EWM21358.1, cds9314 (CDS) Nannochloropsis gaditana

Overview
NameEWM21358.1
Unique Namecds9314
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:19480..20065 -
Alignment locationKK037253.1:19271..19365 -
Alignment locationKK037253.1:18476..18648 -
Alignment locationKK037253.1:17915..18079 -
Alignment locationKK037253.1:17643..17789 -
Alignment locationKK037253.1:17420..17550 -
Alignment locationKK037253.1:17200..17324 -
Alignment locationKK037253.1:17057..17098 -
Alignment locationKK037253.1:16794..16948 -
Alignment locationKK037253.1:16620..16701 -
Alignment locationKK037253.1:15252..16487 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21358.1
Productdna mismatch repair protein msh2
Orig transcript idgnl|cribi|Naga_100357g5.4702.mrna
GeneMSH2B
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:19480..20065 -
KK037253.1supercontigKK037253.1:19271..19365 -
KK037253.1supercontigKK037253.1:18476..18648 -
KK037253.1supercontigKK037253.1:17915..18079 -
KK037253.1supercontigKK037253.1:17643..17789 -
KK037253.1supercontigKK037253.1:17420..17550 -
KK037253.1supercontigKK037253.1:17200..17324 -
KK037253.1supercontigKK037253.1:17057..17098 -
KK037253.1supercontigKK037253.1:16794..16948 -
KK037253.1supercontigKK037253.1:16620..16701 -
KK037253.1supercontigKK037253.1:15252..16487 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0007275multicellular organism development
GO:0006298mismatch repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0030983mismatched DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR007861DNA_mismatch_repair_MutS_clamp
IPR000432DNA_mismatch_repair_MutS_C
IPR007696DNA_mismatch_repair_MutS_core
Homology
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|585101544|gb|EWM21358.1| (dna mismatch repair protein msh2 [Nannochloropsis gaditana])

HSP 1 Score: 1959.11 bits (5074), Expect = 0.000e+0
Identity = 978/978 (100.00%), Postives = 978/978 (100.00%), Query Frame = 0
Query:    1 MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK 978
            MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK
Sbjct:    1 MGPYFHFRRPQKPNTSTPRSTRVGTLGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELEDAGDPKTLESLVVQLAPLKRALLSADALLSHLGLLPEGSGEIGGAGGDGEDGWEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVALGEALEGVVALVEANVK 978          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|299117067|emb|CBN73838.1| (MutS protein homolog 2B [Ectocarpus siliculosus])

HSP 1 Score: 404.06 bits (1037), Expect = 3.140e-122
Identity = 253/576 (43.92%), Postives = 333/576 (57.81%), Query Frame = 0
Query:  341 WLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTL----GRLSDALSSLADATCPALDA---LLR----LPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAG 905
            WLQ PL+    I  R  ++  + S+ +L+  L +  G         + RG PDLER  QRFL  P          RV L  LL VY A + L    G L DA     DA   A ++   L R     PL + V+ L++FQ+L EEV+D+D L  + G++V V+PSF   L  L  ++   +  M        KD+   +K    R+KL+++AVH HHLRVTKKDQ  + +  A+L   TLSVQK G +FTT  L+ +  R    + +Y  VQ  +V QA++V  +Y   +    +++A +DV LSL    +  +W  P LL     T   + I  LRHP VEAA   A  FIPND+ L + S           +++VTGPN  GKST+IRSVGIA LLAQ+G+ VPA     T+ID++  RVGASDNQL+GVSTFMAEMLET A+L  A  +SLVIVDELGRGTST DGFG+AWAVA+RL +S A+    LFATHFHEL  +EQ      VQNLH +AE      A  AS+ L + Y+V  G CDRSFG+HVAR+A FP  +V EA    + L+ G
Sbjct:  349 WLQHPLVDVQEITSRHCMIETICSEKALIDTLRKGSG---------MLRGIPDLERIMQRFLRKPPQ--------RVTLATLLGVYRAVMRLSSIVGALDDAFGD--DAAGDAAESGPTLFRERIVSPLQKAVSNLSKFQSLCEEVIDLDHLRESDGKQVRVRPSFHAELQRLGQELAGTSEEMAGVL----KDVETASKAPAGRIKLEFNAVHSHHLRVTKKDQAFVGKCKAAL---TLSVQKAGVIFTTDRLRSVDARATRLKEQYEDVQSKIVLQAITVAGTYTPVLSSAAKIVAKLDVLLSLCVCVHLWDWVRPRLLPVGSQT---IDIKGLRHPSVEAA-RGAGLFIPNDIKLGSNSR----------MTIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAEEAVMTVIDRICARVGASDNQLRGVSTFMAEMLETTAILRKANRQSLVIVDELGRGTSTCDGFGIAWAVADRLISSGAL---CLFATHFHELTAIEQEKGGKGVQNLHVTAE------ADTASNKLTMLYKVTQGSCDRSFGIHVARIANFPGHVVSEAETLAQCLENG 875          

HSP 2 Score: 73.9442 bits (180), Expect = 1.192e-9
Identity = 69/201 (34.33%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   34 FAAFFHSLPPPSNATGTLSPSQKCFRFFARD-QGNFFSSHGPEARDLAAR--FYSTQTVVRSQGGLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAGEGSEQEEWFVARAGRPGDTRA-LEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGE--LEDAGDPKTLESLVVQL 228
            FA FF  L     + G L       RFF R  +  +F++HG +A DL +R  F +T  V    GGL S++IS K+F+S V P+L+A    +E+WEQ  G  +    W    +  PG+  A + D+    SG+G  + +++A+S  GT V M+      G       GVA AN +FR + L +  L D      LE +VVQ+
Sbjct:    5 FATFFRRL----ESIGGL------VRFFRRSKEWVYFTAHGLDA-DLVSREAFKNTSVVSFQSGGLPSITISVKVFSSLV-PALLAKNFRIEVWEQLGGSST----WTRRLSASPGNVEAIMADIA---SGEGEGRQDEDAAS--GTAVMMSAYANAAGG-----VGVAYANPAFRIVGLLDCALSD------LEGVVVQV 173          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|589947756|ref|XP_006986547.1| (PREDICTED: DNA mismatch repair protein Msh2 [Peromyscus maniculatus bairdii])

HSP 1 Score: 385.571 bits (989), Expect = 4.693e-115
Identity = 289/952 (30.36%), Postives = 442/952 (46.43%), Query Frame = 0
Query:   26 LGGSTPRGFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
            L G    GF  FF  +P   + T          R F  D+G+F+++HG +A   A   + TQ V++  G      L S+ +S+  F S V   L+     VE+++  AG + +++ +W++A    PG+    ED++             + S+ +G  G+ M+++  +   G G V  +       R L L E                           E +GD   L  +V    V +   KRA  S   +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L     A   +               ++W++ PL+    I +R  +V     D  L   L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M++L ++M+ T   A++   G   DA K++KLD SA   ++ RVT K++R L+ +       T+ +QK+G  FT   L  L+  +  ++ EY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   GT R + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA++E +A      C  +FATHFHEL  +   +P   V NLH +A T        +   L + Y+V+ G CD+SFG+HVA LA FP  ++   R+ A  +E  Q  G
Sbjct:   11 LEGPAEAGFVRFFEGMPEKPSTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNKAGSKATKENDWYLAFKASPGNLAQFEDILFG---------NNDMSASVGVVGIKMSMVDGQRQVGVGYVDSIQ------RKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETSGDMGKLRQVVQRGGVLITERKRADFSTKDICQDLNRLLKGKKGEQTNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDMAAVRAL--------NLFQGSVEDTTGSQSLAALLNKCKTAQGQRLV-------------NQWIKQPLMDKNRIEERLDLVEAFVEDSELRQTLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGVNQLPSVIQALKKYQGRHQALLTAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDSLEKKMQATLISAAR---GLGLDAGKQIKLDSSAQFGYYFRVTCKEERVLRNNK---NFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEK--GTGR-IILKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSILDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALASQIPT--VNNLHVTALT--------SEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECARQKALELEEFQNIG 858          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|305855210|ref|NP_001182286.1| (DNA mismatch repair protein Msh2 [Sus scrofa] >gi|285818416|gb|ADC38881.1| MutS-like protein 2 [Sus scrofa])

HSP 1 Score: 384.415 bits (986), Expect = 1.409e-114
Identity = 294/982 (29.94%), Postives = 453/982 (46.13%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGELED--------------------------AGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGA------------GGDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAE--KKRAWEDEEEGRLKRARAAARARQ 944
            GF  FF  +P     T          R F  D+G+F+++HG +A   A   + TQ VV+  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++             + S+ IG  GV M+ +  +   G G V  +       R L L E  D                          AGD   L  ++    + +   KRA  S   +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L         +   PQ   G R    ++W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  A+          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  ++ EY + Q A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA+ E +A      C  +FATHFHEL  +   +P   V NLH +A T            L + Y+V+ G CD+SFG+HVA LA FP  ++    A+ +AL+    + + + Q+    E   KR + + E+G        ++ +Q
Sbjct:   18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVVKFMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKEHDWYLAFKASPGNLSQFEDILFG---------NNDMSAPIGVVGVKMSTVDGQRQVGVGYVDSIQ------RKLGLCEFPDNDQLSNLEALLIQIGPKECVLPGGDTAGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLADDSNFGQFELTTFDFSQYMKLDMAAVRAL--------NLFQGSVEDTAGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQAMEKYEGQHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIPEYIATKIGAFC--MFATHFHELTALANQIPA--VNNLHVAALT--------TEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIE--CAKQKALELEEFQNIGAPQEHDEMEPAAKRCYLEREQGEKIIQEFVSKVKQ 893          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|532077526|ref|XP_005324544.1| (DNA mismatch repair protein Msh2 isoform X1 [Ictidomys tridecemlineatus])

HSP 1 Score: 382.104 bits (980), Expect = 8.712e-114
Identity = 289/946 (30.55%), Postives = 444/946 (46.93%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGGL 907
            GF  FF S+P     T          R F  D+G+F+++HG +A   A   + TQ V++  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++   +   AS         IG  GV M+ +      G+  V GV   +T  + L L E                           E AGD   L  ++    + +   KRA  S   +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L         +   PQ   G R    ++W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  ++AEY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE  +     FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA+++ +A      C  +FATHFHEL  + + +P   V NLH +A T              + Y+V+ G CD+SFG+HVA LA FP  ++   ++ A  +E  Q  G+
Sbjct:   18 GFVRFFQSMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEDILFGNNDMSAS---------IGVVGVKMSTV-----DGQRQV-GVGYVDTIQKKLGLCEFPDNDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAIIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKKRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYGGKHQVLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLSSLNEEYTKNKAEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIILKASRHACVE--IQDEVAFIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFC--MFATHFHELTALAKQIPT--VNNLHVTALTTEETLT--------MLYQVKKGACDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGV 859          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|507958393|ref|XP_004686280.1| (PREDICTED: DNA mismatch repair protein Msh2 [Condylura cristata])

HSP 1 Score: 380.948 bits (977), Expect = 2.715e-113
Identity = 295/957 (30.83%), Postives = 453/957 (47.34%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLGLLPEGSG--EIGGAG-GDGEDGWEVS----LLKPEHLLQYDAAAARVVVGGRGCEGGLWLGRRRGGGRRLFARLRGSLHASS---------TQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGGLRALTSEQQARLAEKKRAWEDEEEG 931
            GF  FF  +P     T          R F  D+G+F+++HG +A   A   + TQ VV+  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    E+++   +   AS         IG  G+ M+ +      G+  V GV   +T+ R L L E                           E +GD   L  ++    + +   KRA  S   +   L  L +G    EI  A   + E+   VS    ++K   +L  D+   +  +     + G +L R      R     +GS+  +S          +   PQ   G R    ++W++ PL+    I +R ++V     D  L   L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   P   + +  ++FQ ++E  +D+++ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  +++EY + Q A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G   ++ +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET A+L +AT  SL+I+DELGRGTST+DGFGLAWA++E +A      C  +FATHFHEL  +   +P   V NLH +        A      L + Y+V+ G CD+SFG+HVA LA FP  ++   ++ A  +E  Q  G     S+        KR + + EEG
Sbjct:   18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEEILFGNNDTSAS---------IGVVGIKMSTV-----DGQRQV-GVGYVDTTQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETSGDMGKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEEINSAVLPEMENQVAVSSLSAVIKFLDILSDDSNFGQFEL--TTFDFGQYL-RLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYEGQHQALLLAIFVTPFIDLRSDFSKFQEMIETTLDMEQ-VENH--EFLVKPSFDPNLSELRELMDDLEKKMQSTLVSAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKSEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEKGKG---KITLKASRHACVEVQDEVA--FIPNDVHFEKGKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAAILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGICDQSFGIHVAELANFPRHVIECAKQKALELEEFQNFG----ESQYDEMEPAAKRCYLEREEG 879          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|1123987293|ref|XP_019604208.1| (PREDICTED: DNA mismatch repair protein Msh2 [Rhinolophus sinicus])

HSP 1 Score: 380.178 bits (975), Expect = 4.330e-113
Identity = 298/994 (29.98%), Postives = 460/994 (46.28%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVA--------NTSFRTL------------ALGELEDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIVREAAARVEALQAGGLRALTSEQQARLAE--KKRAWEDEEEGRLKRARAAARARQRKAVEALAALPSLEDVAL 962
            GF  FF  +P     T          R F  D+G+F+++H  +A   A   + TQ VV+  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++   S         + S+ IG  GV M+ +  +   G G V  V           N  F TL             L   E AGD   L  ++    + +   KR   S   +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L         +   PQ   G R    ++W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T    ++DL     D+ K++KLD ++   ++ RVT K+++ L+ +       T+ +QK+G  FT  +L  L+  +  ++ EY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA++E +A      C  +FATHFHEL  +   +P   V NLH +A T              + Y+V+ G CD+SFG+HVA LA FP+ ++    A+ +AL+    + +   Q+    E   KR + + EEG         + +Q    E      S ED+ L
Sbjct:   18 GFVRFFQGMPEKPTTT---------VRLF--DRGDFYTAHREDALLAAREVFKTQGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEDILFGNS---------DLSTSIGVVGVKMSTVDGQRQVGVGYVDSVQRKLGLCEFPDNDQFSTLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKRTDFSTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIKYLELLSDDSNFGQFEMTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPHVIGALEKYEGKHQTLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISTARDL---GLDSGKQIKLDSNSQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSTLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIKLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVTALTTEETLT--------MLYQVKKGVCDQSFGIHVAELANFPKHVIE--CAKQKALELEEFQNIGESQENDEMEPAAKRCYLEREEGEKIIQEFLCKVKQMPLTEM-----SEEDITL 906          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|348574690|ref|XP_003473123.1| (PREDICTED: DNA mismatch repair protein Msh2 [Cavia porcellus])

HSP 1 Score: 375.555 bits (963), Expect = 2.701e-111
Identity = 285/944 (30.19%), Postives = 443/944 (46.93%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGTGVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
            GF  FF ++P     T          R F  D+G+F+++HG +A   A   + TQ V++  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++   +          A+S+   G+ M+ +      G+  V GV   +++ R L L E                           E AGD   L  ++    + +   KRA  S   +   L               +LPE   ++  +              D   G +E++       ++ D AA + +         L+ G      G + L A L         +   PQ   G R     +W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  ++ EY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA+++ +A      C  +FATHFHEL  +   +P   V NLH +        A   +  L + Y+V+ G CD+SFG+HVA LA FP  +V   ++ A  +E  Q+ G
Sbjct:   18 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHGEDALLAAREVFKTQGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNKAGNKASKENDWYLAFKASPGNLSQFEDILFGNNDM--------AASIGVVGIKMSAV-----DGQRQV-GVGYVDSAQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRAGILITERKRAEFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLDLLSDDSNFGQFELTTFDFSQYMKLDIAAVKAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VHQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIQALEKYEGRHQALLLAVFAAPLVDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREVMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQSLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RIILKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATRIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTAETLTMLYQVKKGVCDQSFGIHVAELANFPRHVVECAKQKALELEEFQSIG 858          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|671015752|ref|XP_008698664.1| (PREDICTED: DNA mismatch repair protein Msh2 [Ursus maritimus])

HSP 1 Score: 375.17 bits (962), Expect = 3.813e-111
Identity = 288/945 (30.48%), Postives = 439/945 (46.46%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVANE--LNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQAGG 906
            GF  FF ++P     T          R F  D+G+F+++H  +A   A   + TQ VV+  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++             + S+ IG  GV M+ +      G+  V GV   ++  R L L E                           E AGD   L  ++    + +   KRA      +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L         +   PQ   G R    ++W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  ++ EY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA++E +A      C  +FATHFHEL  +   +P   V NLH +        A      L + Y+V+ G CD+SFG+HVA LA FP  ++   R+ A  +E  Q  G
Sbjct:   22 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHHEDALLAAREVFKTQGVVKYIGPAGTKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGSKASKENDWYLAFKASPGNLSQFEDILFG---------NNDMSASIGVVGVKMSTV-----DGQRQV-GVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFFTKDIYQDLNRLLKGKKGEPVNSAVLPEMENQVAASSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIRALEKYEGKHQSLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLVSAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNAAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECARQKALELEEFQYIG 862          
BLAST of EWM21358.1 vs. NCBI_GenBank
Match: gi|73969550|ref|XP_538482.2| (PREDICTED: DNA mismatch repair protein Msh2 isoform X1 [Canis lupus familiaris])

HSP 1 Score: 374.4 bits (960), Expect = 7.506e-111
Identity = 292/971 (30.07%), Postives = 450/971 (46.34%), Query Frame = 0
Query:   33 GFAAFFHSLPPPSNATGTLSPSQKCFRFFARDQGNFFSSHGPEARDLAARFYSTQTVVRSQG-----GLSSLSISRKLFASRVLPSLMASGAAVEIWEQAAG-EGSEQEEWFVARAGRPGDTRALEDVMLAFSGQGASQAEQEASSLIGT-GVTMAVLVQEGGAGRGAVFGVAVANTSFRTLALGEL--------------------------EDAGDPKTLESLV----VQLAPLKRALLSADALLSHLG--------------LLPEGSGEIGGAG------------GDGEDG-WEVSLLKPEHLLQYDAAAARVVVGGRGCEGGLWLG--RRRGGGRRLFARLRGSLHASSTQFARPQPFDGGRPSPADRWLQAPLLAPAAIRDRQSIVSLLRSDPSLLSALHECYGASSLTGRGTVFRGTPDLERTAQRFLSLPTSSSSSPARPRVGLRDLLEVYTAALTLGRLSDALSSLADATCPALDALLRLPLARVVAALARFQALVEEVVDVDRLVSTHGREVAVKPSFDPLLLSLRDQMEALTRRMEDTARRASKDLYGQAKDADKRVKLDWSAVHQHHLRVTKKDQRALKESGASLQIQTLSVQKHGQLFTTPSLKELSRRWAAHQAEYLQVQEALVAQAVSVGRSYVKQMQRGGRLLAAIDVFLSLAQVAN--ELNWCPPTLLDDKDGTRRELHITQLRHPVVEAALPSAADFIPNDVHLSAASPIRDPPSQGSCLSLVTGPNCGGKSTYIRSVGIAVLLAQVGACVPATAMEWTLIDKVLCRVGASDNQLQGVSTFMAEMLETHALLAAATPRSLVIVDELGRGTSTFDGFGLAWAVAERLANSTAMQCRTLFATHFHELCDMEQALPPGRVQNLHFSAETPASHPATAASSDLVLTYRVRPGPCDRSFGVHVARLAKFPEEIV---REAAARVEALQ-AGGLRALTSEQQARLAEKKRAWEDEEEG 931
            GF  FF ++P     T          R F  D+G+F+++H  +A   A   + TQ V++  G      L S+ +S+  F S V   L+     VE+++  AG + S++ +W++A    PG+    ED++             + S+ IG  GV M+ +      G+  V GV   ++  R L L E                           E AGD   L  ++    + +   KRA      +   L               +LPE   ++  +              D   G +E++       ++ D AA R +         L+ G      G + L A L         +   PQ   G R    ++W++ PL+    I +R ++V     D  L  +L E            + R  PDL R A++F            R    L+D   +Y     L  +  AL          L A+   PL  + +  ++FQ ++E  +D+D+ V  H  E  VKPSFDP L  LR+ M+ L ++M+ T   A++DL     D  K++KLD SA   ++ RVT K+++ L+ +       T+ +QK+G  FT   L  L+  +  ++ EY + Q+A+V + V++   YV+ MQ    +LA +D  +S A V+N   + +  P +L+   G    + +   RH  VE     A  FIPNDVH      +           ++TGPN GGKSTYIR  G+ VL+AQ+G  VP  + E +++D +L RVGA D+QL+GVSTFMAEMLET ++L +AT  SL+I+DELGRGTST+DGFGLAWA++E +A      C  +FATHFHEL  +   +P   V NLH +        A      L + Y+V+ G CD+SFG+HVA LA FP  ++   ++ A  +E  Q  GG +     + A     KR + + E+G
Sbjct:   18 GFVRFFQAMPEKPTTT---------VRLF--DRGDFYTAHHEDALLAAREVFKTQGVIKYLGPAGTKTLESVVLSKMNFESFVKDLLLIRQYRVEVYKNRAGSKASKENDWYLAFKASPGNLSQFEDILFG---------NNDMSTSIGVVGVKMSTV-----DGQRQV-GVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFFTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDFSQYMKLDIAAVRAL--------NLFQGSVEDTTGSQSLAALL--------NKCKTPQ---GQRL--VNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQE-----------DLLRRFPDLNRLAKKF-----------QRQAANLQDCYRLYQGINQLPNVIRALEKYEGKHQGLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQ-VENH--EFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDL---GLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNK---NFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQG---RITLKASRHACVEVQDEVA--FIPNDVHFEKDKQM---------FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC--MFATHFHELTALANQIPT--VNNLHVT--------ALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGGSQGYDEMEPA----AKRCYLEREQG 880          
The following BLAST results are available for this feature:
BLAST of EWM21358.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101544|gb|EWM21358.1|0.000e+0100.00dna mismatch repair protein msh2 [Nannochloropsis ... [more]
gi|299117067|emb|CBN73838.1|3.140e-12243.92MutS protein homolog 2B [Ectocarpus siliculosus][more]
gi|589947756|ref|XP_006986547.1|4.693e-11530.36PREDICTED: DNA mismatch repair protein Msh2 [Perom... [more]
gi|305855210|ref|NP_001182286.1|1.409e-11429.94DNA mismatch repair protein Msh2 [Sus scrofa] >gi|... [more]
gi|532077526|ref|XP_005324544.1|8.712e-11430.55DNA mismatch repair protein Msh2 isoform X1 [Ictid... [more]
gi|507958393|ref|XP_004686280.1|2.715e-11330.83PREDICTED: DNA mismatch repair protein Msh2 [Condy... [more]
gi|1123987293|ref|XP_019604208.1|4.330e-11329.98PREDICTED: DNA mismatch repair protein Msh2 [Rhino... [more]
gi|348574690|ref|XP_003473123.1|2.701e-11130.19PREDICTED: DNA mismatch repair protein Msh2 [Cavia... [more]
gi|671015752|ref|XP_008698664.1|3.813e-11130.48PREDICTED: DNA mismatch repair protein Msh2 [Ursus... [more]
gi|73969550|ref|XP_538482.2|7.506e-11130.07PREDICTED: DNA mismatch repair protein Msh2 isofor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9344rna9344Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications