EWM21329.1, cds9344 (CDS) Nannochloropsis gaditana

Overview
NameEWM21329.1
Unique Namecds9344
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:101198..101902 -
Alignment locationKK037253.1:99227..99346 -
Alignment locationKK037253.1:98683..99052 -
Alignment locationKK037253.1:98453..98535 -
Alignment locationKK037253.1:98256..98276 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21329.1
Productflagellar outer dynein arm intermediate chain 1
Orig transcript idgnl|cribi|Naga_100374g2.8590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:101198..101902 -
KK037253.1supercontigKK037253.1:99227..99346 -
KK037253.1supercontigKK037253.1:98683..99052 -
KK037253.1supercontigKK037253.1:98453..98535 -
KK037253.1supercontigKK037253.1:98256..98276 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR011704ATPase_dyneun-rel_AAA
IPR027417P-loop_NTPase
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|585101513|gb|EWM21329.1| (flagellar outer dynein arm intermediate chain 1 [Nannochloropsis gaditana])

HSP 1 Score: 894.804 bits (2311), Expect = 0.000e+0
Identity = 432/432 (100.00%), Postives = 432/432 (100.00%), Query Frame = 0
Query:    1 MHALPESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASRAQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLIRGCGISSASSGGVRIDLGSGVHVVKRLPRNPELVPRGYLGNLSQLSEETLNHLRWMAQKDRLGQDCFLLGGPGPVRRWLALSYCELAGREVDFMTLSRDTTESDLKQRREILHANALFVDQAPVRAALHGRVLIIEGIERVERNVLPTLNNLLEDRSMALEDGRFIMKSSGYMQLLAAGHSEADLRTRGLLPCHPDFRCYSLFV 432
            MHALPESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASRAQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLIRGCGISSASSGGVRIDLGSGVHVVKRLPRNPELVPRGYLGNLSQLSEETLNHLRWMAQKDRLGQDCFLLGGPGPVRRWLALSYCELAGREVDFMTLSRDTTESDLKQRREILHANALFVDQAPVRAALHGRVLIIEGIERVERNVLPTLNNLLEDRSMALEDGRFIMKSSGYMQLLAAGHSEADLRTRGLLPCHPDFRCYSLFV
Sbjct:    1 MHALPESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASRAQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLIRGCGISSASSGGVRIDLGSGVHVVKRLPRNPELVPRGYLGNLSQLSEETLNHLRWMAQKDRLGQDCFLLGGPGPVRRWLALSYCELAGREVDFMTLSRDTTESDLKQRREILHANALFVDQAPVRAALHGRVLIIEGIERVERNVLPTLNNLLEDRSMALEDGRFIMKSSGYMQLLAAGHSEADLRTRGLLPCHPDFRCYSLFV 432          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|673033044|ref|XP_008870483.1| (hypothetical protein H310_06996 [Aphanomyces invadans] >gi|574473345|gb|ETW00348.1| hypothetical protein H310_06996 [Aphanomyces invadans])

HSP 1 Score: 298.13 bits (762), Expect = 8.038e-91
Identity = 130/224 (58.04%), Postives = 178/224 (79.46%), Query Frame = 0
Query:    6 ESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            ++K    VHS  + + L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F++E+ ++KQVTA+ WNP ++DLFA GYGSYDFL+QG GL+CC+SLKNT+ P+++F+ E+GVMCLDFHP+ P LLAVGCYDG+V+V+DVRNKVN P+Y S + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  255 KNKDDDMVHSAAMGKILRVIERMVNQNAEDEIFQDFKYWEDASDAFRDGEGSLLPLWRFSSERAKKKQVTAVCWNPCFSDLFAVGYGSYDFLKQGSGLVCCYSLKNTSHPEFIFATESGVMCLDFHPQQPALLAVGCYDGTVMVYDVRNKVNRPIYTSTIKTGKHTDPVWQVNWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 469          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|298711563|emb|CBJ32625.1| (putative, Dynein intermediate chain [Ectocarpus siliculosus])

HSP 1 Score: 295.819 bits (756), Expect = 1.646e-90
Identity = 131/217 (60.37%), Postives = 172/217 (79.26%), Query Frame = 0
Query:   13 VHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            VHS K+  +L++LER++  NAED+++ DFKY+++ SD  R  +GSLLPLW F+T++T+RKQVTAL WNP Y DLFAA YGSYDF+RQG G++CCFSLKNT+ P+Y F  E+GVMCLDFHP H  LLAVGC+DG+V+VFDVR+K N P+Y+S + TGKHTDPVW+V WQ         S    +EL F S+++DG+V +W++SKNELKMEP+MQLKL+
Sbjct:  202 VHSAKMGGALKILERMVNQNAEDEIFQDFKYWEDASDHFREGEGSLLPLWRFSTDRTKRKQVTALAWNPQYPDLFAAAYGSYDFMRQGSGMVCCFSLKNTSHPEYTFGTESGVMCLDFHPVHNSLLAVGCHDGTVMVFDVRHKANRPIYSSSIKTGKHTDPVWQVYWQ---------SDDQPKELNFFSISSDGRVASWVMSKNELKMEPVMQLKLV 409          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|698818163|ref|XP_009842110.1| (hypothetical protein H257_15640 [Aphanomyces astaci] >gi|574102938|gb|ETV68484.1| hypothetical protein H257_15640 [Aphanomyces astaci])

HSP 1 Score: 295.434 bits (755), Expect = 9.363e-90
Identity = 128/224 (57.14%), Postives = 177/224 (79.02%), Query Frame = 0
Query:    6 ESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            ++K    VHS  + + L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F++E+ ++KQVTA+ WNP ++DLFA GYGSYDFL+QG GL+CC+SLKNT+ P+++F+ E+GV CLDFHP+ P LLAVGCYDG+V+V+DVRNK+N P+Y S + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  255 KNKDDDMVHSAAMGKILRVIERMVNQNAEDEIFQDFKYWEDASDAFRDGEGSLLPLWRFSSERAKKKQVTAVCWNPCFSDLFAVGYGSYDFLKQGSGLVCCYSLKNTSHPEFIFATESGVTCLDFHPQQPALLAVGCYDGTVMVYDVRNKINRPIYTSTIKTGKHTDPVWQVNWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 469          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|676392607|ref|XP_009039581.1| (hypothetical protein AURANDRAFT_30500 [Aureococcus anophagefferens] >gi|323449857|gb|EGB05742.1| hypothetical protein AURANDRAFT_30500 [Aureococcus anophagefferens])

HSP 1 Score: 293.893 bits (751), Expect = 1.058e-89
Identity = 133/223 (59.64%), Postives = 175/223 (78.48%), Query Frame = 0
Query:    7 SKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            SK    VHS ++  +L++LER++  NA+D+++ DFKY+++ SDA R  +GSLLPLW F TE+++RKQVTAL WNP Y DLF+ GYGSYDF+RQG G++CCFSLKNT+ P+Y F+ E+GVMCL+FHPEH  LLAVGCYDG V+V+DVR+K N P+YAS + TGKHTDPVW+V+WQ   E L        +EL F S+++DG+V  W +SKNELKMEP+MQLKL+
Sbjct:  203 SKEDDMVHSQRMGNALKILERMVNQNADDEIFQDFKYWEDASDAFRDGEGSLLPLWRFHTERSKRKQVTALAWNPKYPDLFSVGYGSYDFMRQGSGMVCCFSLKNTSYPEYTFTTESGVMCLNFHPEHCSLLAVGCYDGIVMVYDVRHKGNRPIYASSIKTGKHTDPVWQVQWQI--EDLA-------KELNFFSISSDGRVANWTMSKNELKMEPVMQLKLV 416          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|669167929|ref|XP_008619493.1| (hypothetical protein SDRG_15107 [Saprolegnia diclina VS20] >gi|530728857|gb|EQC27099.1| hypothetical protein SDRG_15107 [Saprolegnia diclina VS20])

HSP 1 Score: 295.434 bits (755), Expect = 1.217e-89
Identity = 129/224 (57.59%), Postives = 177/224 (79.02%), Query Frame = 0
Query:    6 ESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            ++K    VHS  + + L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F +++ ++KQVTA+ WNP ++DLFA GYGSYDFL+QG GL+CC++LKNT+ P+++F+ E+GVMCLDFHP+ P LLAVGCYDG+VLV+DVRNKVN P+Y S + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  263 KNKDDDMVHSAAMGKILRVIERMVNQNAEDEIFQDFKYWEDASDAFREGEGSLLPLWRFASDRAKKKQVTAVCWNPCFSDLFAVGYGSYDFLKQGSGLVCCYTLKNTSHPEFIFATESGVMCLDFHPQQPALLAVGCYDGTVLVYDVRNKVNRPIYTSTIKTGKHTDPVWQVNWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 477          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|1173935774|gb|OQR86840.1| (dynein intermediate chain 2, partial [Thraustotheca clavata])

HSP 1 Score: 293.123 bits (749), Expect = 1.655e-89
Identity = 128/224 (57.14%), Postives = 176/224 (78.57%), Query Frame = 0
Query:    6 ESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            ++K    VHS  + + L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F  E+ ++KQVTA+ WNP ++DLFA GYGSY+FL+Q  GL+CC++LKNT+ P+++F+ E+GVMCLDFHP+ P LLAVGCYDG+V+V+DVRNKVN P+YAS + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  266 KNKDDDMVHSAAMGKILRVIERMVNQNAEDEIFQDFKYWEDASDAFREGEGSLLPLWRFAAERAKKKQVTAVCWNPCFSDLFAVGYGSYEFLKQSSGLVCCYTLKNTSHPEFIFATESGVMCLDFHPQQPALLAVGCYDGTVMVYDVRNKVNRPIYASTIKTGKHTDPVWQVNWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 480          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|325180294|emb|CCA14697.1| (dynein intermediate chain 2 putative [Albugo laibachii Nc14])

HSP 1 Score: 291.967 bits (746), Expect = 2.186e-88
Identity = 125/217 (57.60%), Postives = 173/217 (79.72%), Query Frame = 0
Query:   13 VHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            V+S  + ++L ++ R+L  NAED+++ DFKY+++ SD  R  +GSLLPLW F+++++R+KQVTA+ WNP ++DLFA GYGSYDFL+QG G++CC+SLKN++ P+Y F+ ++GV CLDFHP+HP LLAVGCYDGSVLV+DVRNKVN P Y S + TGKHTDPVW++ WQ  EE L       ++EL F S++ DG+V  W++SKNELKMEP+MQLK++
Sbjct:  235 VYSAGMSKTLRIVARMLNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSSDRSRKKQVTAISWNPRFSDLFAVGYGSYDFLKQGSGVVCCYSLKNSSHPEYTFTTDSGVFCLDFHPQHPALLAVGCYDGSVLVYDVRNKVNKPFYVSTIKTGKHTDPVWQITWQ--EEDL-------SKELAFYSISTDGRVANWIMSKNELKMEPMMQLKVV 442          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|813184496|ref|XP_012206420.1| (hypothetical protein SPRG_12000 [Saprolegnia parasitica CBS 223.65] >gi|641528650|gb|KDO22863.1| hypothetical protein SPRG_12000 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 291.582 bits (745), Expect = 2.666e-88
Identity = 126/208 (60.58%), Postives = 169/208 (81.25%), Query Frame = 0
Query:   22 LEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F +E+ ++KQVTA+ WNP ++DLFA GYGSYDFL+QG GL+CC++LKNT+ P+++F+ E+GVMCLDFHP+ P LLAVGCYDG+VLV+DVRNKVN P+Y S + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  264 LRVIERMVNQNAEDEIFQDFKYWEDASDAFREGEGSLLPLWRFASERAKKKQVTAVCWNPCFSDLFAVGYGSYDFLKQGSGLVCCYTLKNTSHPEFIFATESGVMCLDFHPQQPALLAVGCYDGTVLVYDVRNKVNRPIYTSTIKTGKHTDPVWQVNWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 462          
BLAST of EWM21329.1 vs. NCBI_GenBank
Match: gi|1173937407|gb|OQR88215.1| (dynein intermediate chain 2 [Achlya hypogyna])

HSP 1 Score: 289.271 bits (739), Expect = 3.170e-87
Identity = 129/224 (57.59%), Postives = 174/224 (77.68%), Query Frame = 0
Query:    6 ESKGIQTVHSDKLLRSLEMLERILTHNAEDDVYHDFKYFDETSDASR-AQGSLLPLWHFTTEKTRRKQVTALVWNPYYNDLFAAGYGSYDFLRQGGGLICCFSLKNTATPQYVFSVEAGVMCLDFHPEHPFLLAVGCYDGSVLVFDVRNKVNAPVYASKVTTGKHTDPVWKVRWQTLEEGLLGGSSSANRELCFLSVAADGQVVAWLLSKNELKMEPLMQLKLI 228
            ++K    VHS  +   L ++ER++  NAED+++ DFKY+++ SDA R  +GSLLPLW F +E+ ++KQVTA+ WNP + DLFA GYGSY+FL+QG GL+CC++LKNT+  ++ F+ E+GVMCLDFHP+ P LLAVGCYDG+VLV+DVRNKVN P+YAS + TGKHTDPVW+V WQ  EE L        +EL F S+++DG+V  W++SKNELKMEP+MQLKL+
Sbjct:  263 KAKDDDMVHSAAMGMILRVVERMVNQNAEDEIFQDFKYWEDASDAFREGEGSLLPLWRFASERAKKKQVTAVCWNPCFADLFAVGYGSYEFLKQGSGLVCCYTLKNTSHAEFTFATESGVMCLDFHPQQPALLAVGCYDGTVLVYDVRNKVNRPIYASTIKTGKHTDPVWQVYWQ--EEDLA-------KELNFFSISSDGRVANWIMSKNELKMEPVMQLKLV 477          
The following BLAST results are available for this feature:
BLAST of EWM21329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101513|gb|EWM21329.1|0.000e+0100.00flagellar outer dynein arm intermediate chain 1 [N... [more]
gi|673033044|ref|XP_008870483.1|8.038e-9158.04hypothetical protein H310_06996 [Aphanomyces invad... [more]
gi|298711563|emb|CBJ32625.1|1.646e-9060.37putative, Dynein intermediate chain [Ectocarpus si... [more]
gi|698818163|ref|XP_009842110.1|9.363e-9057.14hypothetical protein H257_15640 [Aphanomyces astac... [more]
gi|676392607|ref|XP_009039581.1|1.058e-8959.64hypothetical protein AURANDRAFT_30500 [Aureococcus... [more]
gi|669167929|ref|XP_008619493.1|1.217e-8957.59hypothetical protein SDRG_15107 [Saprolegnia dicli... [more]
gi|1173935774|gb|OQR86840.1|1.655e-8957.14dynein intermediate chain 2, partial [Thraustothec... [more]
gi|325180294|emb|CCA14697.1|2.186e-8857.60dynein intermediate chain 2 putative [Albugo laiba... [more]
gi|813184496|ref|XP_012206420.1|2.666e-8860.58hypothetical protein SPRG_12000 [Saprolegnia paras... [more]
gi|1173937407|gb|OQR88215.1|3.170e-8757.59dynein intermediate chain 2 [Achlya hypogyna][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9374rna9374Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications