EWM21249.1, cds9423 (CDS) Nannochloropsis gaditana

Overview
NameEWM21249.1
Unique Namecds9423
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:326832..326960 +
Alignment locationKK037253.1:327065..327157 +
Alignment locationKK037253.1:327399..327507 +
Alignment locationKK037253.1:327684..327782 +
Alignment locationKK037253.1:327888..327988 +
Alignment locationKK037253.1:328105..328482 +
Alignment locationKK037253.1:328602..328671 +
Alignment locationKK037253.1:328837..328923 +
Alignment locationKK037253.1:329049..329144 +
Alignment locationKK037253.1:329272..329408 +
Alignment locationKK037253.1:329546..329598 +
Alignment locationKK037253.1:329753..329874 +
Alignment locationKK037253.1:330051..330190 +
Alignment locationKK037253.1:330344..330532 +
Alignment locationKK037253.1:330701..330814 +

Link to JBrowse

Properties
Property NameValue
Start range326832
Start range.
Protein idEWM21249.1
Productdna mismatch repair protein Msh4 putative
Partialtrue
Orig transcript idgnl|cribi|Naga_100609g2.7579.mrna
GeneMSH2A
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:326832..326960 +
KK037253.1supercontigKK037253.1:327065..327157 +
KK037253.1supercontigKK037253.1:327399..327507 +
KK037253.1supercontigKK037253.1:327684..327782 +
KK037253.1supercontigKK037253.1:327888..327988 +
KK037253.1supercontigKK037253.1:328105..328482 +
KK037253.1supercontigKK037253.1:328602..328671 +
KK037253.1supercontigKK037253.1:328837..328923 +
KK037253.1supercontigKK037253.1:329049..329144 +
KK037253.1supercontigKK037253.1:329272..329408 +
KK037253.1supercontigKK037253.1:329546..329598 +
KK037253.1supercontigKK037253.1:329753..329874 +
KK037253.1supercontigKK037253.1:330051..330190 +
KK037253.1supercontigKK037253.1:330344..330532 +
KK037253.1supercontigKK037253.1:330701..330814 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006298mismatch repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0030983mismatched DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR007861DNA_mismatch_repair_MutS_clamp
IPR027417P-loop_NTPase
IPR000432DNA_mismatch_repair_MutS_C
IPR007696DNA_mismatch_repair_MutS_core
Homology
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|585101382|gb|EWM21249.1| (dna mismatch repair protein Msh4 putative, partial [Nannochloropsis gaditana])

HSP 1 Score: 1300.42 bits (3364), Expect = 0.000e+0
Identity = 638/638 (100.00%), Postives = 638/638 (100.00%), Query Frame = 0
Query:    1 PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ 638
            PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ
Sbjct:    1 PSLPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ 638          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|299115252|emb|CBN74093.1| (MutS protein homolog 2A [Ectocarpus siliculosus])

HSP 1 Score: 464.537 bits (1194), Expect = 1.699e-150
Identity = 253/562 (45.02%), Postives = 352/562 (62.63%), Query Frame = 0
Query:    3 LPQDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGH-----------PSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELR--LELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLD 551
            L  +  LR SLQD  L+  PDL+TL  ++ R++AGL++++K+Y F++ +  F   L       GH               +  +F +   ++ + F +F  LVE V+DM  LPDL ++ ++ P L EL+EE+D++++ +E++ ++A  G+  D G + +  L+  K  G + FR TK   +++L+  +    E L++LKNGV+FTT+ LK+                                         GS +++    C          ++Y  KQS LV+KAVETA TYLPL+E+A+ LV+ELD+LVS   VAA+AP+   RP +  KG G  + V G RHPCLE Q+ + FIPNDY ++   + F ++TGPNMGGKSTYIR LG + VMAQ+GS+VP ++ E+ V DAV ARVGAGDA QRGVSTFMAEMLEAS I+  A+  SL+IIDELGRGTSTFDGFGLAW+ISE+I++  QAPCLFATHFHE+T + +    V+N+HV+A A  DKITMLY+V  GPCLES+GIHVA MA FP +VI EA  KA  LE+ +
Sbjct:  261 LKDEAGLRGSLQDGPLKACPDLDTLKTKMQRKKAGLMEVFKLYVFSRSVHTFGDVLS------GHFGEDEGEEETETETLINDKFVKGFAKLADGFSRFLQLVEHVLDMDALPDLVVNSSYSPELGELREEMDQIKEEVEDLHQEARDGWC-DFGEKDKCLLDEDKQRG-FFFRLTKANLEQELKR-RRKGVETLAVLKNGVHFTTSELKKL----------------------------------------GSRYKS----C---------RLEYEEKQSGLVEKAVETAATYLPLVESASALVSELDILVSFADVAALAPTELVRPTMKDKGTGV-LKVMGCRHPCLEWQDEMNFIPNDYDMSSDGASFVVVTGPNMGGKSTYIRTLGAVTVMAQVGSFVPCESAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTTQAPCLFATHFHEMTTMAEHDKRVKNMHVTAQAKEDKITMLYEVREGPCLESFGIHVATMAGFPRAVIREAKRKAATLENFE 759          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|1000220491|gb|KXJ89501.1| (putative DNA mismatch repair protein msh-2 [Microdochium bolleyi])

HSP 1 Score: 403.29 bits (1035), Expect = 1.147e-128
Identity = 226/564 (40.07%), Postives = 321/564 (56.91%), Query Frame = 0
Query:    5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPA-----DDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSA------LAGADK--ITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSK 553
             D +LR ++Q++ L+  PDL  LA R  R++A L D+ + Y    RLP FLG LE    DE +   PL++++++ L  +     K + +VE  +D+  L +    I P  D  L  ++ ++D++   ++  F+ A     Q+   ++ LE  K  G +C R T+       ++KK + C T K        NGVYFTT  L  +   F  L                                                     S  Y+  QSSLV + V  A +Y P++E  A ++A LDV+VSL H +  AP+ Y RP +  +G G  ++ K  RHPCLE+Q+ ++FI ND  LTRGES F ++TGPNMGGKSTYIR +G + +MAQIG +VP    E+ + D++LARVGA D+  +GVSTFMAEMLE + IL++AT  SL+IIDELGRGTST+DGFGLAWAISE+I++ +    +FATHFHELTAL ++ P V+NLHV+A       + A+K  +T+LY+VEPG C +S+GIHVA + RFP  V+  A  KA ELE   +K
Sbjct:  101 NDTELRQTMQEEHLKSVPDLYRLANRFQRKKANLEDVVRAYQVVIRLPGFLGTLEGV-MDEVYKD-PLEEQYTKTLRDMSNSLGKLAEMVETTVDLDALDNHEFIIKPEFDDGLRIIRRKLDKLRHEMDTEFRNAADDLNQEENKKIFLENHKVHG-WCMRLTRTEAGCIRNNKKYQECSTQK--------NGVYFTTKQLLASRREFDQL-----------------------------------------------------SQTYNRTQSSLVSEVVGVAASYCPILEQLAGVLAHLDVIVSLAHCSVHAPTSYVRPKIHPRGQGSTVL-KEARHPCLEMQDDIQFITNDVELTRGESSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSEAEVTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALAEQYPQVKNLHVTAHIASGTASSAEKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTAK 599          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|751176244|gb|KIL62230.1| (hypothetical protein M378DRAFT_25664 [Amanita muscaria Koide BX008])

HSP 1 Score: 411.379 bits (1056), Expect = 1.802e-128
Identity = 242/602 (40.20%), Postives = 337/602 (55.98%), Query Frame = 0
Query:    5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLP--DLSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIEL----RLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSAL------AGADK-ITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLSTSLSDAAQNVLGRSEGN 593
             D   R +L+D  L+  PDL  L+ R  R  + L D+ +VY    +LP  +  LE    D+      L + + + L   QE  +K+  +VE  +D+  L   +  I P HDP L EL + +  V D ++    +  R   +DLG+EL     LE  +  G YCFR TK  +D K  + K ++   L   K+GV+FTT  LK  +  F DL                                                     S  YS  QS LV++ V  A TY P++E+   ++A+LDV++S  HV+A AP  Y +P L  KG G G++++  RHPCLE+QE + FIPND  + +G+S   ++TGPNMGGKSTYIR +G + +MAQ+G +VP    +LP+ D++L RVGAGD+  +GVSTFMAEMLE +TIL+ AT  SL+IIDELGRGTST+DGFGLAWAISE+I   ++A CLFATHFHELTAL+Q+ P ++NLHV A          D+ IT+LY+VEPG C +S+GIHVA++A FP +VI+ A  KA ELE  D + + + S        ++     L  S S    NV G S+ +
Sbjct:  388 NDSNARRTLRDDYLKFIPDLNRLSKRFRRSVSSLEDVVRVYQAILKLPGIIETLENIELDQ-ECVQLLNEIYVQTLRGCQESLEKYGEMVEQTLDLDELDHHNYVIKPDHDPRLRELSKRLTHVRDGLD----QEHRAIGKDLGLELDKKLHLENNQVYG-YCFRLTK--NDAKALSKKYIE---LGTTKSGVFFTTKALKSLAEEFKDL-----------------------------------------------------SQSYSRTQSGLVREVVNIASTYAPVLESLDGVLAQLDVILSFAHVSANAPEPYVKPHLVDKGDG-GLILRDARHPCLEVQEEIHFIPNDVEMNKGQSELLIITGPNMGGKSTYIRQVGVIALMAQVGCFVPCSEAQLPIFDSILCRVGAGDSQLKGVSTFMAEMLETATILRAATQDSLIIIDELGRGTSTYDGFGLAWAISEHIASEIRAFCLFATHFHELTALDQQVPHIKNLHVVAHVTETNDGNQDRDITLLYKVEPGICDQSFGIHVAKLANFPNNVIKLAKRKADELEDFDKRDDVSVSDVDEGVHIME----GLLRSWSSTVGNVGGDSQDD 920          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|698467739|ref|XP_009705270.1| (PREDICTED: DNA mismatch repair protein Msh2, partial [Cariama cristata])

HSP 1 Score: 397.512 bits (1020), Expect = 1.064e-127
Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query:    6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
            D +LR  LQ+  LR  PDL  LA +  RQ A L D Y++Y    +LP  + ALE   + EG     L   F   L  I   F KF  ++E  +DM  + +    +  + DP L EL+E+++E+E+ +++  K A +    + G  ++LE     G + FR T          CK  K     +L+N   +     ++   +F + K                          LS++                   +    +Y   Q ++VK+ +  A  Y   I+    ++A+LD +VS  HV+  AP  Y RPV+  KG G+ I++KG RHPC+E+Q+ V FIPND    +G+  F ++TGPNMGGKSTYIR  G + +MAQIG +VP D+ E+ +VD +LARVGAGD+  +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI   + A C+FATHFHELTAL  + P V NLHV+AL   D +TMLY+V+ G C +S+GIHVA +A FP  VIE A  KA ELE   + G    S
Sbjct:   10 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVHALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSNES 504          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677277049|gb|KFP68367.1| (DNA mismatch repair protein Msh2, partial [Cariama cristata])

HSP 1 Score: 397.512 bits (1020), Expect = 1.317e-127
Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query:    6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
            D +LR  LQ+  LR  PDL  LA +  RQ A L D Y++Y    +LP  + ALE   + EG     L   F   L  I   F KF  ++E  +DM  + +    +  + DP L EL+E+++E+E+ +++  K A +    + G  ++LE     G + FR T          CK  K     +L+N   +     ++   +F + K                          LS++                   +    +Y   Q ++VK+ +  A  Y   I+    ++A+LD +VS  HV+  AP  Y RPV+  KG G+ I++KG RHPC+E+Q+ V FIPND    +G+  F ++TGPNMGGKSTYIR  G + +MAQIG +VP D+ E+ +VD +LARVGAGD+  +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI   + A C+FATHFHELTAL  + P V NLHV+AL   D +TMLY+V+ G C +S+GIHVA +A FP  VIE A  KA ELE   + G    S
Sbjct:   11 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVHALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSNES 505          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|700353155|ref|XP_009920809.1| (PREDICTED: DNA mismatch repair protein Msh2 [Haliaeetus albicilla])

HSP 1 Score: 397.127 bits (1019), Expect = 2.054e-127
Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query:    6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
            D +LR  LQ+  LR  PDL  LA +  RQ A L D Y++Y    +LP  + ALE   + EG     L   F   L  I   F KF  ++E  +DM  + +    +  + DP L EL+E+++E+E+ +++  K A +    + G  ++LE     G + FR T          CK  K     +L+N   +     ++   +F + K                          LS++                   +    +Y   Q ++VK+ +  A  Y   I+    ++A+LD +VS  HV+  AP  Y RPV+  KG G+ I++KG RHPC+E+Q+ V FIPND    +G+  F ++TGPNMGGKSTYIR  G + +MAQIG +VP D+ E+ +VD +LARVGAGD+  +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI   + A C+FATHFHELTAL  + P V NLHV+AL   D +TMLY+V+ G C +S+GIHVA +A FP  VIE A  KA ELE   + G    S
Sbjct:   15 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPSVVEALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIILMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 509          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677385875|gb|KFQ06983.1| (DNA mismatch repair protein Msh2, partial [Haliaeetus albicilla])

HSP 1 Score: 396.356 bits (1017), Expect = 3.217e-127
Identity = 225/556 (40.47%), Postives = 313/556 (56.29%), Query Frame = 0
Query:    6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
            D +LR  LQ+  LR  PDL  LA +  RQ A L D Y++Y    +LP  + ALE   + EG     L   F   L  I   F KF  ++E  +DM  + +    +  + DP L EL+E+++E+E+ +++  K A +    + G  ++LE     G + FR T          CK  K     +L+N   +     ++   +F + K                          LS++                   +    +Y   Q ++VK+ +  A  Y   I+    ++A+LD +VS  HV+  AP  Y RPV+  KG G+ I++KG RHPC+E+Q+ V FIPND    +G+  F ++TGPNMGGKSTYIR  G + +MAQIG +VP D+ E+ +VD +LARVGAGD+  +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI   + A C+FATHFHELTAL  + P V NLHV+AL   D +TMLY+V+ G C +S+GIHVA +A FP  VIE A  KA ELE   + G    S
Sbjct:   11 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPSVVEALE---KHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYGIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR-IVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIILMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 505          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|353237857|emb|CCA69819.1| (probable DNA mismatch repair protein MSH2 [Serendipita indica DSM 11827])

HSP 1 Score: 406.757 bits (1044), Expect = 4.533e-127
Identity = 228/559 (40.79%), Postives = 324/559 (57.96%), Query Frame = 0
Query:    5 QDVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPDLS--ISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSAL------AGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGN 555
            +D   R +LQD  LR  PD+  +  R  ++ A L D+ +VY  A R+P  +  L +   +E   S  + ++++    +  ++  KF  +VE  ID+  L +    I P +D  L  L ++I EV   ++   ++ +R    D+  +L LE   T G YCFR +K  +D K+   K    E LS  K GV FTT  LK  S  +    +E+R                                                  +Y+  QS+LV + V  A  Y P++EA   ++A LDV+VS  HV+A APS Y +PV+  KG G  +++K  RHPCLE+QE + FIPND  + RG+S F ++TGPN GGKSTY R +G + +MAQ+G +VP ++ E+P+ D +LARVGAGD+  +GVSTFMAEMLE++ IL+TATP+SL+IIDELGRGTST DGFG+AWAISEYI   ++A CLFATHFHELT L Q+ P V+N HV A       +   +IT+LY+VE GP  +S+GIHVA++  FP SV++ A  KA+ELE   ++G+
Sbjct:  356 KDSSSRRALQDDFLRYMPDMHRICKRFHKKVASLEDVIRVYQAAIRVPDLIEKLNDIDTEEYADSVLIAEQYTTAFQKFDDNITKFKEMVEQTIDLDQLKNHQYIIKPDYDEQLQSLADQIAEVVSALDEEHERVSRDLGLDMDKKLHLENNPTHG-YCFRVSK--NDSKVVEKKKDYTE-LSTQKAGVLFTTKTLKRHSVEY----SELRE-------------------------------------------------RYNRVQSTLVAEVVSIASGYTPVLEAVDDIIAHLDVIVSFAHVSANAPSNYVKPVVTEKGTG-NLLLKEARHPCLEVQEDISFIPNDVEMIRGKSEFHIITGPNTGGKSTYARQIGVIALMAQVGCFVPCESAEIPIFDCILARVGAGDSQLKGVSTFMAEMLESAAILKTATPNSLIIIDELGRGTSTADGFGIAWAISEYIATTIRAFCLFATHFHELTTLSQQIPHVKNAHVVAHVSEGEGSKEKEITLLYKVEEGPSDQSFGIHVAQLCNFPESVVKHAKRKAEELEDFGNEGD 856          
BLAST of EWM21249.1 vs. NCBI_GenBank
Match: gi|677847760|ref|XP_009067923.1| (PREDICTED: DNA mismatch repair protein Msh2, partial [Acanthisitta chloris])

HSP 1 Score: 393.275 bits (1009), Expect = 4.449e-126
Identity = 222/556 (39.93%), Postives = 312/556 (56.12%), Query Frame = 0
Query:    6 DVQLRCSLQDQALRGTPDLETLAARLLRQRAGLIDIYKVYTFAQRLPLFLGALEETSQDEGHPSAPLQKRFSRDLCRIQEHFQKFSALVECVIDMSTLPD--LSISPAHDPALAELKEEIDEVEDHIENVFKKATRGFAQDLGIELRLELQKTTGTYCFRSTKPADDKKLRACKTVKCEILSILKNGVYFTTAPLKEASGRFLDLKAEVRSPPSLPPSLPPSLPPSLPLSPSLSTLPSGSSWQAPLFNCLPFLYLLVTSVQYSHKQSSLVKKAVETACTYLPLIEAAARLVAELDVLVSLGHVAAMAPSGYRRPVLFGKGGGQGIMVKGGRHPCLELQESVEFIPNDYVLTRGESHFTLLTGPNMGGKSTYIRGLGCLCVMAQIGSYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSS 559
            D +LR  LQ+  LR  PDL  LA +  RQ A L D Y++Y    +LP  +  LE   + EG     L   F   L  I   F KF  ++E  +DM  + +    +  + DP L EL+E+++E+E+ +++  K A +    + G  ++LE     G + FR T          CK  K     +L+N   +     ++   +F + K                          LS++                   +    +Y   Q ++VK+ +  A  Y   I+    ++A+LD +VS  HV+  AP  Y RPV+  KG G+ I++KG RHPC+E+Q+ V FIPND    +G+  F ++TGPNMGGKSTYIR  G + +MAQIG +VP ++ E+ +VD +LARVGAGD+  +GVSTFMAEMLE ++IL+TA+ +SL+IIDELGRGTST+DGFGLAWAISEYI   ++A  +FATHFHELTAL  + P V NLHV+AL   D +TMLY+V+ G C +S+GIHVA +A FP  VIE A  KA ELE   + G    S
Sbjct:   10 DPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNVVQVLE---KHEGAHQMLLLAVFITPLSDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHH-FRIT----------CKEEK-----VLRNNSKYVIVDTQKNGVKFTNSK--------------------------LSSVNDE---------------YMKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGK-IVLKGARHPCIEVQDEVAFIPNDIAFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIRAFAMFATHFHELTALADEVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEEFQNIGKSKES 504          
The following BLAST results are available for this feature:
BLAST of EWM21249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101382|gb|EWM21249.1|0.000e+0100.00dna mismatch repair protein Msh4 putative, partial... [more]
gi|299115252|emb|CBN74093.1|1.699e-15045.02MutS protein homolog 2A [Ectocarpus siliculosus][more]
gi|1000220491|gb|KXJ89501.1|1.147e-12840.07putative DNA mismatch repair protein msh-2 [Microd... [more]
gi|751176244|gb|KIL62230.1|1.802e-12840.20hypothetical protein M378DRAFT_25664 [Amanita musc... [more]
gi|698467739|ref|XP_009705270.1|1.064e-12740.47PREDICTED: DNA mismatch repair protein Msh2, parti... [more]
gi|677277049|gb|KFP68367.1|1.317e-12740.47DNA mismatch repair protein Msh2, partial [Cariama... [more]
gi|700353155|ref|XP_009920809.1|2.054e-12740.47PREDICTED: DNA mismatch repair protein Msh2 [Halia... [more]
gi|677385875|gb|KFQ06983.1|3.217e-12740.47DNA mismatch repair protein Msh2, partial [Haliaee... [more]
gi|353237857|emb|CCA69819.1|4.533e-12740.79probable DNA mismatch repair protein MSH2 [Serendi... [more]
gi|677847760|ref|XP_009067923.1|4.449e-12639.93PREDICTED: DNA mismatch repair protein Msh2, parti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9453rna9453Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications