EWM21389.1, cds9278 (CDS) Nannochloropsis gaditana

Overview
NameEWM21389.1
Unique Namecds9278
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:349636..350792 +
Alignment locationKK037252.1:351009..351222 +
Alignment locationKK037252.1:351372..351749 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21389.1
ProductCytochrome b5
Orig transcript idgnl|cribi|Naga_100215g2.1631.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:349636..350792 +
KK037252.1supercontigKK037252.1:351009..351222 +
KK037252.1supercontigKK037252.1:351372..351749 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
IPR001810F-box_dom
Homology
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|585101606|gb|EWM21389.1| (Cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 1167.91 bits (3020), Expect = 0.000e+0
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0
Query:    1 MGIDLHLPLPDLPPNMAWGGMLEAYFANAEALAELAAAARSAGVSKQTVVEVVALLVVSAITYYRMYHQLPYPPDPAREPRLRPCPLQTEATEDEHVVPQGFSHEGQPASEPTASLPAILNHLYATLAAARLHAPPTLPLPSLPSLAMDPLTSFPAKLLAEMQEKLAAVVKEGEEAEWAWLCLLLQRVLHKEDGTDGDRETGQTSLATRMLSAAMAQCRPFRWPGEGPGQGLGEGGREEGRERVEGKPAQSMFGWPIADTTTHDDVCDIDTEEAEAAAEAAAAAAAALAAASKAVPPPHFLSTGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGEGEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPPPPQGVGHTEACVLHSVKEALREGRAGIEGRKEGGKGGGRALMGRGGAAGAVSTLAAHLSEQAAMMMRRGGGAAVVEVGGGGRVEEVGQVHRDGLLHHVSEWLLPPVVPGGGG 582
            MGIDLHLPLPDLPPNMAWGGMLEAYFANAEALAELAAAARSAGVSKQTVVEVVALLVVSAITYYRMYHQLPYPPDPAREPRLRPCPLQTEATEDEHVVPQGFSHEGQPASEPTASLPAILNHLYATLAAARLHAPPTLPLPSLPSLAMDPLTSFPAKLLAEMQEKLAAVVKEGEEAEWAWLCLLLQRVLHKEDGTDGDRETGQTSLATRMLSAAMAQCRPFRWPGEGPGQGLGEGGREEGRERVEGKPAQSMFGWPIADTTTHDDVCDIDTEEAEAAAEAAAAAAAALAAASKAVPPPHFLSTGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGEGEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPPPPQGVGHTEACVLHSVKEALREGRAGIEGRKEGGKGGGRALMGRGGAAGAVSTLAAHLSEQAAMMMRRGGGAAVVEVGGGGRVEEVGQVHRDGLLHHVSEWLLPPVVPGGGG
Sbjct:    1 MGIDLHLPLPDLPPNMAWGGMLEAYFANAEALAELAAAARSAGVSKQTVVEVVALLVVSAITYYRMYHQLPYPPDPAREPRLRPCPLQTEATEDEHVVPQGFSHEGQPASEPTASLPAILNHLYATLAAARLHAPPTLPLPSLPSLAMDPLTSFPAKLLAEMQEKLAAVVKEGEEAEWAWLCLLLQRVLHKEDGTDGDRETGQTSLATRMLSAAMAQCRPFRWPGEGPGQGLGEGGREEGRERVEGKPAQSMFGWPIADTTTHDDVCDIDTEEAEAAAEAAAAAAAALAAASKAVPPPHFLSTGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGEGEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPPPPQGVGHTEACVLHSVKEALREGRAGIEGRKEGGKGGGRALMGRGGAAGAVSTLAAHLSEQAAMMMRRGGGAAVVEVGGGGRVEEVGQVHRDGLLHHVSEWLLPPVVPGGGG 582          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|553187906|ref|XP_005854704.1| (hypothetical protein NGA_0367500 [Nannochloropsis gaditana CCMP526] >gi|422294360|gb|EKU21660.1| hypothetical protein NGA_0367500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.525 bits (384), Expect = 2.191e-40
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0
Query:  385 GGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQA-RAMMADF 465
            G WRHFYSVFELEWAAWLCAGRNRE+SCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGH  +A R + A F
Sbjct:   38 GSWRHFYSVFELEWAAWLCAGRNREESCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHRGRAYRGLRAPF 119          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|1210515034|dbj|GAX25997.1| (hypothetical protein FisN_4Hu508 [Fistulifera solaris])

HSP 1 Score: 107.457 bits (267), Expect = 2.804e-21
Identity = 57/169 (33.73%), Postives = 90/169 (53.25%), Query Frame = 0
Query:  304 GLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGE----GEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIV 468
             LP + Q+ ++ +L PRD++ +  V++A  RL +       VW+T W   +  +     V+  ++ R A+   G   + +        + FY  F L    +L AG+N  D C VG+ G +YDL+ FL +HPGS ET++ +AG DAT FF  + HSA AR +    C+V
Sbjct:  171 SLPLDAQIHMLSFLHPRDIVNVACVNKACNRLIDEGPSSSLVWKTIWNRDYAWL-----VESWDIGRLAKERSGIEPNFS--------KDFYFRFSLASTNYLLAGQNNYDRCLVGIGGHIYDLSLFLAVHPGSPETVMAHAGQDATDFFARINHSAGARQIAKSHCVV 326          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|1072228507|gb|OEU13242.1| (hypothetical protein FRACYDRAFT_241578 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.449 bits (254), Expect = 3.547e-20
Identity = 55/171 (32.16%), Postives = 91/171 (53.22%), Query Frame = 0
Query:  304 GLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGEGEQ------VWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIV 468
            G+P +V ++I  +L PRDV+ L+ VS+A   + +         +W+T W   +  I     V +  + ++A      R++ T        + FY +F   +  ++ AG N   +C VG+   +YD+T FL  HPGS +T++V++G DAT FF D+GHS  AR +    C+V
Sbjct:  135 GIPPDVHVQIASFLHPRDVVTLSCVSKAYHTITDESNNTTSVAIWKTLWNRDYSWI-----VYQWTIGKQAFL----RSNCTQWSYS---KDFYFLFGQSYLDYVIAGHNTLTNCLVGIHSNIYDITPFLFSHPGSPDTLMVHSGRDATRFFDDMGHSTGARRIAMSMCVV 293          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|219127913|ref|XP_002184170.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404401|gb|EEC44348.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.3673 bits (246), Expect = 1.341e-18
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 0
Query:  303 TGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGE----GEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCI 467
            T LP +  + I+ +L P+DV+    V ++ +   E     E +W++ W   +  +     +    + R A    G      D E       FY +F L +  ++ AG+N  DSC +GL G +YDLT FL  HPGS ET++V AG D+T+FF  + HS+ AR +    C+
Sbjct:  159 TRLPPDALVNILSFLLPKDVVSFACVDKSCQDAVECGETSEALWKSLWHRDYAWL-----IHAWTIGRGAFDRSGLVPPIYDKE-------FYFLFGLSYLNYVLAGQNTFDSCLIGLNGHIYDLTPFLMNHPGSPETVMVQAGRDSTSFFHSIRHSSGARKIAQSLCV 315          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|219130219|ref|XP_002185268.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403447|gb|EEC43400.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 98.9821 bits (245), Expect = 1.417e-18
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 0
Query:  303 TGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGE----GEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCI 467
            T LP +  + I+ +L P+DV+    V ++ +   E     E +W++ W   +  +     +    + R A    G      D E       FY +F L +  ++ AG+N  DSC +GL G +YDLT FL  HPGS ET++V AG D+T+FF  + HS+ AR +    C+
Sbjct:  159 TRLPPDALVNILSFLLPKDVVSFACVDKSCQDAVECGETSEALWKSLWHRDYAWL-----IHAWTIGRGAFDRSGLVPPIYDKE-------FYFLFGLSYLNYVLAGQNTFDSCLIGLNGHIYDLTPFLMNHPGSPETVMVQAGRDSTSFFHSIRHSSGARKIAQSLCV 315          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|224000720|ref|XP_002290032.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973454|gb|EED91784.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.8113 bits (216), Expect = 1.520e-14
Identity = 58/226 (25.66%), Postives = 91/226 (40.27%), Query Frame = 0
Query:  299 HFLSTGLPDEVQLEIVEYLQPRDVLRLTPVSRAARRL-----------GEGEQ---------VWRTKWAARFGPIWRSAPVQKAEMARKARR----------------------------------ADGQRASA--TDGEMEGGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIV 468
            +F  + LP + ++ I  +L P+DVL  T  +RA RR+            E +          +W+  +   F  +     + K   AR   +                                  +DG  A    T G  +   +  Y  F   W  +  AG N  + C +GL   V+D++ F++ HPGS ET+L+ AG DAT FF+ +GHS  AR +    C+V
Sbjct:  285 NFDISLLPSDAEILIFSFLHPKDVLNFTCTNRAGRRMLDDGLAIANEKTESQHDKAGDSALLIWKALFQRDFAWVLSDWKIGKEAFARSMIKYKLRGWQEEFSSSDEESHGGRVMQHLLSSVGESTSDGANALLPPTYGSTQISMKELYFTFAEAWLNYTIAGCNSTEKCLIGLHNHVFDISNFVDSHPGSTETLLLQAGKDATVFFESMGHSMGARKLALSMCVV 510          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|1150138420|ref|XP_020212890.1| (cytochrome b5 [Cajanus cajan] >gi|1012358633|gb|KYP69817.1| putative cytochrome b5 isoform 2 [Cajanus cajan])

HSP 1 Score: 77.411 bits (189), Expect = 2.160e-13
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0
Query:  389 HFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCI----VPPP 471
            +FY++ EL       +  N +D CW+ ++G VYD+T +L+ HPG  + IL   G DAT  F+DVGHS  AR +M  +CI      PP
Sbjct:    6 NFYAIEEL-------SQHNTKDDCWILVDGKVYDVTQYLDDHPGGDDVILATTGKDATEEFEDVGHSKSARELMEQYCIGELDTSPP 85          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|1174754103|gb|OQV22110.1| (putative Cytochrome b5 [Hypsibius dujardini])

HSP 1 Score: 77.7962 bits (190), Expect = 2.558e-13
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  404 AGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCI 467
            A  N +D CW+ + G VYD+T FLE HPG +E ++ N+G DAT  F+DVGHS  AR MM D+ I
Sbjct:   18 ASHNNKDDCWLIINGKVYDVTKFLEEHPGGEEVLIENSGRDATENFEDVGHSTDAREMMKDYLI 81          
BLAST of EWM21389.1 vs. NCBI_GenBank
Match: gi|1009149645|ref|XP_015892588.1| (PREDICTED: cytochrome b5 [Ziziphus jujuba])

HSP 1 Score: 77.0258 bits (188), Expect = 2.946e-13
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0
Query:  385 GGWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCI 467
            GG R  YS+ ++       +  N  ++CW+ +EG V+D+T FLE HPG  E +L   G DAT  F+DVGHS  ARAMM +F +
Sbjct:    2 GGERKVYSLAQV-------SAHNSRENCWLVIEGKVFDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSTSARAMMDEFYV 77          
The following BLAST results are available for this feature:
BLAST of EWM21389.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101606|gb|EWM21389.1|0.000e+0100.00Cytochrome b5 [Nannochloropsis gaditana][more]
gi|553187906|ref|XP_005854704.1|2.191e-4087.80hypothetical protein NGA_0367500 [Nannochloropsis ... [more]
gi|1210515034|dbj|GAX25997.1|2.804e-2133.73hypothetical protein FisN_4Hu508 [Fistulifera sola... [more]
gi|1072228507|gb|OEU13242.1|3.547e-2032.16hypothetical protein FRACYDRAFT_241578 [Fragilario... [more]
gi|219127913|ref|XP_002184170.1|1.341e-1832.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219130219|ref|XP_002185268.1|1.417e-1832.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224000720|ref|XP_002290032.1|1.520e-1425.66predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1150138420|ref|XP_020212890.1|2.160e-1341.38cytochrome b5 [Cajanus cajan] >gi|1012358633|gb|KY... [more]
gi|1174754103|gb|OQV22110.1|2.558e-1353.13putative Cytochrome b5 [Hypsibius dujardini][more]
gi|1009149645|ref|XP_015892588.1|2.946e-1344.58PREDICTED: cytochrome b5 [Ziziphus jujuba][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9308rna9308Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications