EWM21249.1, cds9423 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|585101382|gb|EWM21249.1| (dna mismatch repair protein Msh4 putative, partial [Nannochloropsis gaditana]) HSP 1 Score: 1300.42 bits (3364), Expect = 0.000e+0 Identity = 638/638 (100.00%), Postives = 638/638 (100.00%), Query Frame = 0
Query: 1 PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ 638
PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ
Sbjct: 1 PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ 638
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|299115252|emb|CBN74093.1| (MutS protein homolog 2A [Ectocarpus siliculosus]) HSP 1 Score: 464.537 bits (1194), Expect = 1.699e-150 Identity = 253/562 (45.02%), Postives = 352/562 (62.63%), Query Frame = 0
Query: 3 LPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGH-----------PSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELR--LELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLD 551
L + LR SLQD L+ PDL+TL ++ R++AGL++++K+Y F++ + F L GH + +F + ++ + F +F LVE V+DM LPDL ++ ++ P L EL+EE+D++++ +E++ ++A G+ D G + + L+ K G + FR TK +++L+ + E L++LKNGV+FTT+ LK+ GS +++ C ++Y KQS LV+KAVETA TYLPL+E+A+ LV+ELD+LVS VAA+AP+ RP + KG G + V G RHPCLE Q+ + FIPNDY ++ + F ++TGPNMGGKSTYIR LG + VMAQ+GS+VP ++ E+ V DAV ARVGAGDA QRGVSTFMAEMLEAS I+ A+ SL+IIDELGRGTSTFDGFGLAW+ISE+I++ QAPCLFATHFHE+T + + V+N+HV+A A DKITMLY+V GPCLES+GIHVA MA FP +VI EA KA LE+ +
Sbjct: 261 LKDEAGLRGSLQDGPLKACPDLDTLKTKMQRKKAGLMEVFKLYVFSRSVHTFGDVLS------GHFGEDEGEEETETETLINDKFVKGFAKLADGFSRFLQLVEHVLDMDALPDLVVNSSYSPELGELREEMDQIKEEVEDLHQEARDGWC-DFGEKDKCLLDEDKQRG-FFFRLTKANLEQELKR-RRKGVETLAVLKNGVHFTTSELKKL----------------------------------------GSRYKS----C---------RLEYEEKQSGLVEKAVETAATYLPLVESASALVSELDILVSFADVAALAPTELVRPTMKDKGTGV-LKVMGCRHPCLEWQDEMNFIPNDYDMSSDGASFVVVTGPNMGGKSTYIRTLGAVTVMAQVGSFVPCESAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTTQAPCLFATHFHEMTTMAEHDKRVKNMHVTAQAKEDKITMLYEVREGPCLESFGIHVATMAGFPRAVIREAKRKAATLENFE 759
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|1000220491|gb|KXJ89501.1| (putative DNA mismatch repair protein msh-2 [Microdochium bolleyi]) HSP 1 Score: 403.29 bits (1035), Expect = 1.147e-128 Identity = 226/564 (40.07%), Postives = 321/564 (56.91%), Query Frame = 0
Query: 5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPA-----DDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSA------LAGADK--ITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSK 553
D +LR ++Q++ L+ PDL LA R R++A L D+ + Y RLP FLG LE DE + PL++++++ L + K + +VE +D+ L + I P D L ++ ++D++ ++ F+ A Q+ ++ LE K G +C R T+ ++KK + C T K NGVYFTT L + F L S Y+ QSSLV + V A +Y P++E A ++A LDV+VSL H + AP+ Y RP + +G G ++ K RHPCLE+Q+ ++FI ND LTRGES F ++TGPNMGGKSTYIR +G + +MAQIG +VP E+ + D++LARVGA D+ +GVSTFMAEMLE + IL++AT SL+IIDELGRGTST+DGFGLAWAISE+I++ + +FATHFHELTAL ++ P V+NLHV+A + A+K +T+LY+VEPG C +S+GIHVA + RFP V+ A KA ELE +K
Sbjct: 101 NDTELRQTMQEEHLKSVPDLYRLANRFQRKKANLEDVVRAYQVVIRLPGFLGTLEGV-MDEVYKD-PLEEQYTKTLRDMSNSLGKLAEMVETTVDLDALDNHEFIIKPEFDDGLRIIRRKLDKLRHEMDTEFRNAADDLNQEENKKIFLENHKVHG-WCMRLTRTEAGCIRNNKKYQECSTQK--------NGVYFTTKQLLASRREFDQL-----------------------------------------------------SQTYNRTQSSLVSEVVGVAASYCPILEQLAGVLAHLDVIVSLAHCSVHAPTSYVRPKIHPRGQGSTVL-KEARHPCLEMQDDIQFITNDVELTRGESSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSEAEVTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALAEQYPQVKNLHVTAHIASGTASSAEKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTAK 599
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|751176244|gb|KIL62230.1| (hypothetical protein M378DRAFT_25664 [Amanita muscaria Koide BX008]) HSP 1 Score: 411.379 bits (1056), Expect = 1.802e-128 Identity = 242/602 (40.20%), Postives = 337/602 (55.98%), Query Frame = 0
Query: 5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLP--DLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIEL----RLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSAL------AGADK-ITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGN 593
D R +L+D L+ PDL L+ R R + L D+ +VY +LP + LE D+ L + + + L QE +K+ +VE +D+ L + I P HDP L EL + + V D ++ + R +DLG+EL LE + G YCFR TK +D K + K ++ L K+GV+FTT LK + F DL S YS QS LV++ V A TY P++E+ ++A+LDV++S HV+A AP Y +P L KG G G++++ RHPCLE+QE + FIPND + +G+S ++TGPNMGGKSTYIR +G + +MAQ+G +VP +LP+ D++L RVGAGD+ +GVSTFMAEMLE +TIL+ AT SL+IIDELGRGTST+DGFGLAWAISE+I ++A CLFATHFHELTAL+Q+ P ++NLHV A D+ IT+LY+VEPG C +S+GIHVA++A FP +VI+ A KA ELE D + + + S ++ L S S NV G S+ +
Sbjct: 388 NDSNARRTLRDDYLKFIPDLNRLSKRFRRSVSSLEDVVRVYQAILKLPGIIETLENIELDQ-ECVQLLNEIYVQTLRGCQESLEKYGEMVEQTLDLDELDHHNYVIKPDHDPRLRELSKRLTHVRDGLD----QEHRAIGKDLGLELDKKLHLENNQVYG-YCFRLTK--NDAKALSKKYIE---LGTTKSGVFFTTKALKSLAEEFKDL-----------------------------------------------------SQSYSRTQSGLVREVVNIASTYAPVLESLDGVLAQLDVILSFAHVSANAPEPYVKPHLVDKGDG-GLILRDARHPCLEVQEEIHFIPNDVEMNKGQSELLIITGPNMGGKSTYIRQVGVIALMAQVGCFVPCSEAQLPIFDSILCRVGAGDSQLKGVSTFMAEMLETATILRAATQDSLIIIDELGRGTSTYDGFGLAWAISEHIASEIRAFCLFATHFHELTALDQQVPHIKNLHVVAHVTETNDGNQDRDITLLYKVEPGICDQSFGIHVAKLANFPNNVIKLAKRKADELEDFDKRDDVSVSDVDEGVHIME----GLLRSWSSTVGNVGGDSQDD 920
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|698467739|ref|XP_009705270.1| (PREDICTED: DNA mismatch repair protein Msh2, partial [Cariama cristata]) HSP 1 Score: 397.512 bits (1020), Expect = 1.064e-127 Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query: 6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
D +LR LQ+ LR PDL LA + RQ A L D Y++Y +LP + ALE + EG L F L I F KF ++E +DM + + + + DP L EL+E+++E+E+ +++ K A + + G ++LE G + FR T CK K +L+N + ++ +F + K LS++ + +Y Q ++VK+ + A Y I+ ++A+LD +VS HV+ AP Y RPV+ KG G+ I++KG RHPC+E+Q+ V FIPND +G+ F ++TGPNMGGKSTYIR G + +MAQIG +VP D+ E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI + A C+FATHFHELTAL + P V NLHV+AL D +TMLY+V+ G C +S+GIHVA +A FP VIE A KA ELE + G S
Sbjct: 10 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVHALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSNES 504
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677277049|gb|KFP68367.1| (DNA mismatch repair protein Msh2, partial [Cariama cristata]) HSP 1 Score: 397.512 bits (1020), Expect = 1.317e-127 Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query: 6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
D +LR LQ+ LR PDL LA + RQ A L D Y++Y +LP + ALE + EG L F L I F KF ++E +DM + + + + DP L EL+E+++E+E+ +++ K A + + G ++LE G + FR T CK K +L+N + ++ +F + K LS++ + +Y Q ++VK+ + A Y I+ ++A+LD +VS HV+ AP Y RPV+ KG G+ I++KG RHPC+E+Q+ V FIPND +G+ F ++TGPNMGGKSTYIR G + +MAQIG +VP D+ E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI + A C+FATHFHELTAL + P V NLHV+AL D +TMLY+V+ G C +S+GIHVA +A FP VIE A KA ELE + G S
Sbjct: 11 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVHALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSNES 505
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|700353155|ref|XP_009920809.1| (PREDICTED: DNA mismatch repair protein Msh2 [Haliaeetus albicilla]) HSP 1 Score: 397.127 bits (1019), Expect = 2.054e-127 Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query: 6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
D +LR LQ+ LR PDL LA + RQ A L D Y++Y +LP + ALE + EG L F L I F KF ++E +DM + + + + DP L EL+E+++E+E+ +++ K A + + G ++LE G + FR T CK K +L+N + ++ +F + K LS++ + +Y Q ++VK+ + A Y I+ ++A+LD +VS HV+ AP Y RPV+ KG G+ I++KG RHPC+E+Q+ V FIPND +G+ F ++TGPNMGGKSTYIR G + +MAQIG +VP D+ E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI + A C+FATHFHELTAL + P V NLHV+AL D +TMLY+V+ G C +S+GIHVA +A FP VIE A KA ELE + G S
Sbjct: 15 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPSVVEALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIILMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 509
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677385875|gb|KFQ06983.1| (DNA mismatch repair protein Msh2, partial [Haliaeetus albicilla]) HSP 1 Score: 396.356 bits (1017), Expect = 3.217e-127 Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query: 6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
D +LR LQ+ LR PDL LA + RQ A L D Y++Y +LP + ALE + EG L F L I F KF ++E +DM + + + + DP L EL+E+++E+E+ +++ K A + + G ++LE G + FR T CK K +L+N + ++ +F + K LS++ + +Y Q ++VK+ + A Y I+ ++A+LD +VS HV+ AP Y RPV+ KG G+ I++KG RHPC+E+Q+ V FIPND +G+ F ++TGPNMGGKSTYIR G + +MAQIG +VP D+ E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI + A C+FATHFHELTAL + P V NLHV+AL D +TMLY+V+ G C +S+GIHVA +A FP VIE A KA ELE + G S
Sbjct: 11 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPSVVEALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIILMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 505
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|353237857|emb|CCA69819.1| (probable DNA mismatch repair protein MSH2 [Serendipita indica DSM 11827]) HSP 1 Score: 406.757 bits (1044), Expect = 4.533e-127 Identity = 228/559 (40.79%), Postives = 324/559 (57.96%), Query Frame = 0
Query: 5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLS--ISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSAL------AGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGN 555
+D R +LQD LR PD+ + R ++ A L D+ +VY A R+P + L + +E S + ++++ + ++ KF +VE ID+ L + I P +D L L ++I EV ++ ++ +R D+ +L LE T G YCFR +K +D K+ K E LS K GV FTT LK S + +E+R +Y+ QS+LV + V A Y P++EA ++A LDV+VS HV+A APS Y +PV+ KG G +++K RHPCLE+QE + FIPND + RG+S F ++TGPN GGKSTY R +G + +MAQ+G +VP ++ E+P+ D +LARVGAGD+ +GVSTFMAEMLE++ IL+TATP+SL+IIDELGRGTST DGFG+AWAISEYI ++A CLFATHFHELT L Q+ P V+N HV A + +IT+LY+VE GP +S+GIHVA++ FP SV++ A KA+ELE ++G+
Sbjct: 356 KDSSSRRALQDDFLRYMPDMHRICKRFHKKVASLEDVIRVYQAAIRVPDLIEKLNDIDTEEYADSVLIAEQYTTAFQKFDDNITKFKEMVEQTIDLDQLKNHQYIIKPDYDEQLQSLADQIAEVVSALDEEHERVSRDLGLDMDKKLHLENNPTHG-YCFRVSK--NDSKVVEKKKDYTE-LSTQKAGVLFTTKTLKRHSVEY----SELRE-------------------------------------------------RYNRVQSTLVAEVVSIASGYTPVLEAVDDIIAHLDVIVSFAHVSANAPSNYVKPVVTEKGTG-NLLLKEARHPCLEVQEDISFIPNDVEMIRGKSEFHIITGPNTGGKSTYARQIGVIALMAQVGCFVPCESAEIPIFDCILARVGAGDSQLKGVSTFMAEMLESAAILKTATPNSLIIIDELGRGTSTADGFGIAWAISEYIATTIRAFCLFATHFHELTTLSQQIPHVKNAHVVAHVSEGEGSKEKEITLLYKVEEGPSDQSFGIHVAQLCNFPESVVKHAKRKAEELEDFGNEGD 856
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677847760|ref|XP_009067923.1| (PREDICTED: DNA mismatch repair protein Msh2, partial [Acanthisitta chloris]) HSP 1 Score: 393.275 bits (1009), Expect = 4.449e-126 Identity = 222/556 (39.93%), Postives = 312/556 (56.12%), Query Frame = 0
Query: 6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
D +LR LQ+ LR PDL LA + RQ A L D Y++Y +LP + LE + EG L F L I F KF ++E +DM + + + + DP L EL+E+++E+E+ +++ K A + + G ++LE G + FR T CK K +L+N + ++ +F + K LS++ + +Y Q ++VK+ + A Y I+ ++A+LD +VS HV+ AP Y RPV+ KG G+ I++KG RHPC+E+Q+ V FIPND +G+ F ++TGPNMGGKSTYIR G + +MAQIG +VP ++ E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI ++A +FATHFHELTAL + P V NLHV+AL D +TMLY+V+ G C +S+GIHVA +A FP VIE A KA ELE + G S
Sbjct: 10 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVQVLE---KHEGAHQMLLLAVFITPLSDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYVIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YMKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGK-IVLKGARHPCIEVQDEVAFIPNDIAFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIRAFAMFATHFHELTALADEVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 504 The following BLAST results are available for this feature:
BLAST of EWM21249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|