EWM21254.1, cds9419 (CDS) Nannochloropsis gaditana

Overview
NameEWM21254.1
Unique Namecds9419
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:322489..322517 -
Alignment locationKK037253.1:322196..322246 -
Alignment locationKK037253.1:322040..322114 -
Alignment locationKK037253.1:321835..321910 -
Alignment locationKK037253.1:321407..321628 -
Alignment locationKK037253.1:320825..320978 -
Alignment locationKK037253.1:320231..320664 -

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Properties
Property NameValue
Protein idEWM21254.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100908g2.7647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:322489..322517 -
KK037253.1supercontigKK037253.1:322196..322246 -
KK037253.1supercontigKK037253.1:322040..322114 -
KK037253.1supercontigKK037253.1:321835..321910 -
KK037253.1supercontigKK037253.1:321407..321628 -
KK037253.1supercontigKK037253.1:320825..320978 -
KK037253.1supercontigKK037253.1:320231..320664 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21254.1 vs. NCBI_GenBank
Match: gi|585101390|gb|EWM21254.1| (hypothetical protein Naga_100908g2 [Nannochloropsis gaditana])

HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query:    1 MRQAQRREAELESTTADLTASLAAKQREIETLKASFHALGDSREIVDMESQRLQQELEASRNALEMERQHVVSLQRELRAQQHELSAATAAWREEKEAQESRWQKGVREREGLAQALAEERQKREELERAGAQGGAQGGRVREEMEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPADDVGPGAVRSRGHVNAIHKPYPSSSSSSSFSLLPPAAAGRRVALAPLKPLSRLPFLRPYPAAADVADGVDKVFLASMHYLRTFPWVRLSLLAYLFLLHIYVFSVVGWQAGRIETIHSDTGGSFLEPSNRAFVKDVASTNGGNGV 346
            MRQAQRREAELESTTADLTASLAAKQREIETLKASFHALGDSREIVDMESQRLQQELEASRNALEMERQHVVSLQRELRAQQHELSAATAAWREEKEAQESRWQKGVREREGLAQALAEERQKREELERAGAQGGAQGGRVREEMEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPADDVGPGAVRSRGHVNAIHKPYPSSSSSSSFSLLPPAAAGRRVALAPLKPLSRLPFLRPYPAAADVADGVDKVFLASMHYLRTFPWVRLSLLAYLFLLHIYVFSVVGWQAGRIETIHSDTGGSFLEPSNRAFVKDVASTNGGNGV
Sbjct:    1 MRQAQRREAELESTTADLTASLAAKQREIETLKASFHALGDSREIVDMESQRLQQELEASRNALEMERQHVVSLQRELRAQQHELSAATAAWREEKEAQESRWQKGVREREGLAQALAEERQKREELERAGAQGGAQGGRVREEMEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPADDVGPGAVRSRGHVNAIHKPYPSSSSSSSFSLLPPAAAGRRVALAPLKPLSRLPFLRPYPAAADVADGVDKVFLASMHYLRTFPWVRLSLLAYLFLLHIYVFSVVGWQAGRIETIHSDTGGSFLEPSNRAFVKDVASTNGGNGV 346          
BLAST of EWM21254.1 vs. NCBI_GenBank
Match: gi|553195688|ref|XP_005856184.1| (hypothetical protein NGA_0319300 [Nannochloropsis gaditana CCMP526] >gi|422292862|gb|EKU20164.1| hypothetical protein NGA_0319300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.923 bits (276), Expect = 4.286e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:  145 MEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPA 202
            MEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPA
Sbjct:    1 MEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPA 58          
BLAST of EWM21254.1 vs. NCBI_GenBank
Match: gi|955167831|emb|CUG89192.1| (transmembrane protein, putative [Bodo saltans])

HSP 1 Score: 64.3142 bits (155), Expect = 1.013e-7
Identity = 61/196 (31.12%), Postives = 93/196 (47.45%), Query Frame = 0
Query:  126 ELERAGAQGGAQGGRVREE---MEVRVQALSEQLVRKQEALDAALSNVYAAEARFKASEARVKALESQLAAADYDVESPADDVGPGAVRSRGHVNAIHKPYPSSSSSSSFSLLPPAAAGRRVALAPLKPLSRLPFLRPYPA-------AADVADGVDKVFLASMHYLRTFPWVRLSLLAYLFLLHIYVFSVVGWQA 311
            EL+   +Q  AQ G   ++   +E+RV+ L+E L+ KQ AL+A  S       RF+ S+ R++  ES  AA            GPGA   RG          S  S S+ +L     +   +A   +  L R  F+R   A        A+ A G+DKV L +  +LR    +R+ L+AY+ +LH++VF V+   A
Sbjct:  348 ELKAKKSQSSAQSGGGHQDALGLELRVRELAEMLMEKQAALEAKRSEADQWRTRFEVSQQRLREAESVHAAMSS---------GPGA---RG----------SQQSRSARALYVDEESNLLLA-GDMGELGRTKFIRNLSAKGGWGEQVANAAQGLDKVSLKTGSFLRRNALLRVMLVAYVMMLHVWVFLVLTMSA 520          
The following BLAST results are available for this feature:
BLAST of EWM21254.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101390|gb|EWM21254.1|0.000e+0100.00hypothetical protein Naga_100908g2 [Nannochloropsi... [more]
gi|553195688|ref|XP_005856184.1|4.286e-27100.00hypothetical protein NGA_0319300 [Nannochloropsis ... [more]
gi|955167831|emb|CUG89192.1|1.013e-731.12transmembrane protein, putative [Bodo saltans][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9449rna9449Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications