EWM21344.1, cds9330 (CDS) Nannochloropsis gaditana

Overview
NameEWM21344.1
Unique Namecds9330
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:57110..57288 +
Alignment locationKK037253.1:57391..60934 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21344.1
Producttranscription intermediary factor 1-alpha
Orig transcript idgnl|cribi|Naga_100075g16.2878.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:57110..57288 +
KK037253.1supercontigKK037253.1:57391..60934 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
IPR001487Bromodomain
Homology
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|585101529|gb|EWM21344.1| (transcription intermediary factor 1-alpha [Nannochloropsis gaditana])

HSP 1 Score: 2481.06 bits (6429), Expect = 0.000e+0
Identity = 1240/1240 (100.00%), Postives = 1240/1240 (100.00%), Query Frame = 0
Query:    1 MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK 1240
            MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK
Sbjct:    1 MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGAADPATGGTGDGGGRGAGDGGEEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSGLSVAHSLLEDDVRRGLRGQMEEKALAKSASKTMLKHSVPEALLPPLAPSTAFPPLVLPSLDPSLLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAARQAAKLKQRAAARAVRQASRRARHAAQAVTQAAEEAGYPFPPSLQLRDYPAFLTTAMAAANALAASAAGRGGERKKRAEAGAQEGIQEISSLPPSFPPFPTNFDPVAYTSKMAAVVVEVGGHGGERGGGMGLASALRGLASIDAAASAKTLNRKAGEQEGGRNGGERGRQAGREDEDGGGARAGSRKRNKLDFSPMGDSMRVRVRVRKRLAMPSWTSPLMMVRLRRQMGGEGGKEGGRGDGGRWECLAPAPEEEEEAARKRKWFGPSLVLPERALYAFEMVTPSEMAAAGLGVLPVVPEGKEGKDGAGAPGGGTGPDWGAKAVQIKERTPATGFSSGARSPVKGLIGEGVESKGHLPPSLAAGIGKAENFTAPAQSSRKRKHPSAADGKGLGTASSSTSKAAGPGPPLASRPHSALPLPATAADLKAEPGETANCGPGHVNVEVCCICQEETEEEEAPGREGVGVGSALAKEGSRVESGRKKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGLLEKTNRGASLEGGEEGEKKGGLYEGTKSGTQRSQKARAEKGEGSNGKKGKVEDIELQHQRDSPSFVAKQARHGDWSESRAKKRSVRAADTRGPKQRGK 1240          
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|1121862185|ref|XP_019471261.1| (PREDICTED: transcription intermediary factor 1-alpha-like, partial [Meleagris gallopavo])

HSP 1 Score: 63.5438 bits (153), Expect = 6.085e-7
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 0
Query:  875 LLLCTHCPRAYHSRCLHLKHLPPDPA-IWLCAECR---LPE-----DEPT-----RALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDR 976
            LL C  CP+ +H  C H+  L   P+  W+C  CR    PE     D+PT     R L + +GL     R  +++L +L  HE+S AF +PV    VPDY   +++ MDL TI  R
Sbjct:   90 LLCCEKCPKVFHLSC-HVPSLMSFPSGEWICTFCRDLSKPEVEYDCDKPTHNPEKRKLEDTVGLAPIDRRKCERLLLYLYCHEMSLAFQDPVP-PTVPDYYKIIKKPMDLSTIKKR 203          
BLAST of EWM21344.1 vs. NCBI_GenBank
Match: gi|971441551|ref|XP_015156324.1| (PREDICTED: transcription intermediary factor 1-alpha-like, partial [Gallus gallus])

HSP 1 Score: 63.5438 bits (153), Expect = 9.496e-7
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 0
Query:  875 LLLCTHCPRAYHSRCLHLKHLPPDPA-IWLCAECR---LPE-----DEPT-----RALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDR 976
            LL C  CP+ +H  C H+  L   P+  W+C  CR    PE     D+PT     R L + +GL     R  +++L +L  HE+S AF +PV    VPDY   +++ MDL TI  R
Sbjct:  159 LLCCEKCPKVFHLSC-HVPSLMSFPSGEWICTFCRDLSKPEVEYDCDKPTHNPEKRKLEDTVGLAPIDRRKCERLLLYLYCHEMSLAFQDPVP-PTVPDYYKIIKKPMDLSTIKKR 272          
The following BLAST results are available for this feature:
BLAST of EWM21344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101529|gb|EWM21344.1|0.000e+0100.00transcription intermediary factor 1-alpha [Nannoch... [more]
gi|1121862185|ref|XP_019471261.1|6.085e-737.07PREDICTED: transcription intermediary factor 1-alp... [more]
gi|971441551|ref|XP_015156324.1|9.496e-737.07PREDICTED: transcription intermediary factor 1-alp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9360rna9360Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications