EWM21243.1, cds9431 (CDS) Nannochloropsis gaditana

Overview
NameEWM21243.1
Unique Namecds9431
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:348129..348173 -
Alignment locationKK037253.1:347701..347795 -
Alignment locationKK037253.1:347336..347450 -
Alignment locationKK037253.1:346966..347034 -
Alignment locationKK037253.1:346683..346790 -
Alignment locationKK037253.1:346464..346607 -
Alignment locationKK037253.1:346191..346290 -
Alignment locationKK037253.1:345918..346000 -
Alignment locationKK037253.1:345701..345772 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21243.1
ProductSGF29 tudor-like domain protein
Orig transcript idgnl|cribi|Naga_100896g2.457.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:348129..348173 -
KK037253.1supercontigKK037253.1:347701..347795 -
KK037253.1supercontigKK037253.1:347336..347450 -
KK037253.1supercontigKK037253.1:346966..347034 -
KK037253.1supercontigKK037253.1:346683..346790 -
KK037253.1supercontigKK037253.1:346464..346607 -
KK037253.1supercontigKK037253.1:346191..346290 -
KK037253.1supercontigKK037253.1:345918..346000 -
KK037253.1supercontigKK037253.1:345701..345772 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: INTERPRO
TermDefinition
IPR024610ING_N
IPR010750SGF29_tudor-like_dom
Homology
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|585101371|gb|EWM21243.1| (SGF29 tudor-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MAYAKHHEESGTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSLQGAKESKPEERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSHIYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVFKAI 276
            MAYAKHHEESGTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSLQGAKESKPEERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSHIYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVFKAI
Sbjct:    1 MAYAKHHEESGTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSLQGAKESKPEERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSHIYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVFKAI 276          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|298711365|emb|CBJ32510.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.792 bits (447), Expect = 1.173e-50
Identity = 106/274 (38.69%), Postives = 159/274 (58.03%), Query Frame = 0
Query:    1 MAYAKHHEESGTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSLQGAKESKPEERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSHIYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVFK 274
            MAY    +E  T+++DF++ +  +PN+I+R+  LMR LDKDA  L   L  L  ++LGQA+  ++   +S+  +   LV+D    AEI  L +       EK+ + +Q   M+   ++ L  D+ +F+  L   GE+D   A+  D VAF+++  E  +VLG+V+++  ++G YEV+D DD+S   T+ E Q++ L    E +  +  KGD+V AVY +TTSFY  TIA PP RG G  G G       VQF DDADE G TP R VP+ H+ K
Sbjct:    1 MAYRGPMQEEATFVDDFMDGMTTMPNEIRRNSQLMRTLDKDAHGLSSELEALHNKFLGQAREKMKARGDSQELDPKVLVDDPPLMAEIDSLFSRTKQIVDEKVAIADQTHQMVADRLKRLTTDLASFEQTLHSQGEFDVGAAQPGDQVAFQEDP-EADWVLGRVLSWMHETGQYEVMDEDDNSKKLTMDEHQVIPL----EGRTERLSKGDDVLAVYVDTTSFYHATIAIPP-RGRGQIGNGGTA---HVQFVDDADEHGVTPHRAVPIIHIIK 265          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|219120346|ref|XP_002180913.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407629|gb|EEC47565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 124.02 bits (310), Expect = 1.189e-29
Identity = 86/284 (30.28%), Postives = 148/284 (52.11%), Query Frame = 0
Query:   12 TYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAK------------------RSLQGAKESKPE--ERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGAR--KDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSH-IYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHV 272
            TYLE F+E L  LP++++R+  L+++LDK +      LR L+++Y+ QA+                  R + G +   P   E ++ V++ E   +I   +   + K  EKI +  Q  D +    + L  D+   +  L+ TG++     +  K + +A  Q   E+ ++L KVV +   +G Y++ D D +S+ ++TLPE+Q+++L         K + GD V+AVYP+TTSFY  T+ Q PR+           P + V F DD+DEFG T  ++VP+++ 
Sbjct:   65 TYLEAFIETLSTLPHEVRRNMDLIKDLDKASGVRGETLRQLQQRYIHQAEDKMMQLELVEREDGTHGVRVIDGTEVIIPTTYELVEYVQNAELERQIQQAQEDCLQKADEKIAIAQQALDRIDAVCQRLDHDLGAMELLLQNTGDFQTQETKTAKPNDLAACQITPESEWILAKVVTFDPQTGVYKLADEDVESNKLFTLPESQVIILYAIE-----KLRAGDSVYAVYPDTTSFYPATVVQAPRKA--------STPFVTVNFVDDSDEFGVTHDKFVPLKYT 335          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|1210516202|dbj|GAX25018.1| (SAGA-associated factor 29 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 6.270e-28
Identity = 89/287 (31.01%), Postives = 141/287 (49.13%), Query Frame = 0
Query:   12 TYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSL-----------QGAKESKPE-------------ERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSH-IYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVF 273
            TYLE F+E L  LP  ++R+  L+++LD+       +L+ L   YL QA+  +           +G +  + E             E +    D +A  +I  L+A  + K  EK+ V  Q  + +   +  L  D+      L+  GE+      + + +A  Q    T ++L KV+ +   +  Y++VD D +SH ++ LPE Q+V+L  G +    +  KGD VFAVYP+TTSFY  T+ Q PR+  G S      P + V F DD+DEFG T  + V +QH+ 
Sbjct:    7 TYLESFVESLTTLPYQVRRNLELVQDLDRSYQSDLAKLQELYTAYLQQAEEKVLQLEVAPMETGKGVRVIRKEDAEKAPIIIPTTAELMAYTYDADAMRQIEALQADCLQKADEKVCVARQAYEWIDAVVERLDDDLQALSKILQAQGEFQQEEVAQPNDLAACQ--LGTEWILAKVLEFDTKTRTYKLVDEDVESHKVFHLPEDQVVILR-GVD----RLSKGDTVFAVYPDTTSFYQATVVQVPRKTAGQSS-----PFVIVSFMDDSDEFGVTHDKTVQLQHIM 281          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|1210514418|dbj|GAX26748.1| (SAGA-associated factor 29 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 6.747e-28
Identity = 88/287 (30.66%), Postives = 140/287 (48.78%), Query Frame = 0
Query:   12 TYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAKRSL-----------QGAK-------ESKP------EERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEYDFLGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSH-IYTLPETQIVLLNPGSEAQRLKYQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDADEFGHTPIRWVPVQHVF 273
            TYLE F+E L  LP  ++R+  L+++LD+       +L+ L   YL QA+  +           +G +       E+ P       E +    D +A  +I  L+A  + K  EK+ V  Q  + +   +  L  D+      L+  GE+      + + +A  Q    T ++L KV+ +   +  Y+++D D +SH ++ LPE Q+V+L         +  KGD VFAVYP+TTSFY  T+ Q PR+  G S      P + V F DD+DEFG T  + V +QH+ 
Sbjct:    7 TYLEAFVESLTTLPYQVRRNLELVQDLDRSYQSDLAKLQELYTAYLQQAEEKVLQLEVAPMEAGKGVRVIRKEDAENAPIIIPTTAELMNYTYDADAMRQIEALQADCLQKADEKVCVAKQAYEWIDAVVERLDDDLQTLSKLLQAQGEFQQEEVAQPNDLAACQ--VGTEWILAKVLEFDTATRTYKLIDEDVESHKVFHLPEDQVVILRCLD-----RLSKGDTVFAVYPDTTSFYQATVVQVPRKTAGQSS-----PFVIVSFMDDSDEFGVTHDKAVQLQHIM 281          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|1072229958|gb|OEU14692.1| (hypothetical protein FRACYDRAFT_188007 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.6709 bits (239), Expect = 6.894e-20
Identity = 83/303 (27.39%), Postives = 140/303 (46.20%), Query Frame = 0
Query:   12 TYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYL--------------GQAKRSLQGAKESK--------PEERLKLVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEY--DF-------------LGARKDDAVAFKQNVYETHFVLGKVVNYRADSGAYEVVDVDDDSH-IYTLPETQIVLLNPGSEAQRLK-YQKGDEVFAVYPETTSFYLGTIAQPPRRGMGHSGLGQDVPKLAVQFQDDAD-EFGHTPIRWVPVQHVFK 274
            TYLE F+E L  LP +++R+  LM+++D   + L      L+  Y+              G+  R L    + +         EE +  V +    ++I  LRA  + +  EK+++  Q   M+ +  + L  D+   + EL  +     DF              GA K + +A  Q    + ++L KVV +   +G + + D D +S+ ++ LP + +++L      +R++  + GD VFAVYP+TTSFY GTIAQ PR+  G          + + F DD D   G T  + V ++HV  
Sbjct:   11 TYLEGFIESLSTLPAELRRNLDLMKDMDGSCSTLMDETMRLQLDYIRRVEDKIGRLEVVDGEGVRVLSNNDDIRKLPVVIPTTEELMAYVHEPTTLSQIESLRADSLQQAEEKVEIAKQTYKMIDNLYQKLDADLRQREMELSLSTRNGPDFHHHHPSNATATMNQGAPKLNDLAAIQVPGTSDWILAKVVTHDPKTGMFTLSDEDVESNKVFNLPASSVIIL------ERMRNIRSGDVVFAVYPDTTSFYQGTIAQQPRKAAGGGMF------VTITFLDDEDAATGETHDKAVLLKHVMS 301          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|566014525|gb|ETI37436.1| (hypothetical protein F443_16573 [Phytophthora parasitica P1569] >gi|567951973|gb|ETK77658.1| hypothetical protein L915_16107 [Phytophthora parasitica] >gi|567980649|gb|ETL31103.1| hypothetical protein L916_16000 [Phytophthora parasitica] >gi|570942040|gb|ETP07297.1| hypothetical protein F441_16402 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 87.4261 bits (215), Expect = 1.164e-16
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 0
Query:   11 GTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAK-----RSLQGAKESKPEERLK-LVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEY--DFLGARKDDAVAFKQNVYE-THFVLGKVVNYRADSGAYEVVD 178
            GTY+ED+LE +  LP++I+R+F LMRELDK +  L   L+  +K YL  A+     R     K    E+ L+ L+E  +   ++ +  AL++ K  EKI +  Q  D++ HH+R L  D++++   L+  GEY  D    RK   VA    V++ +H V    V  +  +GA  + D
Sbjct:    2 GTYVEDYLESMYLLPSEIKRNFDLMRELDKTSYPLLEELKTTQKTYLTSARQKVLARCADATKGEATEQELRELIEADDMVQKLQEKHALVVQKLDEKIAIAAQSYDIVDHHIRRLDRDLESYSALLKANGEYQEDSRPQRKKQKVAAASTVHQVSHTVPNVNVRSKNSTGAGSMKD 178          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|570318266|gb|ETO66214.1| (hypothetical protein F444_16550 [Phytophthora parasitica P1976])

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 0
Query:   11 GTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAK-----RSLQGAKESKPEERLK-LVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEY--DFLGARKDDAVAFKQNVYE-THFVLGKVVNYRADSGAYEVVD 178
            GTY+ED+LE +  LP++I+R+F LMRELDK +  L   L+  +K YL  A+     R     K    E+ L+ L+E  +   ++ +  AL++ K  EKI +  Q  D++ HH+R L  D++++   L+  GEY  D    RK   VA    V++ +H V    V  +  +GA  + D
Sbjct:    2 GTYVEDYLESMYLLPSEIKRNFDLMRELDKTSYPLLEELKTTQKTYLTSARQKVLARCADATKGEATEQELRELIEADDMVQKLQEKHALVVQKLDEKIAIAAQSYDIVDHHIRRLDRDLESYSALLKANGEYQEDSRPQRKKQKVAAASTVHQVSHTVPNVNVRSKNSTGAGSMKD 178          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|675205795|ref|XP_008911782.1| (hypothetical protein PPTG_15786 [Phytophthora parasitica INRA-310] >gi|568010167|gb|ETL84357.1| hypothetical protein L917_15798 [Phytophthora parasitica] >gi|568040062|gb|ETM37529.1| hypothetical protein L914_15928 [Phytophthora parasitica] >gi|568087961|gb|ETN02825.1| hypothetical protein PPTG_15786 [Phytophthora parasitica INRA-310])

HSP 1 Score: 87.4261 bits (215), Expect = 1.355e-16
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 0
Query:   11 GTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAK-----RSLQGAKESKPEERLK-LVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEY--DFLGARKDDAVAFKQNVYE-THFVLGKVVNYRADSGA 173
            GTY+ED+LE +  LP++I+R+F LMRELDK +  L   L+  +K YL  A+     R     K    E+ L+ L+E  +   ++ +  AL++ K  EKI +  Q  D++ HH+R L  D++++   L+  GEY  D    RK   VA    V++ +H V    V  +  +GA
Sbjct:    2 GTYVEDYLESMYLLPSEIKRNFDLMRELDKTSYPLLEELKTTQKTYLTSARQKVLARCADATKGEATEQELRELIEADDMVQKLQEKHALVVQKLDEKIAIAAQSYDIVDHHIRRLDRDLESYSALLKANGEYQEDSRPQRKKQKVAAASTVHQVSHTVPNVNVRSKNSTGA 173          
BLAST of EWM21243.1 vs. NCBI_GenBank
Match: gi|970651828|gb|KUF90591.1| (IQ domain-containing protein H [Phytophthora nicotianae])

HSP 1 Score: 87.4261 bits (215), Expect = 1.514e-16
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 0
Query:   11 GTYLEDFLERLQPLPNDIQRSFHLMRELDKDATELHVRLRGLEKQYLGQAK-----RSLQGAKESKPEERLK-LVEDKEASAEIADLRALIMAKQREKIDVVNQVSDMMKHHMRMLKVDMDNFQTELRETGEY--DFLGARKDDAVAFKQNVYE-THFVLGKVVNYRADSGA 173
            GTY+ED+LE +  LP++I+R+F LMRELDK +  L   L+  +K YL  A+     R     K    E+ L+ L+E  +   ++ +  AL++ K  EKI +  Q  D++ HH+R L  D++++   L+  GEY  D    RK   VA    V++ +H V    V  +  +GA
Sbjct:    2 GTYVEDYLESMYLLPSEIKRNFDLMRELDKTSYPLLEELKTTQKAYLTSARQKVLARCADATKGEATEQELRELIEADDMVQKLQEKHALVVQKLDEKIAIAAQSYDIVDHHIRRLDRDLESYSALLKANGEYQEDSRPQRKKQKVAAASTVHQVSHTVPNVNVRSKNSTGA 173          
The following BLAST results are available for this feature:
BLAST of EWM21243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101371|gb|EWM21243.1|0.000e+0100.00SGF29 tudor-like domain protein [Nannochloropsis g... [more]
gi|298711365|emb|CBJ32510.1|1.173e-5038.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|219120346|ref|XP_002180913.1|1.189e-2930.28predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516202|dbj|GAX25018.1|6.270e-2831.01SAGA-associated factor 29 [Fistulifera solaris][more]
gi|1210514418|dbj|GAX26748.1|6.747e-2830.66SAGA-associated factor 29 [Fistulifera solaris][more]
gi|1072229958|gb|OEU14692.1|6.894e-2027.39hypothetical protein FRACYDRAFT_188007 [Fragilario... [more]
gi|566014525|gb|ETI37436.1|1.164e-1633.90hypothetical protein F443_16573 [Phytophthora para... [more]
gi|570318266|gb|ETO66214.1|1.188e-1633.90hypothetical protein F444_16550 [Phytophthora para... [more]
gi|675205795|ref|XP_008911782.1|1.355e-1634.30hypothetical protein PPTG_15786 [Phytophthora para... [more]
gi|970651828|gb|KUF90591.1|1.514e-1634.30IQ domain-containing protein H [Phytophthora nicot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9462rna9462Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications