EWM21422.1, cds9243 (CDS) Nannochloropsis gaditana

Overview
NameEWM21422.1
Unique Namecds9243
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:258600..258867 +
Alignment locationKK037252.1:259075..260081 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21422.1
Productring finger protein 10
Orig transcript idgnl|cribi|Naga_100147g2.4603.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:258600..258867 +
KK037252.1supercontigKK037252.1:259075..260081 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|585101650|gb|EWM21422.1| (ring finger protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 825.469 bits (2131), Expect = 0.000e+0
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0
Query:    1 MDDVSSAREDKACPSSPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRWEEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKSDPPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG 424
            MDDVSSAREDKACPSSPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRWEEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKSDPPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG
Sbjct:    1 MDDVSSAREDKACPSSPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRWEEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKSDPPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG 424          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|553190931|ref|XP_005855295.1| (hypothetical protein NGA_0127100 [Nannochloropsis gaditana CCMP526] >gi|422293773|gb|EKU21073.1| hypothetical protein NGA_0127100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 356/371 (95.96%), Postives = 357/371 (96.23%), Query Frame = 0
Query:   54 MRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRWEEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKSDPPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG 424
            MRCLMAEAGGRHALLPQVVEGTV             GRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDR EEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKS+PPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG
Sbjct:    1 MRCLMAEAGGRHALLPQVVEGTVFGGGDP-------GRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRREEAGEGEDGGKEGEKEGGVLSGSPSEERRALTSSFAEVIRKKGGAATTMLREEMFPALGGGGGGSPAPMSSSPPGRKSEPPPLSGAVPANGGTGGASGTGGSGGRDCSSPPSLRASAPPLGRVPEPGSGGEGGRGVWTGRTPFSVTSGTSSSLPERSEAGGMWQAGQASPGASIPPTASDGKEPPRPGKQPLQPHQQQKKKGKGGGKGIPIFSTGSQRSYG 364          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1173959799|gb|OQS05993.1| (hypothetical protein THRCLA_01935 [Thraustotheca clavata])

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-19
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 0
Query:   16 SPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAV 158
            SPS S     ++GE  + +   FYQ+E+G   FLHP+TMRCL  E G     LP  +   VLE E +V+  E R R+ FL HLP      L EL L   ++SP TL+ F+ ++KKR + R+ ++RAE  E  +R   +E   V
Sbjct:  287 SPSESF----IAGEESEGEVYSFYQVENGHTVFLHPITMRCLTKEFGD---FLPSSIAAKVLEIEHVVMNDENRKRFRFLSHLPSLCDFYLCELDLKD-IVSPETLQHFQGDLKKRTRARQAKKRAEANENRKRKDSIESRFV 421          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|298708832|emb|CBJ30791.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 2.157e-17
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 0
Query:   38 FYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGRRSSLTEEEIRRIQAQREKGVDLNGPQP 190
            F+Q  DGQ AFLHPL MR L+ +A  R   LP  ++  VLE ET+ LTPELR R  FL HLP++  +  +E+ +         L+L   E       RK RE  ++RE  RR+R V +EA R     + L  +   RI A R   VDL GP P
Sbjct:  560 FFQSVDGQKAFLHPLDMRQLLEDAE-RGLPLPPRIDAKVLEVETVKLTPELRKRLPFLGHLPIHCDISFLEVDM---------LDLVSDETS-----RKFREDTQKRERKRRSR-VAQEA-RLKKEEARLERDRADRIAAMRAFTVDLQGPTP 695          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1049283536|ref|XP_017538211.1| (PREDICTED: RING finger protein 10 isoform X2 [Pygocentrus nattereri])

HSP 1 Score: 94.3597 bits (233), Expect = 4.579e-17
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 0
Query:   37 HFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGR 163
            +FYQ EDGQ  FL P+ +RCL+ E G      PQ +  T++E E   +T E+R R+ +L HLPL     + EL L P +LS  TL+ F  E++KR   R+++ R E+    RR R++E E  ++ G+
Sbjct:  480 YFYQAEDGQQMFLQPVNVRCLLREYGSLENS-PQSITATIVEIEGHTVTEEMRRRHRYLSHLPLTCEYSICELNLQPPILSKETLDSFTDELEKRKCLRQKKARDEK----RRERKIEMEENQKQGK 601          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|938068064|gb|KPP67580.1| (RING finger protein 10-like [Scleropages formosus])

HSP 1 Score: 93.9745 bits (232), Expect = 5.710e-17
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0
Query:   37 HFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQR 138
            +FYQ EDGQ  FLHP+ +RCLM E G   A  P     TV+E +   +T E+R R+ +L HLPL     + ELALPP LLS  TL+ F  E++KR + R+++
Sbjct:  485 YFYQAEDGQQMFLHPVNVRCLMREYGSLEAS-PASFTATVVEIDGHTVTEEIRRRHRYLSHLPLTCEFSICELALPPPLLSKETLDTFSDELEKRRRLRQKK 585          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1049283534|ref|XP_017538210.1| (PREDICTED: RING finger protein 10 isoform X1 [Pygocentrus nattereri])

HSP 1 Score: 93.9745 bits (232), Expect = 5.733e-17
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 0
Query:   37 HFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQRERAEEREAARRAREVEREAVREAGR 163
            +FYQ EDGQ  FL P+ +RCL+ E G      PQ +  T++E E   +T E+R R+ +L HLPL     + EL L P +LS  TL+ F  E++KR   R+++ R E+    RR R++E E  ++ G+
Sbjct:  480 YFYQAEDGQQMFLQPVNVRCLLREYGSLENS-PQSITATIVEIEGHTVTEEMRRRHRYLSHLPLTCEYSICELNLQPPILSKETLDSFTDELEKRKCLRQKKARDEK----RRERKIEMEENQKQGK 601          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1083277997|ref|XP_018587270.1| (PREDICTED: RING finger protein 10 [Scleropages formosus])

HSP 1 Score: 93.9745 bits (232), Expect = 6.409e-17
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0
Query:   37 HFYQLEDGQLAFLHPLTMRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKRAQRRKQR 138
            +FYQ EDGQ  FLHP+ +RCLM E G   A  P     TV+E +   +T E+R R+ +L HLPL     + ELALPP LLS  TL+ F  E++KR + R+++
Sbjct:  482 YFYQAEDGQQMFLHPVNVRCLMREYGSLEAS-PASFTATVVEIDGHTVTEEIRRRHRYLSHLPLTCEFSICELALPPPLLSKETLDTFSDELEKRRRLRQKK 582          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1205889383|gb|OWF40272.1| (RING finger protein 10 [Mizuhopecten yessoensis])

HSP 1 Score: 91.6633 bits (226), Expect = 3.335e-16
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    7 AREDKACPSSPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGG-RHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMK 129
            A E    PS P  +  PSS +  G D+ A +FYQ EDGQ  ++H L  RCL+ E G  +H   P  +  T++E E + +T +LR R  +L HLPL    ++VELA+ P +LS  TL+ F  +++
Sbjct:  459 AAEHLEMPSHPEVA-SPSSRNSGGADN-AFYFYQAEDGQHIYMHALNARCLVKEYGALQHC--PDTITATIVEMENIFITEDLRKRLRYLGHLPLTCEFQVVELAIKPPVLSKDTLKFFSDDIE 578          
BLAST of EWM21422.1 vs. NCBI_GenBank
Match: gi|1207968133|ref|XP_021374686.1| (RING finger protein 10-like [Mizuhopecten yessoensis])

HSP 1 Score: 91.6633 bits (226), Expect = 3.447e-16
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    7 AREDKACPSSPSASLGPSSLSGEGLDSQASHFYQLEDGQLAFLHPLTMRCLMAEAGG-RHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMK 129
            A E    PS P  +  PSS +  G D+ A +FYQ EDGQ  ++H L  RCL+ E G  +H   P  +  T++E E + +T +LR R  +L HLPL    ++VELA+ P +LS  TL+ F  +++
Sbjct:  467 AAEHLEMPSHPEVA-SPSSRNSGGADN-AFYFYQAEDGQHIYMHALNARCLVKEYGALQHC--PDTITATIVEMENIFITEDLRKRLRYLGHLPLTCEFQVVELAIKPPVLSKDTLKFFSDDIE 586          
The following BLAST results are available for this feature:
BLAST of EWM21422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101650|gb|EWM21422.1|0.000e+0100.00ring finger protein 10 [Nannochloropsis gaditana][more]
gi|553190931|ref|XP_005855295.1|0.000e+095.96hypothetical protein NGA_0127100 [Nannochloropsis ... [more]
gi|1173959799|gb|OQS05993.1|2.137e-1939.86hypothetical protein THRCLA_01935 [Thraustotheca c... [more]
gi|298708832|emb|CBJ30791.1|2.157e-1741.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|1049283536|ref|XP_017538211.1|4.579e-1739.37PREDICTED: RING finger protein 10 isoform X2 [Pygo... [more]
gi|938068064|gb|KPP67580.1|5.710e-1746.08RING finger protein 10-like [Scleropages formosus][more]
gi|1049283534|ref|XP_017538210.1|5.733e-1739.37PREDICTED: RING finger protein 10 isoform X1 [Pygo... [more]
gi|1083277997|ref|XP_018587270.1|6.409e-1746.08PREDICTED: RING finger protein 10 [Scleropages for... [more]
gi|1205889383|gb|OWF40272.1|3.335e-1639.52RING finger protein 10 [Mizuhopecten yessoensis][more]
gi|1207968133|ref|XP_021374686.1|3.447e-1639.52RING finger protein 10-like [Mizuhopecten yessoens... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9273rna9273Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications