EWM21402.1, cds9273 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|585101623|gb|EWM21402.1| (abc transporter g family member 39 [Nannochloropsis gaditana]) HSP 1 Score: 1403.27 bits (3631), Expect = 0.000e+0 Identity = 692/692 (100.00%), Postives = 692/692 (100.00%), Query Frame = 0
Query: 1 MEEGREEAKEGRVTQEAASQTRTSPTRSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPGSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGPAQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQWWTEGGGEEGGEATIVVFNPATRTFEKASKWGVIQWFFGGKDEGGGIFRFSFVHRWRNLCLMVVFILACNVLLMAALQWRRFERR 692
MEEGREEAKEGRVTQEAASQTRTSPTRSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPGSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGPAQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQWWTEGGGEEGGEATIVVFNPATRTFEKASKWGVIQWFFGGKDEGGGIFRFSFVHRWRNLCLMVVFILACNVLLMAALQWRRFERR
Sbjct: 1 MEEGREEAKEGRVTQEAASQTRTSPTRSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPGSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGPAQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQWWTEGGGEEGGEATIVVFNPATRTFEKASKWGVIQWFFGGKDEGGGIFRFSFVHRWRNLCLMVVFILACNVLLMAALQWRRFERR 692
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|585102598|gb|EWM22171.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 313.923 bits (803), Expect = 1.284e-88 Identity = 216/645 (33.49%), Postives = 330/645 (51.16%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPV--LTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPP-GSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP--AQGKDGVVAYLDSIPGVPPVEA-GENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAW-RVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQWWTEGGGEEGGEATIVVFNPATRTFEKASKWGVIQWFFGGKDEGGGIFRFSFVHRWRNLCLMVVFI 673
L+ + G PG + AL+G+SG+GKTTLLDVLAGRKT G + G IL+NG P R + YV+Q ++VHSP+ T E L FSA LRLP + A V +L+LL + I ++G GSGL E KRV+I E+VA PS+LFLDEPTT LDA +F V+R ++ +A G S++ +IHQPS +F FD LL+L GG+ VY GP + KD ++ YL+++PGV P+ G NPA+W+L C+ AG P+DF +Y A A+R + ++ + P G G P A QL C +A WR P+Y ++R+ + +A+V ++H +P +T D+VG +GL++LS +F +N +V+ +M +ER AFYRE+ + Y V AY +S+ LVE+PY+ V + LF+ Y+ +G + + + ++W F LY++ GQ L L P+ QTAQ +IA I ++ G P + W ++ L P + EG+VM+Q+ EG + PA + I FGG+ F++ +W+++ +++++I
Sbjct: 992 LVKGVTGYARPGSLTALMGSSGAGKTTLLDVLAGRKTT-GCIIGEILVNG--FPKEQRAFSRVMGYVEQ--TDVHSPHSTVREALLFSATLRLPYT--QVTAAQREVFVEDMLALLELSGIADRVIGEDAGSGLLMGERKRVTIGVELVANPSVLFLDEPTTGLDAAKAFEVMRSVKKIA-----------ASGRSVLCTIHQPSCAIFEMFDMLLLLRHGGRTVYFGPLGKRSKD-LINYLEAVPGVIPLRTGGVNPANWMLECI------------GAGIEPAAQPLDFAEYYRDHAL----------ARRNEEICDSLSRPFDSHGHG--------------------LEPIAFDSRYAAPLKVQLRACMAKAIKNYWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAFYREQASSMYSVFAYGVSYGLVELPYIFVSTGLFINVFYWFIGLAAEPFSKFVYYWVFFALYIVCLVFIGQFLICLLPNQQTAQVAGASIAAIMNLFGGYLCTPRTITPFWKFVYYLVPSHYMLEGLVMSQF--EGDSTPVQPIYGLQATPADQ---------YIYDHFGGE--------FTYGAKWKDIGVLLLYI 1556 HSP 2 Score: 88.1965 bits (217), Expect = 3.427e-14 Identity = 143/640 (22.34%), Postives = 250/640 (39.06%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGR--KTGHGRMTGSILLNGRALPPAL--RPVLTAYVDQNSSEVHSPYMTPWEILRFS-AALRLPRACPALPPALYPDL-----------------------------------------------VHAILSLLRMQRIKHSIVGPP-GSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGPAQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLH-------VCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYML--FATAFG-----QALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
+L D+ G + PGR+ L+G GSGK++ L LAGR +T + G + NG P + A+V Q+ + H+ +T E ++F+ + P+A LP L L V L +L + R +H+IVG G+S E KR++ A ++L +D +T LD+ +F + + L R + +IV + QP E+F FD ++++ G +VY GP ++ ++ + +++ P+ ++ A +++ T A P +A E RA+Q +E E + D L R PP+ P L C + +C +R R + RI M + +++ Q D + ++F SL F N + +M Q R FY++R AG + + ++ +LV++P V++++F YF S A + AF Y+L F+TA G + + L PS AQ + + +F + SG+T D+P W L+ + PL + + ++
Sbjct: 221 ILKDLRGVLLPGRLTLLLGPPGSGKSSFLKALAGRVKRTRTSVLKGRVTYNGDTAESHRFSLPKVVAFVSQD--DCHASTLTVQETVQFAYDCMNGPQAKIGLPSRLRNPLPSHRELAKHLLQEQEAASSSSAPSASICAPSSTLGSERYGANKRNGKVEQTLRVLGLSRCQHTIVGNTLCRGISGGEKKRLTTAEMTGGQVNVLLMDSISTGLDSAATFDICKTLSGCTRALQA----------NIVVCLLQPPPEVFDLFDDVILMD-AGHIVYQGP---RELILDHFENLGFRRPLR--KDVADFLVEV----------------TTSAGAEFIIPAAQRYAAGIPDPPTSTEEFVRAFQETEI-YEHMIDN----LER------------------PPSFAPWLRRQRCEFSNGWFRSTWLCLQRQARITLRDRVFLRGRIMQVLLMGAMAGTLFY---QLDAHDWSDKVCMLFFSLMFITLGNLATIPTVMEQ-RAVFYKQRDAGFFPTSSAVVAQMLVQIPIQFVETMVFTSLAYFLSALSRADY-----GAFYLTYVLVAFSTALGIGQIFRLVVHLVPSLAQAQPICSLFVLLFVVFSGLTIKGEDIPFYWTWLYWINPLAWGLRALAVNEF 794
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|553189606|ref|XP_005855037.1| (atp-binding cassette superfamily [Nannochloropsis gaditana CCMP526] >gi|422294022|gb|EKU21322.1| atp-binding cassette superfamily [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 300.827 bits (769), Expect = 2.849e-86 Identity = 207/595 (34.79%), Postives = 308/595 (51.76%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPV--LTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVG-PPGSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLV-IRMLR-ILARGREG-------------GREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP--AQGKDGVVAYLDSIPGVPPVEA-GENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAW-RVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
L+ + G PG + AL+G+SG+GKTTLLDVLAGRKT G + G IL+NG P R + YV+Q ++VHSP+ T E L FSA LRLP + A V +L+LL + I ++G GSGL E KRV+I E+VA PS+LFLDEPTT LDA +F V IR + + RG + ++ G S++ +IHQPS +F FD LL+L GG+ VY GP + KD ++ YL+++PGV P+ G NPA+W+L C+ AG P+DF +Y A A+R + ++ + P G G P A QL C +A WR P+Y ++R+ + +A+V ++H +P +T D+VG +GL++LS +F +N +V+ +M +ER AFYRE+ + Y V AY +S+ LVE+PY+ V + LF+ Y+ +G + + + ++W F LY++ GQ L L P+ QTAQ +IA I ++ G P + W ++ L P + EG+VM+Q+
Sbjct: 357 LVKGVTGYARPGSLTALMGSSGAGKTTLLDVLAGRKT-TGCIIGEILVNG--FPKEQRAFSRVMGYVEQ--TDVHSPHSTVREALLFSATLRLPYT--QVTAAQREVFVEDMLALLELSGIADRVIGEDAGSGLLMGERKRVTIGVELVANPSVLFLDEPTTGLDAAKAFEVGIRSEQPNIFRGDQSEVSAFVSSMSVMRSVKKIAASGRSVLCTIHQPSCAIFEMFDMLLLLRHGGRTVYFGPLGKRSKD-LINYLEAVPGVIPLRTGGVNPANWMLECI------------GAGIEPAAQPLDFAEYYRDHAL----------ARRNEEICDSLSRPFDSHGHG--------------------LEPIAFDSRYAAPLKVQLRACMAKAIKNYWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAFYREQASSMYSVFAYGVSYGLVELPYIFVSTGLFINVFYWFIGLAAEPFSKFVYYWVFFALYIVCLVFIGQFLICLLPNQQTAQVAGASIAAIMNLFGGYLCTPRTITPFWKFVYYLVPSHYMLEGLVMSQF 901
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|553195811|ref|XP_005856212.1| (hypothetical protein NGA_2038100, partial [Nannochloropsis gaditana CCMP526] >gi|422292846|gb|EKU20148.1| hypothetical protein NGA_2038100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 272.707 bits (696), Expect = 5.677e-85 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 423 TAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTA 559
TAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTA
Sbjct: 1 TAAMALVLSGIYHGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTA 137
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|743798799|ref|XP_011011592.1| (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Populus euphratica]) HSP 1 Score: 296.975 bits (759), Expect = 6.198e-83 Identity = 191/586 (32.59%), Postives = 302/586 (51.54%), Query Frame = 0
Query: 27 RSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIY--HGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
R P K LL+DI G PG + AL+G SG+GKTTLLDVL+GRKTG G + G I + G ++ Y +Q +++HSP +T E + +SA LRLP P + + ++ +L + + IK S+VG PG SGLS E+ KR+++A E+VA PS++F+DEPT+ LDA + +V+R+++ +A E GR +IV +IHQPS ++F FD L+++ GG+++Y GP Q V+ Y ++IPGVP ++ NPA+W+L ++ T + D +DF Y SA ++ + V++ GS+ P TCFP + QL C + + WR PSY RI + AL+ ++ G DL G ++ + F N + VL + +ER FYRERFAG Y AY+ + +LVEVPY+ ++ +L+++ Y +G+S +A+++ W + +F +LF G L +LTP+ Q A L + SG +P+ W+ L+ +CP + M+ +Q+
Sbjct: 873 RGFPQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLSGRKTG-GTIEGEIRIGGYPKVQDSFARVSGYCEQ--TDIHSPQITVEESVIYSAWLRLP---PEIDTKTKYEFINQVLETIELDEIKDSLVGIPGISGLSIEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRVVKNIA---ETGR--------TIVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQRSSKVIQYFENIPGVPKIKNRYNPATWMLEV-------------SSKTAEADLGVDFGEAYEGSALYEENKELVKQLSSPTPGSKDLHFP--------------------------TCFPQ--------NGWEQLKACLWKQNLSYWRSPSYNLLRIVFMSFGALLFGLLFWQQGNKINNQQDLFSIAGSMYSIIIFFGINNCSPVLPFVARERTVFYRERFAGMYSSWAYSFAQVLVEVPYLLIEGILYVIITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTPNIQVASNLAAFAYTTLNFFSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQY 1394 HSP 2 Score: 92.8189 bits (229), Expect = 1.163e-15 Identity = 77/268 (28.73%), Postives = 122/268 (45.52%), Query Frame = 0
Query: 26 TRSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAAL--------------RLPRACPALPP-----------------ALYPDLVHAILSLLRMQRIKHSIVGPP-GSGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP 261
+RS+ +++ D++G + PGRM L+G G GKTTLL L+G+ + ++TG I NG L + AYV Q ++H P MT E + FSA R + LP AL D IL +L + ++VG P G+S + KR+S VV LF+DE + LD+ +F ++ ++ LA +++ S+ QP+ E+F FD ++++ G +VY GP
Sbjct: 178 SRSKQRTKISIIKDVSGIIKPGRMTLLLGPPGCGKTTLLKALSGKPSNSLKVTGEISYNGHRLEEFVPQKTAAYVSQ--YDLHIPEMTVRETVDFSARCQGTGSQAEILMEISRKEKQAGILPDTDLDTYMKGISEEGEKIALQTDY---ILEILGLDICADTMVGDPMRRGISGGQKKRLSTGEMVVGPMKALFMDEISNGLDSSTTFQIVSCMQHLAHITNA----------TVLISLLQPAPEIFDLFDDIMLMAE-GMVVYHGP 429
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|566191130|ref|XP_002316074.2| (hypothetical protein POPTR_0010s16350g [Populus trichocarpa] >gi|550329936|gb|EEF02245.2| hypothetical protein POPTR_0010s16350g [Populus trichocarpa]) HSP 1 Score: 295.434 bits (755), Expect = 1.529e-82 Identity = 190/586 (32.42%), Postives = 302/586 (51.54%), Query Frame = 0
Query: 27 RSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIY--HGQPQETVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
R P K LL+DI G PG + AL+G SG+GKTTL+DVL+GRKTG G + G I + G ++ Y +Q +++HSP +T E + +SA LRLP P + + V+ +L + + IK S+VG PG SGLS E+ KR+++A E+VA PS++F+DEPT+ LDA + +V+R+++ + E GR +IV +IHQPS ++F FD L+++ GG+++Y GP Q V+ Y ++IPGVP ++ NPA+W+L ++ T + D +DF A++GS E + L +Q + P + + TCFP + QL C + + WR PSY RI + AL+ ++ G DL G ++ + F N + VL + +ER FYRERFAG Y AY+ + +LVEVPY+ ++ +L+++ Y +G+S +A+++ W + +F +LF G L +LTP+ Q A L + SG +P+ W+ L+ +CP + M+ +Q+
Sbjct: 811 RGFPQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GTIEGEIRIGGYPKVQDSFARVSGYCEQ--TDIHSPQITVEESVIYSAWLRLP---PEIDTKTKYEFVNQVLETIELDEIKDSLVGIPGISGLSIEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRVVKNIV---ETGR--------TIVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQRSSKVIEYFENIPGVPKIKNRYNPATWMLEV-------------SSKTAEADLGVDFG--------------------EAYEGSTLYEE------NKELVKQLSSPTPGSKDLHFPTCFPQ--------NGWEQLKACLWKQHLSYWRSPSYNLLRIVFMSFGALLFGLLFWQQGNKINNQQDLFSIAGSMYSIIIFFGINNCSPVLAFVARERTVFYRERFAGMYSSWAYSFAQVLVEVPYLLIEGILYVIITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTPNIQVASNLAAFAYTTLNFFSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQY 1332 HSP 2 Score: 83.9593 bits (206), Expect = 5.591e-13 Identity = 76/290 (26.21%), Postives = 127/290 (43.79%), Query Frame = 0
Query: 7 EAKEGRVTQEAASQT-RTSP-----TRSRPLKGRTLLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSA-----------ALRLPRACPALPPALYPDL-----------------VHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP 261
E K V EA + R P + ++ + +++ D++G + PGRM L+G G GKTTLL L+G+ + ++ G I NG L + AYV Q ++H P MT E + FSA + + R DL +L +L + ++VG G+S + KR+S VV LF+DE + LD+ +F ++ ++ LA + +++ S+ QP+ E+F FD ++++ G +VY GP
Sbjct: 140 EVKYRNVCVEADCEVVRGKPLPTLWSTAKSILSISIIKDVSGIIKPGRMTLLLGPPGCGKTTLLKALSGKPSNSLKVAGEISYNGHRLEEFVPQKTAAYVSQ--YDLHIPEMTVRETVDFSARCQGTGSQAEILMEISRKEKQAGILQDTDLDTYMKGISEEGAKITLQTDYVLEILGLDICADTMVGDTMRRGISGGQKKRLSTGEMVVGPMKALFMDEISNGLDSSTTFQIVSCMQHLAHITDA----------TVLISLLQPAPEIFDLFDDIMLMAE-GMVVYHGP 416
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|755573298|gb|AJK30641.1| (pleiotropic drug resistance transporter, partial [Panax ginseng]) HSP 1 Score: 285.034 bits (728), Expect = 6.593e-82 Identity = 182/577 (31.54%), Postives = 301/577 (52.17%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQE--TVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
LL +I G PG + AL+G SG+GKTTLLDVL+GRK+ G + G+I + G ++ Y +Q +++HSP +T E L +SA LRLP + + + V +L ++ + +K ++VG PG SG+S E+ KR++IA E+V+ PS++F+DEPT+ LDA + +V+R+++ + R ++V +IHQPS ++F FD L+++ RGGQ++Y G Q ++ Y +++PGVP ++ NPA+W+L +A R G +DF Y S + RR +E LAR+ + P + + TCF + Q C + + WR P Y +R+ +L+L I G+ +E + DL+ LG +F+ L F N ++VL ++ ER YRERFAG Y AY+ + +++E+PY+ +Q+VLFL+ Y +GF + RV +++ +F ML+ T G L ++T S Q A + + + S+ SG +PR W + +CP + G++ +Q+
Sbjct: 229 LLHEITGSFRPGILTALMGVSGAGKTTLLDVLSGRKSS-GIIEGNIRIGGYPKVQDTYARISGYCEQ--TDIHSPQITIEESLTYSAWLRLP---AQIHQSKKSEFVAEVLEMIELNDVKDALVGFPGVSGISNEQRKRLTIAVELVSNPSIIFMDEPTSGLDARSAAIVMRVVKNIVNTRR-----------TVVCTIHQPSIDIFESFDELILMKRGGQIIYSGELGQHSSKLIEYFENVPGVPKIQENHNPATWMLEV----------SSSSAEARLG---LDFGQLYKESH----LCRRTKE----------------------LARELSYPPQDSKELQFSTCFSQ--------NGWEQFKACLWKHNLSYWRNPKYNLARLTFITMASLLLGAILWGKGKEINSEQDLLNILGSMFIFLQFLGISNCSSVLSIISTERTILYRERFAGMYSSWAYSFAQVIIEIPYIFLQAVLFLIITYPAIGFYWSVDRVFFYFYTMFCTMLYFTYLGMLLVSMTSSLQMASVMASFCYTMISLFSGFLIPEPRIPRWWSWCYWICPPAWSLRGLITSQY 741
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|947119625|gb|KRH67874.1| (hypothetical protein GLYMA_03G192500 [Glycine max]) HSP 1 Score: 280.026 bits (715), Expect = 2.086e-81 Identity = 185/560 (33.04%), Postives = 286/560 (51.07%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQETVP--DLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLW 591
LL D +G PG + AL+G SG+GKTTL+DVLAGRKTG G + GSI ++G A ++ Y +QN ++HSPY+T +E L FSA LRLP A ++ V ++ L+ + +I++++VG PG GLS E+ KRV+IA E+VA PS++F+DEPT+ LDA + +V+R +R + GR ++V +IHQPS ++F FD LL++ RGGQ++Y GP ++ Y +SI GV ++ G NPA+W+L P + IDF Y S T+ +R +E + E +T P +GS L P SF Q C + + + WR PSY R+ T A+ ++ I+ + + DL LG ++ ++ F N+ V ++ ER YRER AG Y YA+S + +E Y Q+ +F + +Y +GF A + F+ F+ + +++ T +G + A+TPS Q A + I++ G +PR IP+W
Sbjct: 51 LLHDASGAFRPGILTALMGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKNQATFARVSGYCEQN--DIHSPYVTVYESLLFSAWLRLPSDVKAQNRKMF---VEEVMELVELNQIRNALVGLPGVDGLSTEQRKRVTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGR--------TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGHHSQKLIEYFESIAGVQKIKDGYNPATWMLEVSTPSI-------------EAHLGIDFAEIYTNS----TLYQRNQELIK-----ELSTPP---QGSSDLR----------------------FPTKYSQSFFVQCKACFWKQYWSYWRNPSYNAVRLFFTIAIGIMFGLIFWNKAKNIKKQQDLFDLLGAMYAAVMFLGTSNTMGVQPIVDIERTVLYRERAAGMYSTLTYAISQVAIEAIYSATQTTIFSVIIYSMMGFEWTARKFLSFYYFMLMCLIYYTLYGMMIVAVTPSFQIAAVCNSFFLTIWNTFCGFV-----IPRTQIPIW 541
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|755573296|gb|AJK30640.1| (pleiotropic drug resistance transporter, partial [Panax ginseng]) HSP 1 Score: 286.189 bits (731), Expect = 2.269e-79 Identity = 182/577 (31.54%), Postives = 301/577 (52.17%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQE--TVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
LL +I G PG + AL+G SG+GKTTLLDVL+GRK+ G + G+I + G ++ Y +Q +++HSP +T E L +SA LRLP + + + V +L ++ + +K ++VG PG SG+S E+ KR++IA E+V+ PS++F+DEPT+ LDA + +V+R+++ + R ++V +IHQPS ++F FD L+++ RGGQ++Y G Q ++ Y +++PGVP ++ NPA+W+L +A R G +DF Y S + RR +E LAR+ + P + + TCF + Q C + + WR P Y +R+ +L+L I G+ +E + DL+ LG +F+ L F N ++VL ++ ER YRERFAG Y AY+ + +++E+PY+ +Q+VLFL+ Y +GF + RV +++ +F ML+ T G L ++T S Q A + + + S+ SG +PR W + +CP + G++ +Q+
Sbjct: 794 LLHEITGSFRPGILTALMGVSGAGKTTLLDVLSGRKSS-GIIEGNIRIGGYPKVQDTYARISGYCEQ--TDIHSPQITIEESLTYSAWLRLP---AQIHQSKKSEFVAEVLEMIELNDVKDALVGFPGVSGISNEQRKRLTIAVELVSNPSIIFMDEPTSGLDARSAAIVMRVVKNIVNTRR-----------TVVCTIHQPSIDIFESFDELILMKRGGQIIYSGELGQHSSKLIEYFENVPGVPKIQENHNPATWMLEV----------SSSSAEARLG---LDFGQLYKESH----LCRRTKE----------------------LARELSYPPQDSKELQFSTCFSQ--------NGWEQFKACLWKHNLSYWRNPKYNLARLTFITMASLLLGAILWGKGKEINSEQDLLNILGSMFIFLQFLGISNCSSVLSIISTERTILYRERFAGMYSSWAYSFAQVIIEIPYIFLQAVLFLIITYPAIGFYWSVDRVFFYFYTMFCTMLYFTYLGMLLVSMTSSLQMASVMASFCYTMISLFSGFLIPEPRIPRWWSWCYWICPPAWSLRGLITSQY 1306
BLAST of EWM21402.1 vs. NCBI_GenBank
Match: gi|755573294|gb|AJK30639.1| (pleiotropic drug resistance transporter, partial [Panax ginseng]) HSP 1 Score: 286.189 bits (731), Expect = 3.065e-79 Identity = 182/577 (31.54%), Postives = 301/577 (52.17%), Query Frame = 0
Query: 36 LLTDINGCVPPGRMMALIGASGSGKTTLLDVLAGRKTGHGRMTGSILLNGRALPPALRPVLTAYVDQNSSEVHSPYMTPWEILRFSAALRLPRACPALPPALYPDLVHAILSLLRMQRIKHSIVGPPG-SGLSFEEMKRVSIAAEVVALPSLLFLDEPTTYLDAEHSFLVIRMLRILARGREGGREEGWKGGMSIVASIHQPSRELFAQFDSLLVLGRGGQLVYVGP-AQGKDGVVAYLDSIPGVPPVEAGENPASWVLRCVQPEAWLAREGPGAAGTRQGDAPIDFPGWYARSAWHDTMRRRVREAQRAWQGSETATEPLTDKGSGRLARQETDPKGRPRGATWRTCFPPALPPSLPPSFCTQLHVCTRRAWSTCWRRPSYQWSRIGGTAAMALVLSGIYHGQPQE--TVPDLVGYLGLIFLSLTFTACINSTAVLELMHQERPAFYRERFAGAYGVPAYALSWLLVEVPYVGVQSVLFLLFLYFPLGFSTAAWRVAWFWAFLFLYMLFATAFGQALAALTPSTQTAQTLFNTIAPIFSIMSGMTFMPGDVPRGWIPLWVLCPLNKAFEGMVMTQW 608
LL +I G PG + AL+G SG+GKTTLLDVL+GRK+ G + G+I + G ++ Y +Q +++HSP +T E L +SA LRLP + + + V +L ++ + +K ++VG PG SG+S E+ KR++IA E+V+ PS++F+DEPT+ LDA + +V+R+++ + R ++V +IHQPS ++F FD L+++ RGGQ++Y G Q ++ Y +++PGVP ++ NPA+W+L +A R G +DF Y S + RR +E LAR+ + P + + TCF + Q C + + WR P Y +R+ +L+L I G+ +E + DL+ LG +F+ L F N ++VL ++ ER YRERFAG Y AY+ + +++E+PY+ +Q+VLFL+ Y +GF + RV +++ +F ML+ T G L ++T S Q A + + + S+ SG +PR W + +CP + G++ +Q+
Sbjct: 862 LLHEITGSFRPGILTALMGVSGAGKTTLLDVLSGRKSS-GIIEGNIRIGGYPKVQDTYARISGYCEQ--TDIHSPQITIEESLTYSAWLRLP---AQIHQSKKSEFVAEVLEMIELNDVKDALVGFPGVSGISNEQRKRLTIAVELVSNPSIIFMDEPTSGLDARSAAIVMRVVKNIVNTRR-----------TVVCTIHQPSIDIFESFDELILMKRGGQIIYSGELGQHSSKLIEYFENVPGVPKIQENHNPATWMLEV----------SSSSAEARLG---LDFGQLYKESH----LCRRTKE----------------------LARELSYPPQDSKELQFSTCFSQ--------NGWEQFKACLWKHNLSYWRNPKYNLARLTFITMASLLLGAILWGKGKEINSEQDLLNILGSMFIFLQFLGISNCSSVLSIISTERTILYRERFAGMYSSWAYSFAQVIIEIPYIFLQAVLFLIITYPAIGFYWSVDRVFFYFYTMFCTMLYFTYLGMLLVSMTSSLQMASVMASFCYTMISLFSGFLIPEPRIPRWWSWCYWICPPAWSLRGLITSQY 1374 The following BLAST results are available for this feature:
BLAST of EWM21402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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