EWM21298.1, cds9376 (CDS) Nannochloropsis gaditana

Overview
NameEWM21298.1
Unique Namecds9376
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:191073..191214 +
Alignment locationKK037253.1:191664..192019 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21298.1
Productsuccinate dehydrogenase subunit 4
Orig transcript idgnl|cribi|Naga_100997g3.10767.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:191073..191214 +
KK037253.1supercontigKK037253.1:191664..192019 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0005740mitochondrial envelope
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007992CybS
Homology
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|585101472|gb|EWM21298.1| (succinate dehydrogenase subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 333.569 bits (854), Expect = 1.067e-115
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA 165
            MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA
Sbjct:    1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEEA 165          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|1214709220|gb|OWZ20420.1| (SDH4, succinate dehydrogenase subunit 4 [Phytophthora megakarya])

HSP 1 Score: 135.576 bits (340), Expect = 1.341e-37
Identity = 75/167 (44.91%), Postives = 101/167 (60.48%), Query Frame = 0
Query:    1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA--EKKEEA 165
            MH + M   R  SVL+  PS G    R SR   +   + ++        +  +VEAD+  +  K  HL++ AL+ A PLA  LSPSPL  P+DL +GV  PVH HIG+N +ISDYVP+  R L R   LGAT++  LGLL++NL GPG+TE  K++WR    KK+EA
Sbjct:    2 MHRSVM---RTGSVLTKRPS-GVRHFRQSRPTKYTENKEVT-------GLAGIVEADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKQEA 157          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|298709709|emb|CBJ31514.1| (SDH4, succinate dehydrogenase subunit 4 [Ectocarpus siliculosus])

HSP 1 Score: 134.035 bits (336), Expect = 3.847e-37
Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 0
Query:   16 SSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNV---QSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164
            +SL  S ALL    R     H R + +  PK  +     S++ AD G +GTK YH  N  +L   P A+  SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP+++R  AR  +L A+ +  LGLLKLNL+G GLTET K+ WR  K +E
Sbjct:    3 ASLQRSSALL----RPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKE 150          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|675211469|ref|XP_008914619.1| (hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >gi|566009166|gb|ETI32077.1| hypothetical protein F443_21010 [Phytophthora parasitica P1569] >gi|567946659|gb|ETK72465.1| hypothetical protein L915_20413 [Phytophthora parasitica] >gi|567975392|gb|ETL25943.1| hypothetical protein L916_20273 [Phytophthora parasitica] >gi|568004829|gb|ETL79139.1| hypothetical protein L917_20146 [Phytophthora parasitica] >gi|568034730|gb|ETM32397.1| hypothetical protein L914_20170 [Phytophthora parasitica] >gi|568085121|gb|ETN00035.1| hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >gi|570312897|gb|ETO60845.1| hypothetical protein F444_21015 [Phytophthora parasitica P1976] >gi|570936701|gb|ETP01958.1| hypothetical protein F441_20879 [Phytophthora parasitica CJ01A1] >gi|570966984|gb|ETP30103.1| hypothetical protein F442_20820 [Phytophthora parasitica P10297])

HSP 1 Score: 133.65 bits (335), Expect = 9.334e-37
Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 0
Query:    1 MHCTAMATRRA-SSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
            MH + M T  A +   +  PSSG    R S    +   + ++        +  +VEAD+ A+  K  HL++  L+ A PLA  LSPSPL FP+DL LGV  PVH HIG+N +ISDYVP+  R LAR   LGAT++  LGLL++NL GPG+TE  K++WR    +KK EA
Sbjct:    2 MHRSLMRTGTALTKRTAPRPSSGVRHFRKSAPTKYTENKELT-------GLAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 163          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|970639006|gb|KUF82283.1| (hypothetical protein AM587_10007617 [Phytophthora nicotianae])

HSP 1 Score: 133.265 bits (334), Expect = 9.781e-37
Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 0
Query:    1 MHCTAMATRRA-SSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
            MH + M T  A +   +  PSSG    R S    +   + ++        +  +VEAD+ A+  K  HL++  L+ A PLA  LSPSPL FP+DL LGV  PVH HIG+N +ISDYVP+  R LAR   LGAT++  LGLL++NL GPG+TE  K++WR    +KK EA
Sbjct:    1 MHRSLMRTGTALTKRTAPRPSSGVRHFRKSAPTKYTENKELT-------GLAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 162          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|953499464|emb|CEG39294.1| (protein [Plasmopara halstedii])

HSP 1 Score: 131.339 bits (329), Expect = 5.818e-36
Identity = 70/165 (42.42%), Postives = 102/165 (61.82%), Query Frame = 0
Query:    1 MHCTAMATRRASSVLSSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA--EKKE 163
            MH + M   R+ +VLS  PS      R S    +   + ++        +  ++EAD+ A+  K  HL++  L+ A P+A  LSPSPL FP+D+ +GV  PVH HIG+N +ISDYVP++ R LAR   LGAT++  +GLL++NL GPG+TE  K++WR   EKK+
Sbjct:    2 MHRSLM---RSGTVLSKRPSLAVRHFRKSSPTKYTENKELT-------GMAGILEADNHALSVKAMHLTSLGLMAAVPVAFVLSPSPLAFPVDMAMGVMLPVHAHIGMNNVISDYVPQSMRTLARLGWLGATSLMFVGLLRVNLEGPGITEVVKTIWRESPEKKK 156          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|301103887|ref|XP_002901029.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101367|gb|EEY59419.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 128.642 bits (322), Expect = 6.280e-35
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 0
Query:   53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
            +VEAD+ A+  K  HL++ +L+ A PLA  LSPSPL  P+DL LG+  PVH HIG+N +ISDYVP+  R LAR   LGAT++  LGLL++NL GPG+TE  K++WR    +KK EA
Sbjct:   48 IVEADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKKLEA 163          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|695392510|ref|XP_009520355.1| (hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae] >gi|348685252|gb|EGZ25067.1| hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae])

HSP 1 Score: 128.642 bits (322), Expect = 7.554e-35
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 0
Query:   53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRA---EKKEEA 165
            +VEAD+  + TK  HL++  L+   PLA  LSPSPL  P+DL LGV  PVH HIG+N +ISDYVP++ R LAR   LGAT++  LGLL++N+ GPG+TE  K++WR    +KK EA
Sbjct:   48 IVEADNHVLSTKVQHLTSIGLMATVPLAFVLSPSPLALPVDLALGVILPVHAHIGMNNVISDYVPKSVRMLARLGWLGATSLMFLGLLRVNVEGPGITEVVKTVWRESPNKKKVEA 163          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|325192195|emb|CCA26648.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 115.931 bits (289), Expect = 8.856e-30
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   53 LVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEK 161
            +V+AD+    TK YH ++  LL   P A  LSPS L+ PLD  + +  PVH HIG+N +ISDY+P+  +P+ R   LGA  +  LGL++LN+ GPG+TET K+ WR  K
Sbjct:   59 IVQADNAVGYTKLYHFTSVGLLAVTPCAFALSPSTLSMPLDWAMSILIPVHAHIGMNNVISDYIPKPQQPVIRLAWLGAAGLMCLGLIRLNVEGPGITETIKTFWRQPK 167          
BLAST of EWM21298.1 vs. NCBI_GenBank
Match: gi|698799978|ref|XP_009833018.1| (hypothetical protein H257_08692 [Aphanomyces astaci] >gi|574111737|gb|ETV77231.1| hypothetical protein H257_08692 [Aphanomyces astaci])

HSP 1 Score: 110.923 bits (276), Expect = 5.584e-28
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 0
Query:   30 RTNAFLHGRCISTGQPKK-------VNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164
            R  A    R    G P K           +++ AD+    +K  H ++  LL   P A+ LSPS L  P+D  L V  PVH HIGIN ++SDYVP+  + LAR  +LGA+ VT LGL+ LN++G G+TET KSLWR    +E
Sbjct:   11 RRTAATQTRGFRKGNPTKFTENKADTGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSKE 152          
The following BLAST results are available for this feature:
BLAST of EWM21298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101472|gb|EWM21298.1|1.067e-115100.00succinate dehydrogenase subunit 4 [Nannochloropsis... [more]
gi|1214709220|gb|OWZ20420.1|1.341e-3744.91SDH4, succinate dehydrogenase subunit 4 [Phytophth... [more]
gi|298709709|emb|CBJ31514.1|3.847e-3747.37SDH4, succinate dehydrogenase subunit 4 [Ectocarpu... [more]
gi|675211469|ref|XP_008914619.1|9.334e-3744.97hypothetical protein PPTG_18312 [Phytophthora para... [more]
gi|970639006|gb|KUF82283.1|9.781e-3744.97hypothetical protein AM587_10007617 [Phytophthora ... [more]
gi|953499464|emb|CEG39294.1|5.818e-3642.42protein [Plasmopara halstedii][more]
gi|301103887|ref|XP_002901029.1|6.280e-3554.31conserved hypothetical protein [Phytophthora infes... [more]
gi|695392510|ref|XP_009520355.1|7.554e-3553.45hypothetical protein PHYSODRAFT_285034 [Phytophtho... [more]
gi|325192195|emb|CCA26648.1|8.856e-3046.79conserved hypothetical protein [Albugo laibachii N... [more]
gi|698799978|ref|XP_009833018.1|5.584e-2842.25hypothetical protein H257_08692 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9406rna9406Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications