EWM21358.1, cds9314 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|585101544|gb|EWM21358.1| (dna mismatch repair protein msh2 [Nannochloropsis gaditana]) HSP 1 Score: 1959.11 bits (5074), Expect = 0.000e+0 Identity = 978/978 (100.00%), Postives = 978/978 (100.00%), Query Frame = 0
Query: 1 MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK 978
MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK
Sbjct: 1 MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK 978
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|299117067|emb|CBN73838.1| (MutS protein homolog 2B [Ectocarpus siliculosus]) HSP 1 Score: 404.06 bits (1037), Expect = 3.140e-122 Identity = 253/576 (43.92%), Postives = 333/576 (57.81%), Query Frame = 0
Query: 341 WLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTL----GRLSDALSSLADATCPALDA---LLR----LPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAG 905
WLQ PL+ I R ++ + S+ +L+ L + G + RG PDLER QRFL P RV L LL VY A + L G L DA DA A ++ L R PL + V+ L++FQ+L EEV+D+D L + G++V V+PSF L L ++ + M KD+ +K R+KL+++AVH HHLRVTKKDQ + + A+L TLSVQK G +FTT L+ + R + +Y VQ +V QA++V +Y + +++A +DV LSL + +W P LL T + I LRHP VEAA A FIPND+ L + S +++VTGPN GKST+IRSVGIA LLAQ+G+ VPA T+ID++ RVGASDNQL+GVSTFMAEMLET A+L A +SLVIVDELGRGTST DGFG+AWAVA+RL +S A+ LFATHFHEL +EQ VQNLH +AE A AS+ L + Y+V G CDRSFG+HVAR+A FP +V EA + L+ G
Sbjct: 349 WLQHPLVDVQEITSRHCMIETICSEKALIDTLRKGSG---------MLRGIPDLERIMQRFLRKPPQ--------RVTLATLLGVYRAVMRLSSIVGALDDAFGD--DAAGDAAESGPTLFRERIVSPLQKAVSNLSKFQSLCEEVIDLDHLRESDGKQVRVRPSFHAELQRLGQELAGTSEEMAGVL----KDVETASKAPAGRIKLEFNAVHSHHLRVTKKDQAFVGKCKAAL---TLSVQKAGVIFTTDRLRSVDARATRLKEQYEDVQSKIVLQAITVAGTYTPVLSSAAKIVAKLDVLLSLCVCVHLWDWVRPRLLPVGSQT---IDIKGLRHPSVEAA-RGAGLFIPNDIKLGSNSR----------MTIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAEEAVMTVIDRICARVGASDNQLRGVSTFMAEMLETTAILRKANRQSLVIVDELGRGTSTCDGFGIAWAVADRLISSGAL---CLFATHFHELTAIEQEKGGKGVQNLHVTAE------ADTASNKLTMLYKVTQGSCDRSFGIHVARIANFPGHVVSEAETLAQCLENG 875 HSP 2 Score: 73.9442 bits (180), Expect = 1.192e-9 Identity = 69/201 (34.33%), Postives = 102/201 (50.75%), Query Frame = 0
Query: 34 FAAFFHSLPPPSNATGTLSPSQKCFRFFARD-QGNFFSSHGPEARDLAAR--FYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRA-LEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGE--LEDAGDPKTLESLVVQL 228
FA FF L + G L RFF R + +F++HG +A DL +R F +T V GGL S++IS K+F+S V P+L+A +E+WEQ G + W + PG+ A + D+ SG+G + +++A+S GT V M+ G GVA AN +FR + L + L D LE +VVQ+
Sbjct: 5 FATFFRRL----ESIGGL------VRFFRRSKEWVYFTAHGLDA-DLVSREAFKNTSVVSFQSGGLPSITISVKVFSSLV-PALLAKNFRIEVWEQLGGSST----WTRRLSASPGNVEAIMADIA---SGEGEGRQDEDAAS--GTAVMMSAYANAAGG-----VGVAYANPAFRIVGLLDCALSD------LEGVVVQV 173
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|589947756|ref|XP_006986547.1| (PREDICTED: DNA mismatch repair protein Msh2 [Peromyscus maniculatus bairdii]) HSP 1 Score: 385.571 bits (989), Expect = 4.693e-115 Identity = 289/952 (30.36%), Postives = 442/952 (46.43%), Query Frame = 0
Query: 26 LGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
L G GF FF +P + T R F D+G+F+++HG +A A + TQ V++ G L S+ +S+ F S V L+ VE+++ AG + +++ +W++A PG+ ED++ + S+ +G G+ M+++ + G G V + R L L E E +GD L +V V + KRA S + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L A + ++W++ PL+ I +R +V D L L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M++L ++M+ T A++ G DA K++KLD SA ++ RVT K++R L+ + T+ +QK+G FT L L+ + ++ EY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ GT R + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA++E +A C +FATHFHEL + +P V NLH +A T + L + Y+V+ G CD+SFG+HVA LA FP ++ R+ A +E Q G
Sbjct: 11 LEGPAEAGFVRFFEGMPEKPSTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNKAGSKATKENDWYLAFKASPGNLAQFEDILFG---------NNDMSASVGVVGIKMSMVDGQRQVGVGYVDSIQ------RKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETSGDMGKLRQVVQRGGVLITERKRADFSTKDICQDLNRLLKGKKGEQTNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDMAAVRAL--------NLFQGSVEDTTGSQSLAALLNKCKTAQGQRLV-------------NQWIKQPLMDKNRIEERLDLVEAFVEDSELRQTLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGVNQLPSVIQALKKYQGRHQALLTAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDSLEKKMQATLISAAR---GLGLDAGKQIKLDSSAQFGYYFRVTCKEERVLRNNK---NFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEK--GTGR-IILKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSILDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALASQIPT--VNNLHVTALT--------SEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECARQKALELEEFQNIG 858
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|305855210|ref|NP_001182286.1| (DNA mismatch repair protein Msh2 [Sus scrofa] >gi|285818416|gb|ADC38881.1| MutS-like protein 2 [Sus scrofa]) HSP 1 Score: 384.415 bits (986), Expect = 1.409e-114 Identity = 294/982 (29.94%), Postives = 453/982 (46.13%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELED--------------------------AGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGA------------GGDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAE--KKRAWEDEEEGRLKRARAAARARQ 944
GF FF +P T R F D+G+F+++HG +A A + TQ VV+ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ + S+ IG GV M+ + + G G V + R L L E D AGD L ++ + + KRA S + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L + PQ G R ++W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + A+ L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + ++ EY + Q A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA+ E +A C +FATHFHEL + +P V NLH +A T L + Y+V+ G CD+SFG+HVA LA FP ++ A+ +AL+ + + + Q+ E KR + + E+G ++ +Q
Sbjct: 18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVVKFMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKEHDWYLAFKASPGNLSQFEDILFG---------NNDMSAPIGVVGVKMSTVDGQRQVGVGYVDSIQ------RKLGLCEFPDNDQLSNLEALLIQIGPKECVLPGGDTAGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLADDSNFGQFELTTFDFSQYMKLDMAAVRAL--------NLFQGSVEDTAGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQAMEKYEGQHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIPEYIATKIGAFC--MFATHFHELTALANQIPA--VNNLHVAALT--------TEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIE--CAKQKALELEEFQNIGAPQEHDEMEPAAKRCYLEREQGEKIIQEFVSKVKQ 893
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|532077526|ref|XP_005324544.1| (DNA mismatch repair protein Msh2 isoform X1 [Ictidomys tridecemlineatus]) HSP 1 Score: 382.104 bits (980), Expect = 8.712e-114 Identity = 289/946 (30.55%), Postives = 444/946 (46.93%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGGL 907
GF FF S+P T R F D+G+F+++HG +A A + TQ V++ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ + AS IG GV M+ + G+ V GV +T + L L E E AGD L ++ + + KRA S + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L + PQ G R ++W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + ++AEY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE + FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA+++ +A C +FATHFHEL + + +P V NLH +A T + Y+V+ G CD+SFG+HVA LA FP ++ ++ A +E Q G+
Sbjct: 18 GFVRFFQSMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEDILFGNNDMSAS---------IGVVGVKMSTV-----DGQRQV-GVGYVDTIQKKLGLCEFPDNDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAIIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKKRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYGGKHQVLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLSSLNEEYTKNKAEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIILKASRHACVE--IQDEVAFIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFC--MFATHFHELTALAKQIPT--VNNLHVTALTTEETLT--------MLYQVKKGACDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGV 859
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|507958393|ref|XP_004686280.1| (PREDICTED: DNA mismatch repair protein Msh2 [Condylura cristata]) HSP 1 Score: 380.948 bits (977), Expect = 2.715e-113 Identity = 295/957 (30.83%), Postives = 453/957 (47.34%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLGLLPEGSG--EIGGAG-GDGEDGWEVS----LLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASS---------TQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEG 931
GF FF +P T R F D+G+F+++HG +A A + TQ VV+ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ E+++ + AS IG G+ M+ + G+ V GV +T+ R L L E E +GD L ++ + + KRA S + L L +G EI A + E+ VS ++K +L D+ + + + G +L R R +GS+ +S + PQ G R ++W++ PL+ I +R ++V D L L E + R PDL R A++F R L+D +Y L + AL L A+ P + + ++FQ ++E +D+++ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + +++EY + Q A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G ++ + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET A+L +AT SL+I+DELGRGTST+DGFGLAWA++E +A C +FATHFHEL + +P V NLH + A L + Y+V+ G CD+SFG+HVA LA FP ++ ++ A +E Q G S+ KR + + EEG
Sbjct: 18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEEILFGNNDTSAS---------IGVVGIKMSTV-----DGQRQV-GVGYVDTTQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETSGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEEINSAVLPEMENQVAVSSLSAVIKFLDILSDDSNFGQFEL--TTFDFGQYL-RLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYEGQHQALLLAIFVTPFIDLRSDFSKFQEMIETTLDMEQ-VENH--EFLVKPSFDPNLSELRELMDDLEKKMQSTLVSAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKSEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEKGKG---KITLKASRHACVEVQDEVA--FIPNDVHFEKGKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAAILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGICDQSFGIHVAELANFPRHVIECAKQKALELEEFQNFG----ESQYDEMEPAAKRCYLEREEG 879
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|1123987293|ref|XP_019604208.1| (PREDICTED: DNA mismatch repair protein Msh2 [Rhinolophus sinicus]) HSP 1 Score: 380.178 bits (975), Expect = 4.330e-113 Identity = 298/994 (29.98%), Postives = 460/994 (46.28%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVA--------NTSFRTL------------ALGELEDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAE--KKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVAL 962
GF FF +P T R F D+G+F+++H +A A + TQ VV+ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ S + S+ IG GV M+ + + G G V V N F TL L E AGD L ++ + + KR S + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L + PQ G R ++W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T ++DL D+ K++KLD ++ ++ RVT K+++ L+ + T+ +QK+G FT +L L+ + ++ EY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA++E +A C +FATHFHEL + +P V NLH +A T + Y+V+ G CD+SFG+HVA LA FP+ ++ A+ +AL+ + + Q+ E KR + + EEG + +Q E S ED+ L
Sbjct: 18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHREDALLAAREVFKTQGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEDILFGNS---------DLSTSIGVVGVKMSTVDGQRQVGVGYVDSVQRKLGLCEFPDNDQFSTLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKRTDFSTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIKYLELLSDDSNFGQFEMTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPHVIGALEKYEGKHQTLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISTARDL---GLDSGKQIKLDSNSQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSTLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIKLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVTALTTEETLT--------MLYQVKKGVCDQSFGIHVAELANFPKHVIE--CAKQKALELEEFQNIGESQENDEMEPAAKRCYLEREEGEKIIQEFLCKVKQMPLTEM-----SEEDITL 906
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|348574690|ref|XP_003473123.1| (PREDICTED: DNA mismatch repair protein Msh2 [Cavia porcellus]) HSP 1 Score: 375.555 bits (963), Expect = 2.701e-111 Identity = 285/944 (30.19%), Postives = 443/944 (46.93%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
GF FF ++P T R F D+G+F+++HG +A A + TQ V++ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ + A+S+ G+ M+ + G+ V GV +++ R L L E E AGD L ++ + + KRA S + L +LPE ++ + D G +E++ ++ D AA + + L+ G G + L A L + PQ G R +W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + ++ EY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA+++ +A C +FATHFHEL + +P V NLH + A + L + Y+V+ G CD+SFG+HVA LA FP +V ++ A +E Q+ G
Sbjct: 18 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNKAGNKASKENDWYLAFKASPGNLSQFEDILFGNNDM--------AASIGVVGIKMSAV-----DGQRQV-GVGYVDSAQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRAGILITERKRAEFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLDLLSDDSNFGQFELTTFDFSQYMKLDIAAVKAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VHQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYEGRHQALLLAVFAAPLVDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQSLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIILKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATRIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTAETLTMLYQVKKGVCDQSFGIHVAELANFPRHVVECAKQKALELEEFQSIG 858
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|671015752|ref|XP_008698664.1| (PREDICTED: DNA mismatch repair protein Msh2 [Ursus maritimus]) HSP 1 Score: 375.17 bits (962), Expect = 3.813e-111 Identity = 288/945 (30.48%), Postives = 439/945 (46.46%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
GF FF ++P T R F D+G+F+++H +A A + TQ VV+ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ + S+ IG GV M+ + G+ V GV ++ R L L E E AGD L ++ + + KRA + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L + PQ G R ++W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + ++ EY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA++E +A C +FATHFHEL + +P V NLH + A L + Y+V+ G CD+SFG+HVA LA FP ++ R+ A +E Q G
Sbjct: 22 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHHEDALLAAREVFKTQGVVKYIGPAGTKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGSKASKENDWYLAFKASPGNLSQFEDILFG---------NNDMSASIGVVGVKMSTV-----DGQRQV-GVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFFTKDIYQDLNRLLKGKKGEPVNSAVLPEMENQVAASSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIRALEKYEGKHQSLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLVSAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECARQKALELEEFQYIG 862
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|73969550|ref|XP_538482.2| (PREDICTED: DNA mismatch repair protein Msh2 isoform X1 [Canis lupus familiaris]) HSP 1 Score: 374.4 bits (960), Expect = 7.506e-111 Identity = 292/971 (30.07%), Postives = 450/971 (46.34%), Query Frame = 0
Query: 33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQ-AGGLRALTSEQQARLAEKKRAWEDEEEG 931
GF FF ++P T R F D+G+F+++H +A A + TQ V++ G L S+ +S+ F S V L+ VE+++ AG + S++ +W++A PG+ ED++ + S+ IG GV M+ + G+ V GV ++ R L L E E AGD L ++ + + KRA + L +LPE ++ + D G +E++ ++ D AA R + L+ G G + L A L + PQ G R ++W++ PL+ I +R ++V D L +L E + R PDL R A++F R L+D +Y L + AL L A+ PL + + ++FQ ++E +D+D+ V H E VKPSFDP L LR+ M+ L ++M+ T A++DL D K++KLD SA ++ RVT K+++ L+ + T+ +QK+G FT L L+ + ++ EY + Q+A+V + V++ YV+ MQ +LA +D +S A V+N + + P +L+ G + + RH VE A FIPNDVH + ++TGPN GGKSTYIR G+ VL+AQ+G VP + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT SL+I+DELGRGTST+DGFGLAWA++E +A C +FATHFHEL + +P V NLH + A L + Y+V+ G CD+SFG+HVA LA FP ++ ++ A +E Q GG + + A KR + + E+G
Sbjct: 18 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHHEDALLAAREVFKTQGVIKYLGPAGTKTLESVVLSKMNFESFVKDLLLIRQYRVEVYKNRAGSKASKENDWYLAFKASPGNLSQFEDILFG---------NNDMSTSIGVVGVKMSTV-----DGQRQV-GVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFFTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIRALEKYEGKHQGLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGGSQGYDEMEPA----AKRCYLEREQG 880 The following BLAST results are available for this feature:
BLAST of EWM21358.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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