EWM21408.1, cds9265 (CDS) Nannochloropsis gaditana

Overview
NameEWM21408.1
Unique Namecds9265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:305723..306142 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21408.1
ProductProtein kinase, ATP binding site
Partialtrue
Orig transcript idgnl|cribi|Naga_100466g6.1604.mrna
GbkeyCDS
End range.
End range306142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:305723..306142 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006468protein phosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
Homology
BLAST of EWM21408.1 vs. NCBI_GenBank
Match: gi|585101634|gb|EWM21408.1| (Protein kinase, ATP binding site, partial [Nannochloropsis gaditana])

HSP 1 Score: 265.388 bits (677), Expect = 1.303e-89
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 TSLVETEPAVESTQERVGTGAEAGEGDGEWIPFRELRFLEAVGAGRSGTLWRGVWKGREVAVKVVKVAAGATGKGEGGGRTNEGKEVGEARRAFERERRIVRGLRHQNLCPLLGVTREGRREAGGRYWPWCTPSWRAGL 139
            TSLVETEPAVESTQERVGTGAEAGEGDGEWIPFRELRFLEAVGAGRSGTLWRGVWKGREVAVKVVKVAAGATGKGEGGGRTNEGKEVGEARRAFERERRIVRGLRHQNLCPLLGVTREGRREAGGRYWPWCTPSWRAGL
Sbjct:    1 TSLVETEPAVESTQERVGTGAEAGEGDGEWIPFRELRFLEAVGAGRSGTLWRGVWKGREVAVKVVKVAAGATGKGEGGGRTNEGKEVGEARRAFERERRIVRGLRHQNLCPLLGVTREGRREAGGRYWPWCTPSWRAGL 139          
BLAST of EWM21408.1 vs. NCBI_GenBank
Match: gi|255077041|ref|XP_002502175.1| (predicted protein [Micromonas commoda] >gi|226517440|gb|ACO63433.1| predicted protein [Micromonas commoda])

HSP 1 Score: 59.6918 bits (143), Expect = 8.676e-8
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   18 GTGAEAGEGDGEW-IPFRELRFLEAVGAGRSGTLWRGVWKGREVAVKVVKVAAGATGKGEGGGRTNEGKEVGEARRAFERERRIVRGLRHQNLCPLLG 114
            G  A AG  D EW I   +L F+E + +G  G L+RG + G+EVA+KV+K          GG  + E     E  R F +E  I+R +RH+N+  L+G
Sbjct:  166 GEKALAGASDSEWEIQEVQLNFMEKIASGAFGVLYRGSYCGQEVAIKVLKT---------GGKSSQE-----EVYREFAQELSILRKVRHKNIVQLIG 249          
BLAST of EWM21408.1 vs. NCBI_GenBank
Match: gi|156370900|ref|XP_001628505.1| (predicted protein [Nematostella vectensis] >gi|156215483|gb|EDO36442.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 59.6918 bits (143), Expect = 1.064e-7
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 0
Query:   31 IPFRELRFLEAVGAGRSGTLWRGVWKGREVAVKVVKVAAGATGKGEGGGRTNEGKEVGEARRAFERERRIVRGLRHQNLCPLLGVTRE 118
            IPFR +  ++ +G G  G ++RG+W+  EVAVKV               RT+  ++  +   + ++E RI   LRHQN+  LLGV+ E
Sbjct:   70 IPFRNIELIDVIGVGAFGKVYRGIWRDEEVAVKV--------------ARTDNYEDFTQTLDSVKKEARIFSMLRHQNIVGLLGVSLE 143          
The following BLAST results are available for this feature:
BLAST of EWM21408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101634|gb|EWM21408.1|1.303e-89100.00Protein kinase, ATP binding site, partial [Nannoch... [more]
gi|255077041|ref|XP_002502175.1|8.676e-837.76predicted protein [Micromonas commoda] >gi|2265174... [more]
gi|156370900|ref|XP_001628505.1|1.064e-735.23predicted protein [Nematostella vectensis] >gi|156... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9295rna9295Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications