EWM21418.1, cds9244 (CDS) Nannochloropsis gaditana

Overview
NameEWM21418.1
Unique Namecds9244
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:262615..262815 -
Alignment locationKK037252.1:262087..262386 -
Alignment locationKK037252.1:261294..261899 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21418.1
Productdhhc zinc finger domain-containing protein
Orig transcript idgnl|cribi|Naga_100147g5.4599.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:262615..262815 -
KK037252.1supercontigKK037252.1:262087..262386 -
KK037252.1supercontigKK037252.1:261294..261899 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001594Znf_DHHC_palmitoyltrfase
Homology
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|585101646|gb|EWM21418.1| (dhhc zinc finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 748.043 bits (1930), Expect = 0.000e+0
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0
Query:    1 MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN 368
            MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN
Sbjct:    1 MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN 368          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|553183546|ref|XP_005853919.1| (dhhc zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|553190915|ref|XP_005855290.1| dhhc zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293768|gb|EKU21068.1| dhhc zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422295140|gb|EKU22439.1| dhhc zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 353/368 (95.92%), Postives = 353/368 (95.92%), Query Frame = 0
Query:    1 MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN 368
            MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPF              ARHHYLIYLSPPPPSSSLGPS PSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN
Sbjct:    1 MLSPIAESPLKEQAAEQDEEGETKNVNHSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPSSAPAGHLGATHSPLPSRSASSSRTNPWRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFV------------TARHHYLIYLSPPPPSSSLGPSLPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRVEN 356          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|1173945023|gb|OQR93699.1| (dhhc zinc finger domain-containing protein [Thraustotheca clavata])

HSP 1 Score: 129.798 bits (325), Expect = 3.319e-32
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 0
Query:  214 GRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSV----PPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLA 351
            G +  VGPHW GV+ T+ L+ +++ LFI   C  L  ++ L +     +T+  L +T C DPG++ R      P  +    YC IC ++      HC+DCGVCIE  DHHCPWMG C+G  NM  F  FN  W+ Y++FV+A
Sbjct:   73 GPIILVGPHWIGVLVTLALIVVSTILFIDQQCSQLNGWYTLASLACASITIYFLFQTTCTDPGIVPRGTIQTDPAIIAHCSYCDICDVHQQRGTEHCDDCGVCIENYDHHCPWMGKCIGKKNMKWFQLFNMAWVLYLVFVIA 214          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|669162078|ref|XP_008616601.1| (hypothetical protein SDRG_12314 [Saprolegnia diclina VS20] >gi|530731792|gb|EQC30034.1| hypothetical protein SDRG_12314 [Saprolegnia diclina VS20])

HSP 1 Score: 129.798 bits (325), Expect = 4.870e-32
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 0
Query:  219 VGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLI----TRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRV 366
            VGPHW GV+ T+ L+ +++ LFI   C  L  ++ L +      T   L +T C DPG++    T+S P  L    YC IC ++      HC+DCGVCIE  DHHCPWMG C+G  NM  F  FN  W+ Y++FVL      +     A+RV
Sbjct:   82 VGPHWIGVLVTLGLIIVSTILFIGQQCAELDAWYTLASLGMAAATSYFLFQTTCTDPGIVARGTTQSDPAILATCSYCDICDVHQFRGTEHCDDCGVCIEKYDHHCPWMGKCIGKKNMKWFQLFNLAWIVYLVFVLTVTMQNASSNFVASRV 233          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|813178410|ref|XP_012205674.1| (hypothetical protein SPRG_11139 [Saprolegnia parasitica CBS 223.65] >gi|641529520|gb|KDO23691.1| hypothetical protein SPRG_11139 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 128.642 bits (322), Expect = 1.683e-31
Identity = 60/152 (39.47%), Postives = 81/152 (53.29%), Query Frame = 0
Query:  219 VGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSV----PPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNATRV 366
            VGPHW GV+ T  L+ +++ LFI   C  L  ++ L +      T   L +T C DPG++ R      P  +    YC IC ++      HC+DCGVCIE  DHHCPWMG C+G  NM  F  FN  W+ Y++FVL      +     A+RV
Sbjct:   83 VGPHWIGVLVTTGLIIVSTILFIGQQCAALDAWYTLASLAMATATCYFLFQTTCTDPGIVARGTTQTDPAIIATCSYCDICDVHQFRGTEHCDDCGVCIEKYDHHCPWMGKCIGKKNMKWFQLFNLAWIVYLVFVLTVTMQNASSNFVASRV 234          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|1214685010|gb|OWZ02246.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 128.642 bits (322), Expect = 6.381e-31
Identity = 75/225 (33.33%), Postives = 107/225 (47.56%), Query Frame = 0
Query:  165 DPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPP----------------SLP----------RRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFGNA 363
            DP  CLC      +     H Y+++       S++G +            +L  VGPHW GV+ T+ ++ +++ +F+S     +  +  L+     G+TL  L +T C DPG++                       LP          RR+YC IC +    T  HCEDCGVC+ G DHHCPWMG C+G GNM AF  FN  W+ YV FVL  +A  S  +G+A
Sbjct:   63 DPLSCLC----CCKFKRLGHSYILH--ERRVVSAIGATET----------KLLIVGPHWIGVLVTLGIILVSTSMFLSQHVKTMKWYETLITLGLCGMTLYYLFQTTCTDPGIVRHKQKEVSQTEDENEVAELEAGQLPTEAFGSRRPSRRRYCDICGIDQDRTTDHCEDCGVCVAGFDHHCPWMGKCIGRGNMYAFKMFNVSWVVYVCFVLF-IAITSVDWGHA 270          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|813232273|ref|XP_012213165.1| (hypothetical protein SPRG_18337 [Saprolegnia parasitica CBS 223.65] >gi|641519306|gb|KDO16126.1| hypothetical protein SPRG_18337 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 124.405 bits (311), Expect = 7.154e-31
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  219 VGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSV----PPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVL 350
            VGPHW GV+ T  L+ +++ LFI   C  L  ++ L +      T   L +T C DPG++ R      P  +    YC IC ++      HC+DCGVCIE  DHHCPWMG C+G  NM  F  FN  W+ Y++FVL
Sbjct:    3 VGPHWIGVLVTTGLIIVSTILFIGQQCAALDAWYTLASLAMATATCYFLFQTTCTDPGIVARGTTQTDPAIIATCSYCDICDVHQFRGTEHCDDCGVCIEKYDHHCPWMGKCIGKKNMKWFQLFNLAWIVYLVFVL 138          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|1173949180|gb|OQR97248.1| (dhhc zinc finger domain-containing protein [Achlya hypogyna])

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-30
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 0
Query:  219 VGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLI----TRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVL 350
            VGPHW GV+ T+ L+  ++ LFI   C  L  ++ + +      T   L +T C DPG++    T++ P  +    YC IC ++      HC+DCGVCIE  DHHCPWMG C+G  NM  F  FN  W+ Y++FVL
Sbjct:  101 VGPHWIGVLVTLSLILASTILFIGQQCAELEAWYTVASLGMASATTYFLFKTTCTDPGIVPRGTTQTDPAVVATCSYCDICDVHQFRGTEHCDDCGVCIEKYDHHCPWMGKCIGKKNMKWFQLFNLAWILYLVFVL 236          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|566012840|gb|ETI35751.1| (hypothetical protein F443_17971 [Phytophthora parasitica P1569] >gi|570940289|gb|ETP05546.1| hypothetical protein F441_17839 [Phytophthora parasitica CJ01A1] >gi|570970559|gb|ETP33678.1| hypothetical protein F442_17813 [Phytophthora parasitica P10297])

HSP 1 Score: 120.553 bits (301), Expect = 5.534e-28
Identity = 70/221 (31.67%), Postives = 99/221 (44.80%), Query Frame = 0
Query:  165 DPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLI----------------------------------TRSVPPSLP-RRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVL 350
            DP  CLC      +     H Y+++         +G +  + +       +L  VGPHW GV+ TV ++ +++ +F+S     +  +  L+      +TL  L +T C DPG+I                                    +  P  P RR+YC IC +    +  HCEDCGVCI G DHHCPWMG C+G  NM AF  FN  W+ YV FVL
Sbjct:   59 DPLSCLCCC----KFKRLGHSYILH------ERRVGSADGTKT-------KLVIVGPHWIGVLVTVGIILVSTAMFLSQHVETMAWYNTLITLGLCSVTLYYLFQTTCTDPGIIRPPRQKDVSQTEDESEGMELEAGQAPVVEGAMLPAEAFGPRRPSRRRYCDICGIEQDRSTDHCEDCGVCIAGYDHHCPWMGKCIGRDNMHAFKMFNVAWVVYVCFVL 262          
BLAST of EWM21418.1 vs. NCBI_GenBank
Match: gi|675175197|ref|XP_008896483.1| (hypothetical protein PPTG_04344 [Phytophthora parasitica INRA-310] >gi|568104222|gb|ETN18879.1| hypothetical protein PPTG_04344 [Phytophthora parasitica INRA-310])

HSP 1 Score: 120.553 bits (301), Expect = 6.458e-28
Identity = 70/221 (31.67%), Postives = 99/221 (44.80%), Query Frame = 0
Query:  165 DPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLI----------------------------------TRSVPPSLP-RRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVL 350
            DP  CLC      +     H Y+++         +G +  + +       +L  VGPHW GV+ TV ++ +++ +F+S     +  +  L+      +TL  L +T C DPG+I                                    +  P  P RR+YC IC +    +  HCEDCGVCI G DHHCPWMG C+G  NM AF  FN  W+ YV FVL
Sbjct:   59 DPLSCLCCC----KFKRLGHSYILH------ERRVGSADGTKT-------KLVIVGPHWIGVLVTVGIILVSTAMFLSQHVETMAWYNTLITLGLCSVTLYYLFQTTCTDPGIIRPPRQKDVSQTEDESEGMELEAGQAPVVEGAMLPAEAFGPRRPSRRRYCDICGIEQDRSTDHCEDCGVCIAGYDHHCPWMGKCIGRDNMHAFKMFNVAWVVYVCFVL 262          
The following BLAST results are available for this feature:
BLAST of EWM21418.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101646|gb|EWM21418.1|0.000e+0100.00dhhc zinc finger domain-containing protein [Nannoc... [more]
gi|553183546|ref|XP_005853919.1|0.000e+095.92dhhc zinc finger domain-containing protein [Nannoc... [more]
gi|1173945023|gb|OQR93699.1|3.319e-3240.85dhhc zinc finger domain-containing protein [Thraus... [more]
gi|669162078|ref|XP_008616601.1|4.870e-3240.79hypothetical protein SDRG_12314 [Saprolegnia dicli... [more]
gi|813178410|ref|XP_012205674.1|1.683e-3139.47hypothetical protein SPRG_11139 [Saprolegnia paras... [more]
gi|1214685010|gb|OWZ02246.1|6.381e-3133.33Transmembrane protein [Phytophthora megakarya][more]
gi|813232273|ref|XP_012213165.1|7.154e-3141.91hypothetical protein SPRG_18337 [Saprolegnia paras... [more]
gi|1173949180|gb|OQR97248.1|2.971e-3041.18dhhc zinc finger domain-containing protein [Achlya... [more]
gi|566012840|gb|ETI35751.1|5.534e-2831.67hypothetical protein F443_17971 [Phytophthora para... [more]
gi|675175197|ref|XP_008896483.1|6.458e-2831.67hypothetical protein PPTG_04344 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9274rna9274Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications