EWM21300.1, cds9372 (CDS) Nannochloropsis gaditana

Overview
NameEWM21300.1
Unique Namecds9372
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:184836..185500 -

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Properties
Property NameValue
Start range184836
Start range.
Protein idEWM21300.1
ProductARID/BRIGHT DNA-binding domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101091g1.8517.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:184836..185500 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
Homology
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BLAST of EWM21300.1 vs. NCBI_GenBank
Match: gi|585101475|gb|EWM21300.1| (ARID/BRIGHT DNA-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 427.943 bits (1099), Expect = 2.607e-151
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 
Query:    1 MFKRGTPLAGPIPRPMLAKGASRAPPPTAPTARASQSEEDLHPVRHPEKPEHADARATEKTGEEKIPTRPVRPRREKYRSGTATSAPAPGPAPPALSPPAPPPLNLYALYKAVVTKRGGWAHVASTEAWEEIAEEVGVEGGMGRRLRALYRDIMNPFEEWQATRRKAVTPAQSIASPESGAGGSEKWEGGVQGGREAGVEGGREGEGQVSSPPPGKLEGGV 221
            MFKRGTPLAGPIPRPMLAKGASRAPPPTAPTARASQSEEDLHPVRHPEKPEHADARATEKTGEEKIPTRPVRPRREKYRSGTATSAPAPGPAPPALSPPAPPPLNLYALYKAVVTKRGGWAHVASTEAWEEIAEEVGVEGGMGRRLRALYRDIMNPFEEWQATRRKAVTPAQSIASPESGAGGSEKWEGGVQGGREAGVEGGREGEGQVSSPPPGKLEGGV
Sbjct:    1 MFKRGTPLAGPIPRPMLAKGASRAPPPTAPTARASQSEEDLHPVRHPEKPEHADARATEKTGEEKIPTRPVRPRREKYRSGTATSAPAPGPAPPALSPPAPPPLNLYALYKAVVTKRGGWAHVASTEAWEEIAEEVGVEGGMGRRLRALYRDIMNPFEEWQATRRKAVTPAQSIASPESGAGGSEKWEGGVQGGREAGVEGGREGEGQVSSPPPGKLEGGV 221
The following BLAST results are available for this feature:
BLAST of EWM21300.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101475|gb|EWM21300.1|2.607e-151100.00ARID/BRIGHT DNA-binding domain protein, partial [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9402rna9402Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications