EWM21287.1, cds9388 (CDS) Nannochloropsis gaditana

Overview
NameEWM21287.1
Unique Namecds9388
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:221259..221275 -
Alignment locationKK037253.1:220862..221115 -
Alignment locationKK037253.1:220449..220525 -
Alignment locationKK037253.1:220155..220330 -
Alignment locationKK037253.1:219990..220104 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21287.1
ProductTatA-like sec-independent protein translocator subunit
Orig transcript idgnl|cribi|Naga_100468g4.9412.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:221259..221275 -
KK037253.1supercontigKK037253.1:220862..221115 -
KK037253.1supercontigKK037253.1:220449..220525 -
KK037253.1supercontigKK037253.1:220155..220330 -
KK037253.1supercontigKK037253.1:219990..220104 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR003369TatA/B/E
Homology
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|585101451|gb|EWM21287.1| (TatA-like sec-independent protein translocator subunit [Nannochloropsis gaditana])

HSP 1 Score: 427.943 bits (1099), Expect = 1.574e-151
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA 212
            MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA
Sbjct:    1 MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA 212          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|873222488|emb|CEM31116.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 85.5001 bits (210), Expect = 4.958e-17
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   19 MPTGSTSIHQVFTFLVLCWLSS-VQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLY----GIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADL-AKEAKAKAEAGAKKEGEERKD 181
            M + S  +    T++ L  +++ V+ F+P  +   L  SGA R  H I    + L P          +  R  G PL     G FGLG  E+VVI + AG++LGP+K+   AR +GK AGELK VP+EF++G+  GE+     K  +  KEA  +  A  K EG+ ++ 
Sbjct:    1 MASCSNMVWICVTWICLLLIAAPVRCFVPPASVQSLRRSGASRTPH-IRPHPSPLLPPAIDAPLSDELTRRTDGSPLTVRHAGFFGLGPTEIVVIVVAAGLLLGPEKVGKFARDLGKIAGELKEVPKEFQQGISDGENVEEMRKEKVQQKEAWRQQLAEMKNEGQPQQQ 168          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|298714218|emb|CBJ27354.1| (Tha4/Hcf106 protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 1.184e-15
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0
Query:   34 VLCWLSSV-----QAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHR----LRGQP-------LYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKA--KAEAGAKKEGEER 179
            VL W  ++     +AF+P+ A    + S AGR Q  ++ + A    +   T++ S  Q +    L G+P         G+FGLG PE+ V   VA ++LGPDK+   A+ +GK AGELK VP+EF+ G++ GE    +T  ++     A   AE   KKE EE+
Sbjct:    7 VLVWACALAARVAEAFVPALAGRAGIMSAAGR-QASMSPAAAGRQNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKTIREIESNGLAVEDAEPATKKEEEEK 169          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1210511735|dbj|GAX29219.1| (hypothetical protein FisN_28Lh047 [Fistulifera solaris])

HSP 1 Score: 75.485 bits (184), Expect = 7.982e-14
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0
Query:   74 PSRPLTTFHS--SIQHRLR---GQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTK 157
            P+ P +++++  ++QH+ +        G+FGLG PE+ +I + A  VLGP K+ +L +  GK AGELK VP+EF+KGL+ GE  A + K
Sbjct:   34 PTIPTSSYYTPAALQHQRKSVANVQTMGLFGLGAPEIAIILVAAAFVLGPQKLAELGKDAGKIAGELKEVPKEFQKGLQEGEANANKLK 122          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1210515499|dbj|GAX25578.1| (hypothetical protein FisN_28Hh047 [Fistulifera solaris])

HSP 1 Score: 75.0998 bits (183), Expect = 1.028e-13
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   32 FLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHS--SIQHRLR---GQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTK 157
            F     +++V AF P    S            R TT      P+ P + +++  ++QH+ +        G+FGLG PE+ +I + A  VLGP K+ +L +  GK AGELK VP+EF+KGL+ GE  A + K
Sbjct:    8 FTAFMMMATVSAFAPVTPQS-----------FRSTTQ-----PTIPSSNYYTPAALQHQRKSVANIQTMGLFGLGAPEIAIILVAAAFVLGPQKLAELGKDAGKIAGELKEVPKEFQKGLQEGEANANKLK 122          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|219122308|ref|XP_002181489.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406765|gb|EEC46703.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 71.633 bits (174), Expect = 3.830e-13
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0
Query:   95 YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLA 161
             G+FGLG PEL VIA+ A  +LGP K+ +L +  GK AGELK VP EF+KGL+ GE  A   K +++
Sbjct:    1 MGLFGLGVPELAVIAIAAAFLLGPQKLAELGKDAGKIAGELKEVPAEFQKGLQEGETKAKSLKDEIS 67          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|397575392|gb|EJK49672.1| (hypothetical protein THAOC_31424 [Thalassiosira oceanica])

HSP 1 Score: 72.4034 bits (176), Expect = 1.130e-12
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0
Query:   97 IFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAE 169
            +FGLG PELV+I + A  +LGP K+ +L +  GK AGELK VP+EF+ GL  GE  A + K ++A    A+ E
Sbjct:   70 LFGLGGPELVIILIAAAFLLGPQKLAELGKEAGKMAGELKEVPKEFQDGLAEGEKQAQELKKEIAASKDAETE 142          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1026078347|ref|XP_016538378.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Capsicum annuum])

HSP 1 Score: 69.3218 bits (168), Expect = 1.868e-11
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 0
Query:   77 PLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAK 173
            PLTT     ++  RG   Y +FGLG PEL VIA VA +V GP ++ ++ R +GK     +   +EFE  LK   DA  Q   D A E   + E  AK
Sbjct:   47 PLTTTRKVSRNSKRGFSCYSLFGLGVPELAVIAGVAALVFGPKQLPEVGRTIGKTVKSFQQAAKEFETELKKEPDAPAQPPVDKAIEGSQEEEQDAK 143          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|223996637|ref|XP_002287992.1| (Tha4/Hcf106 protein [Thalassiosira pseudonana CCMP1335] >gi|220977108|gb|EED95435.1| Tha4/Hcf106 protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.0106 bits (162), Expect = 2.424e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   95 YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLA 161
             G+FGLG PE+ VI +    +LGP K+ +L +  GK AGELK VP+EF++GL  GE  A + K +++
Sbjct:    1 MGLFGLGAPEIAVILVAGAFLLGPQKLAELGKEAGKMAGELKEVPKEFQEGLAEGEKQAQKLKKEIS 67          
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1072228482|gb|OEU13217.1| (hypothetical protein FRACYDRAFT_269727 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.5514 bits (166), Expect = 2.692e-11
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 0
Query:   32 FLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAK 165
             +V   + S  AF PS     L     G +  R   + +S Y    L     S+          G+FGLG PE+ +I + A  +LGPDK+ +  +  GK AGELK VP+EF+ G+  GE  A + K  +A+EA+
Sbjct:    9 LIVSAIVGSASAFAPS-----LPLKNGGMMAARTIDTPSSSYQPVSLQRQRKSVAQV----QTMGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMK--IAEEAE 131          
The following BLAST results are available for this feature:
BLAST of EWM21287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101451|gb|EWM21287.1|1.574e-151100.00TatA-like sec-independent protein translocator sub... [more]
gi|873222488|emb|CEM31116.1|4.958e-1734.91unnamed protein product [Vitrella brassicaformis C... [more]
gi|298714218|emb|CBJ27354.1|1.184e-1535.37Tha4/Hcf106 protein [Ectocarpus siliculosus][more]
gi|1210511735|dbj|GAX29219.1|7.982e-1441.57hypothetical protein FisN_28Lh047 [Fistulifera sol... [more]
gi|1210515499|dbj|GAX25578.1|1.028e-1335.11hypothetical protein FisN_28Hh047 [Fistulifera sol... [more]
gi|219122308|ref|XP_002181489.1|3.830e-1352.24predicted protein, partial [Phaeodactylum tricornu... [more]
gi|397575392|gb|EJK49672.1|1.130e-1247.95hypothetical protein THAOC_31424 [Thalassiosira oc... [more]
gi|1026078347|ref|XP_016538378.1|1.868e-1140.21PREDICTED: sec-independent protein translocase pro... [more]
gi|223996637|ref|XP_002287992.1|2.424e-1146.27Tha4/Hcf106 protein [Thalassiosira pseudonana CCMP... [more]
gi|1072228482|gb|OEU13217.1|2.692e-1134.33hypothetical protein FRACYDRAFT_269727 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9418rna9418Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications