EWM21298.1, cds9376 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|585101472|gb|EWM21298.1| (succinate dehydrogenase subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 333.569 bits (854), Expect = 1.067e-115 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA 165
MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA
Sbjct: 1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA 165
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|1214709220|gb|OWZ20420.1| (SDH4, succinate dehydrogenase subunit 4 [Phytophthora megakarya]) HSP 1 Score: 135.576 bits (340), Expect = 1.341e-37 Identity = 75/167 (44.91%), Postives = 101/167 (60.48%), Query Frame = 0
Query: 1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA--EKKEEA 165
MH + M R SVL+ PS G R SR + + ++ + +VEAD+ + K HL++ AL+ A PLA LSPSPL P+DL +GV PVH HIG+N +ISDYVP+ R L R LGAT++ LGLL++NL GPG+TE K++WR KK+EA
Sbjct: 2 MHRSVM---RTGSVLTKRPS-GVRHFRQSRPTKYTENKEVT-------GLAGIVEADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKQEA 157
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|298709709|emb|CBJ31514.1| (SDH4, succinate dehydrogenase subunit 4 [Ectocarpus siliculosus]) HSP 1 Score: 134.035 bits (336), Expect = 3.847e-37 Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 0
Query: 16 SSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNV---QSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164
+SL S ALL R H R + + PK + S++ AD G +GTK YH N +L P A+ SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP+++R AR +L A+ + LGLLKLNL+G GLTET K+ WR K +E
Sbjct: 3 ASLQRSSALL----RPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKE 150
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|675211469|ref|XP_008914619.1| (hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >gi|566009166|gb|ETI32077.1| hypothetical protein F443_21010 [Phytophthora parasitica P1569] >gi|567946659|gb|ETK72465.1| hypothetical protein L915_20413 [Phytophthora parasitica] >gi|567975392|gb|ETL25943.1| hypothetical protein L916_20273 [Phytophthora parasitica] >gi|568004829|gb|ETL79139.1| hypothetical protein L917_20146 [Phytophthora parasitica] >gi|568034730|gb|ETM32397.1| hypothetical protein L914_20170 [Phytophthora parasitica] >gi|568085121|gb|ETN00035.1| hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >gi|570312897|gb|ETO60845.1| hypothetical protein F444_21015 [Phytophthora parasitica P1976] >gi|570936701|gb|ETP01958.1| hypothetical protein F441_20879 [Phytophthora parasitica CJ01A1] >gi|570966984|gb|ETP30103.1| hypothetical protein F442_20820 [Phytophthora parasitica P10297]) HSP 1 Score: 133.65 bits (335), Expect = 9.334e-37 Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 0
Query: 1 MHCTAMATRRA-SSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
MH + M T A + + PSSG R S + + ++ + +VEAD+ A+ K HL++ L+ A PLA LSPSPL FP+DL LGV PVH HIG+N +ISDYVP+ R LAR LGAT++ LGLL++NL GPG+TE K++WR +KK EA
Sbjct: 2 MHRSLMRTGTALTKRTAPRPSSGVRHFRKSAPTKYTENKELT-------GLAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 163
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|970639006|gb|KUF82283.1| (hypothetical protein AM587_10007617 [Phytophthora nicotianae]) HSP 1 Score: 133.265 bits (334), Expect = 9.781e-37 Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 0
Query: 1 MHCTAMATRRA-SSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
MH + M T A + + PSSG R S + + ++ + +VEAD+ A+ K HL++ L+ A PLA LSPSPL FP+DL LGV PVH HIG+N +ISDYVP+ R LAR LGAT++ LGLL++NL GPG+TE K++WR +KK EA
Sbjct: 1 MHRSLMRTGTALTKRTAPRPSSGVRHFRKSAPTKYTENKELT-------GLAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 162
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|953499464|emb|CEG39294.1| (protein [Plasmopara halstedii]) HSP 1 Score: 131.339 bits (329), Expect = 5.818e-36 Identity = 70/165 (42.42%), Postives = 102/165 (61.82%), Query Frame = 0
Query: 1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA--EKKE 163
MH + M R+ +VLS PS R S + + ++ + ++EAD+ A+ K HL++ L+ A P+A LSPSPL FP+D+ +GV PVH HIG+N +ISDYVP++ R LAR LGAT++ +GLL++NL GPG+TE K++WR EKK+
Sbjct: 2 MHRSLM---RSGTVLSKRPSLAVRHFRKSSPTKYTENKELT-------GMAGILEADNHALSVKAMHLTSLGLMAAVPVAFVLSPSPLAFPVDMAMGVMLPVHAHIGMNNVISDYVPQSMRTLARLGWLGATSLMFVGLLRVNLEGPGITEVVKTIWRESPEKKK 156
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|301103887|ref|XP_002901029.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101367|gb|EEY59419.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 128.642 bits (322), Expect = 6.280e-35 Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 0
Query: 53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
+VEAD+ A+ K HL++ +L+ A PLA LSPSPL P+DL LG+ PVH HIG+N +ISDYVP+ R LAR LGAT++ LGLL++NL GPG+TE K++WR +KK EA
Sbjct: 48 IVEADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 163
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|695392510|ref|XP_009520355.1| (hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae] >gi|348685252|gb|EGZ25067.1| hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae]) HSP 1 Score: 128.642 bits (322), Expect = 7.554e-35 Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 0
Query: 53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
+VEAD+ + TK HL++ L+ PLA LSPSPL P+DL LGV PVH HIG+N +ISDYVP++ R LAR LGAT++ LGLL++N+ GPG+TE K++WR +KK EA
Sbjct: 48 IVEADNHVLSTKVQHLTSIGLMATVPLAFVLSPSPLALPVDLALGVILPVHAHIGMNNVISDYVPKSVRMLARLGWLGATSLMFLGLLRVNVEGPGITEVVKTVWRESPNKKKVEA 163
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|325192195|emb|CCA26648.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 115.931 bits (289), Expect = 8.856e-30 Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 0
Query: 53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEK 161
+V+AD+ TK YH ++ LL P A LSPS L+ PLD + + PVH HIG+N +ISDY+P+ +P+ R LGA + LGL++LN+ GPG+TET K+ WR K
Sbjct: 59 IVQADNAVGYTKLYHFTSVGLLAVTPCAFALSPSTLSMPLDWAMSILIPVHAHIGMNNVISDYIPKPQQPVIRLAWLGAAGLMCLGLIRLNVEGPGITETIKTFWRQPK 167
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|698799978|ref|XP_009833018.1| (hypothetical protein H257_08692 [Aphanomyces astaci] >gi|574111737|gb|ETV77231.1| hypothetical protein H257_08692 [Aphanomyces astaci]) HSP 1 Score: 110.923 bits (276), Expect = 5.584e-28 Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 30 RTNAFLHGRCISTGQPKK-------VNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164
R A R G P K +++ AD+ +K H ++ LL P A+ LSPS L P+D L V PVH HIGIN ++SDYVP+ + LAR +LGA+ VT LGL+ LN++G G+TET KSLWR +E
Sbjct: 11 RRTAATQTRGFRKGNPTKFTENKADTGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSKE 152 The following BLAST results are available for this feature:
BLAST of EWM21298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|