EWM21287.1, cds9388 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|585101451|gb|EWM21287.1| (TatA-like sec-independent protein translocator subunit [Nannochloropsis gaditana]) HSP 1 Score: 427.943 bits (1099), Expect = 1.574e-151 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA 212
MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA
Sbjct: 1 MPHINVDIAGVSDGSKSTMPTGSTSIHQVFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEERKDAAAAWCGDRWPVVCAWDSVLGGVWARKGGSA 212
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|873222488|emb|CEM31116.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 85.5001 bits (210), Expect = 4.958e-17 Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 0
Query: 19 MPTGSTSIHQVFTFLVLCWLSS-VQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLY----GIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADL-AKEAKAKAEAGAKKEGEERKD 181
M + S + T++ L +++ V+ F+P + L SGA R H I + L P + R G PL G FGLG E+VVI + AG++LGP+K+ AR +GK AGELK VP+EF++G+ GE+ K + KEA + A K EG+ ++
Sbjct: 1 MASCSNMVWICVTWICLLLIAAPVRCFVPPASVQSLRRSGASRTPH-IRPHPSPLLPPAIDAPLSDELTRRTDGSPLTVRHAGFFGLGPTEIVVIVVAAGLLLGPEKVGKFARDLGKIAGELKEVPKEFQQGISDGENVEEMRKEKVQQKEAWRQQLAEMKNEGQPQQQ 168
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|298714218|emb|CBJ27354.1| (Tha4/Hcf106 protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 1.184e-15 Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0
Query: 34 VLCWLSSV-----QAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHR----LRGQP-------LYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKA--KAEAGAKKEGEER 179
VL W ++ +AF+P+ A + S AGR Q ++ + A + T++ S Q + L G+P G+FGLG PE+ V VA ++LGPDK+ A+ +GK AGELK VP+EF+ G++ GE +T ++ A AE KKE EE+
Sbjct: 7 VLVWACALAARVAEAFVPALAGRAGIMSAAGR-QASMSPAAAGRQNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKTIREIESNGLAVEDAEPATKKEEEEK 169
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1210511735|dbj|GAX29219.1| (hypothetical protein FisN_28Lh047 [Fistulifera solaris]) HSP 1 Score: 75.485 bits (184), Expect = 7.982e-14 Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0
Query: 74 PSRPLTTFHS--SIQHRLR---GQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTK 157
P+ P +++++ ++QH+ + G+FGLG PE+ +I + A VLGP K+ +L + GK AGELK VP+EF+KGL+ GE A + K
Sbjct: 34 PTIPTSSYYTPAALQHQRKSVANVQTMGLFGLGAPEIAIILVAAAFVLGPQKLAELGKDAGKIAGELKEVPKEFQKGLQEGEANANKLK 122
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1210515499|dbj|GAX25578.1| (hypothetical protein FisN_28Hh047 [Fistulifera solaris]) HSP 1 Score: 75.0998 bits (183), Expect = 1.028e-13 Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 0
Query: 32 FLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHS--SIQHRLR---GQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTK 157
F +++V AF P S R TT P+ P + +++ ++QH+ + G+FGLG PE+ +I + A VLGP K+ +L + GK AGELK VP+EF+KGL+ GE A + K
Sbjct: 8 FTAFMMMATVSAFAPVTPQS-----------FRSTTQ-----PTIPSSNYYTPAALQHQRKSVANIQTMGLFGLGAPEIAIILVAAAFVLGPQKLAELGKDAGKIAGELKEVPKEFQKGLQEGEANANKLK 122
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|219122308|ref|XP_002181489.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406765|gb|EEC46703.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 71.633 bits (174), Expect = 3.830e-13 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0
Query: 95 YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLA 161
G+FGLG PEL VIA+ A +LGP K+ +L + GK AGELK VP EF+KGL+ GE A K +++
Sbjct: 1 MGLFGLGVPELAVIAIAAAFLLGPQKLAELGKDAGKIAGELKEVPAEFQKGLQEGETKAKSLKDEIS 67
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|397575392|gb|EJK49672.1| (hypothetical protein THAOC_31424 [Thalassiosira oceanica]) HSP 1 Score: 72.4034 bits (176), Expect = 1.130e-12 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 97 IFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAE 169
+FGLG PELV+I + A +LGP K+ +L + GK AGELK VP+EF+ GL GE A + K ++A A+ E
Sbjct: 70 LFGLGGPELVIILIAAAFLLGPQKLAELGKEAGKMAGELKEVPKEFQDGLAEGEKQAQELKKEIAASKDAETE 142
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1026078347|ref|XP_016538378.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Capsicum annuum]) HSP 1 Score: 69.3218 bits (168), Expect = 1.868e-11 Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 0
Query: 77 PLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAK 173
PLTT ++ RG Y +FGLG PEL VIA VA +V GP ++ ++ R +GK + +EFE LK DA Q D A E + E AK
Sbjct: 47 PLTTTRKVSRNSKRGFSCYSLFGLGVPELAVIAGVAALVFGPKQLPEVGRTIGKTVKSFQQAAKEFETELKKEPDAPAQPPVDKAIEGSQEEEQDAK 143
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|223996637|ref|XP_002287992.1| (Tha4/Hcf106 protein [Thalassiosira pseudonana CCMP1335] >gi|220977108|gb|EED95435.1| Tha4/Hcf106 protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.0106 bits (162), Expect = 2.424e-11 Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0
Query: 95 YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLA 161
G+FGLG PE+ VI + +LGP K+ +L + GK AGELK VP+EF++GL GE A + K +++
Sbjct: 1 MGLFGLGAPEIAVILVAGAFLLGPQKLAELGKEAGKMAGELKEVPKEFQEGLAEGEKQAQKLKKEIS 67
BLAST of EWM21287.1 vs. NCBI_GenBank
Match: gi|1072228482|gb|OEU13217.1| (hypothetical protein FRACYDRAFT_269727 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.5514 bits (166), Expect = 2.692e-11 Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 32 FLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAK 165
+V + S AF PS L G + R + +S Y L S+ G+FGLG PE+ +I + A +LGPDK+ + + GK AGELK VP+EF+ G+ GE A + K +A+EA+
Sbjct: 9 LIVSAIVGSASAFAPS-----LPLKNGGMMAARTIDTPSSSYQPVSLQRQRKSVAQV----QTMGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMK--IAEEAE 131 The following BLAST results are available for this feature:
BLAST of EWM21287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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