EWM21344.1, cds9330 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|585101529|gb|EWM21344.1| (transcription intermediary factor 1-alpha [Nannochloropsis gaditana]) HSP 1 Score: 2481.06 bits (6429), Expect = 0.000e+0 Identity = 1240/1240 (100.00%), Postives = 1240/1240 (100.00%), Query Frame = 0
Query: 1 MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK 1240
MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK
Sbjct: 1 MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK 1240
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|1121862185|ref|XP_019471261.1| (PREDICTED: transcription intermediary factor 1-alpha-like, partial [Meleagris gallopavo]) HSP 1 Score: 63.5438 bits (153), Expect = 6.085e-7 Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 0
Query: 875 LLLCTHCPRAYHSRCLHLKHLPPDPA-IWLCAECR---LPE-----DEPT-----RALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDR 976
LL C CP+ +H C H+ L P+ W+C CR PE D+PT R L + +GL R +++L +L HE+S AF +PV VPDY +++ MDL TI R
Sbjct: 90 LLCCEKCPKVFHLSC-HVPSLMSFPSGEWICTFCRDLSKPEVEYDCDKPTHNPEKRKLEDTVGLAPIDRRKCERLLLYLYCHEMSLAFQDPVP-PTVPDYYKIIKKPMDLSTIKKR 203
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|971441551|ref|XP_015156324.1| (PREDICTED: transcription intermediary factor 1-alpha-like, partial [Gallus gallus]) HSP 1 Score: 63.5438 bits (153), Expect = 9.496e-7 Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 0
Query: 875 LLLCTHCPRAYHSRCLHLKHLPPDPA-IWLCAECR---LPE-----DEPT-----RALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDR 976
LL C CP+ +H C H+ L P+ W+C CR PE D+PT R L + +GL R +++L +L HE+S AF +PV VPDY +++ MDL TI R
Sbjct: 159 LLCCEKCPKVFHLSC-HVPSLMSFPSGEWICTFCRDLSKPEVEYDCDKPTHNPEKRKLEDTVGLAPIDRRKCERLLLYLYCHEMSLAFQDPVP-PTVPDYYKIIKKPMDLSTIKKR 272 The following BLAST results are available for this feature:
BLAST of EWM21344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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