLGMVDTNFHVPKEKHERLAANYS 246          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|992051790|ref|WP_061027396.1| (serine hydrolase [Bradyrhizobium sp. CCH5-F6])

HSP 1 Score: 190.274 bits (482), Expect = 1.212e-53
Identity = 100/255 (39.22%), Postives = 154/255 (60.39%), Query Frame = 0
Query:   48 PVAFSPESVEMSSVHLEEAHTRIAS-LVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKVYDPITGTNVAL-----ERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNPDED--LATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVYQRNMTDG-TIH 293
            P   SPESV MS   L+     + +  ++  +  G    V + G+IV    +G+A++E + P++ DTI+RI+S +KP+++ AF+ L++EGLV+ ++PV+ YIPE+  + V+  + GT  A       RP+ I  LL HTSGLTYGF   ++VD  Y    I   ++   L T I+ +AK+PL   PG  W Y +STDV+  +   ++G+P ++FL++R+LEPLGMTDT F+VP   AH+ A  Y  +   G T H
Sbjct:    4 PTPASPESVGMSKAALDRVDAHLKNRYIDAGRFPGTQLLVYRRGKIVHNSVHGFADIERKVPVKDDTIYRIYSMTKPLTSVAFMMLVEEGLVAIDEPVAKYIPEWKDLGVF--VAGTYPAFLTRPPSRPMLIVDLLRHTSGLTYGFQQRSNVDAAYRSEKIGEVEKSGTLQTMIEGLAKIPLEFSPGESWNYSVSTDVIGYLVGKISGMPFEQFLKQRILEPLGMTDTDFHVPASKAHRFAACYSADPGGGMTFH 256          
BLAST of EWM21231.1 vs. NCBI_GenBank
Match: gi|472338620|dbj|BAN08436.1| (hypothetical protein [uncultured bacterium])

HSP 1 Score: 191.045 bits (484), Expect = 1.448e-53
Identity = 106/249 (42.57%), Postives = 146/249 (58.63%), Query Frame = 0
Query:   45 LPFPVAFSPESVEMSSVHLEEAHTRIASLVEDSKIGGASFSVMKDGEIVTMQTYGYANVETEQPIRADTIFRIFSQSKPISTAAFLTLIDEGLVSYNDPVSLYIPEFATMKV----YDPITGTN----VALERPITIWHLLTHTSGLTYGFMDNTHVDQLYNKNDILNP--DEDLATKIKRVAKLPLTCQPGTKWQYGLSTDVLLLIASLVTGLPIDEFLQRRLLEPLGMTDTGFYVPLYNAHKLAIVY 283
            LP      PE V +++  L      +   V + KI GA   + + G+I   +T+G A+VE  +P+R DTI RI+S SKPI++ A + L +EG    NDPV+ Y+PEFA M+V     DP TG      V  +RPITI  LL HTSGLTYG   +T VD+ Y K        D++LA  + ++A+LPL  +PGT+W Y LS DVL  +  +++G   D+FLQ R+  PL M DTGFYVP     +LA +Y
Sbjct:   36 LPVAAPEEPEEVGLANSRLAHIRAAMNRYVAEKKIPGAIGLIARRGKIAYQETFGMADVEAGKPMRLDTIHRIYSMSKPITSVAVMMLYEEGRFQLNDPVAKYLPEFAKMQVGVEEKDPQTGQPVLKLVPAKRPITIRDLLRHTSGLTYGVFGDTLVDREYRKTKGTKGVMDQNLAHFVTQLARLPLLYEPGTRWNYSLSVDVLGRLVEVLSGKSFDQFLQERIFAPLDMRDTGFYVPASKKDRLAQLY 284          
The following BLAST results are available for this feature:
BLAST of EWM21231.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101346|gb|EWM21231.1|0.000e+0100.00beta-lactamase [Nannochloropsis gaditana][more]
gi|1147711501|gb|AQQ75272.1|5.171e-5842.28hypothetical protein, partial [uncultured bacteriu... [more]
gi|1147711509|gb|AQQ75278.1|1.688e-5739.67hypothetical protein, partial [uncultured bacteriu... [more]
gi|1120301449|ref|WP_073167123.1|3.164e-5643.44hypothetical protein [Tangfeifania diversioriginum... [more]
gi|528059751|gb|EPX64533.1|4.353e-5540.00Beta-lactamase class C protein [Cystobacter fuscus... [more]
gi|759716927|ref|WP_043428358.1|2.053e-5439.92serine hydrolase [Cystobacter fuscus][more]
gi|219950521|gb|ACL60913.1|7.748e-5441.84beta-lactamase [Methylobacterium nodulans ORS 2060... [more]
gi|1194598589|ref|WP_085933834.1|1.192e-5340.17serine hydrolase [Enhydrobacter aerosaccus] >gi|11... [more]
gi|992051790|ref|WP_061027396.1|1.212e-5339.22serine hydrolase [Bradyrhizobium sp. CCH5-F6][more]
gi|472338620|dbj|BAN08436.1|1.448e-5342.57hypothetical protein [uncultured bacterium][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9473rna9473Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications