EWM21437.1, cds9236 (CDS) Nannochloropsis gaditana

Overview
NameEWM21437.1
Unique Namecds9236
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:240052..240894 -

Link to JBrowse

Properties
Property NameValue
Start range240052
Start range.
Protein idEWM21437.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100307g6.2282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:240052..240894 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|585101666|gb|EWM21437.1| (hypothetical protein Naga_100307g6, partial [Nannochloropsis gaditana])

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MAGRSAKYSMGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDASHHLGHAPHHRHHHPHPPVPPPHPHMPHHMPPFPHGPPP 281
            MAGRSAKYSMGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDASHHLGHAPHHRHHHPHPPVPPPHPHMPHHMPPFPHGPPP
Sbjct:    1 MAGRSAKYSMGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDASHHLGHAPHHRHHHPHPPVPPPHPHMPHHMPPFPHGPPP 281          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|553180988|ref|XP_005853494.1| (hypothetical protein NGA_0434100, partial [Nannochloropsis gaditana CCMP526] >gi|422295568|gb|EKU22867.1| hypothetical protein NGA_0434100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 479.559 bits (1233), Expect = 2.549e-170
Identity = 234/235 (99.57%), Postives = 234/235 (99.57%), Query Frame = 0
Query:   10 MGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDASH 244
            MGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDAS 
Sbjct:    1 MGRRDEAPFLYGSMPPPPHAGAPPPYASGYEGSPGNNFGVPPDGSGSPPPPSPLAAPRRSPGGDVKSTPPPMPAILNADDQGGVSAASNGIGADEGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGKDGEDASR 235          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|1200678304|gb|OUX73164.1| (hypothetical protein CBC49_12220, partial [Alphaproteobacteria bacterium TMED89])

HSP 1 Score: 126.331 bits (316), Expect = 1.708e-32
Identity = 64/106 (60.38%), Postives = 72/106 (67.92%), Query Frame = 0
Query:  141 YEELINFPRAKDKDDMR-CVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDA----------AKCDKCRERGRQSYLAKK 235
            Y+EL+NF RAKDK  +R CVMCG   GE C IP QNKDVCKDCD   W+HA T  YF+WCKGCKKFL + SF+ KL            AKCD CR RGRQSYL K+
Sbjct:   43 YDELVNFDRAKDKKSVRRCVMCGKHSGE-CCIPLQNKDVCKDCDSECWRHAPTGTYFRWCKGCKKFLHVVSFAAKLHEVGLSALDKAPAKCDSCRARGRQSYLMKR 147          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|676387311|ref|XP_009036934.1| (hypothetical protein AURANDRAFT_71640 [Aureococcus anophagefferens] >gi|323452327|gb|EGB08201.1| hypothetical protein AURANDRAFT_71640 [Aureococcus anophagefferens])

HSP 1 Score: 108.612 bits (270), Expect = 8.039e-23
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = 0
Query:  138 APMYEELINF-PRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKL----DAAKCDKCRERGRQSYLAKKGKDG 239
             P Y  L+NF PRA  +    CVMCG    E  ++P+QNKDVC++CDKATW+HA T  YFKWCKGCK F  + +F++      +A+KCDKCR R R  Y  K+GKD 
Sbjct:  262 VPSYCALVNFGPRALPRVGAHCVMCGR---EGVLMPKQNKDVCRECDKATWKHAATGCYFKWCKGCKNFHAIDAFAEAFADMRNASKCDKCRRRSRNCY--KRGKDA 363          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|223999067|ref|XP_002289206.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974414|gb|EED92743.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.5001 bits (210), Expect = 4.497e-15
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0
Query:  170 VIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKGK 237
            +IPRQNK++C  CD   W   D  +  KWCKGCK F + +SF +K  A KC KCRER ++ Y ++KG+
Sbjct:  667 IIPRQNKELCTSCDVKVWLVRDLNLTIKWCKGCKNFRQWASFGEKSRATKCTKCRERQKEKYASQKGE 734          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|397617822|gb|EJK64626.1| (hypothetical protein THAOC_14623 [Thalassiosira oceanica])

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-13
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 0
Query:  137 EAPMYEELINFPRAKDKDDMRCVMCGLPPGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKK 235
            E P ++ L NFP ++ +   RCVMC         IP+QNK VC +CD A W H  + +  KWCKGCK F K S F  K  ++K ++CR++  + Y   K
Sbjct:  271 EMPPFKALENFPSSRAQG--RCVMCD---SAEFNIPKQNKGVCNNCDIAIWVHNPSGLLLKWCKGCKNFRKWSDFGLKGHSSKTERCRQQQAERYARSK 364          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|1210529266|dbj|GAX12108.1| (hypothetical protein FisN_15Lh199 [Fistulifera solaris])

HSP 1 Score: 75.8702 bits (185), Expect = 8.354e-12
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 0
Query:  138 APMYEELINFPRAKDK-------DDMRC-VMCG--------------------LP-PGEHC--------VIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSY-LAKKGKD 238
             P +  L+NFP    +       D MRC VMCG                    LP   EH         +IP QNK +C  CD   W    + +  KWCKGCK F   ++F  K  A KC +CRER R+ Y L K+ KD
Sbjct:  705 VPEFTSLVNFPSHMSQKQAVNLPDGMRCCVMCGQACPCSTGNKGKKGKSKEGGLPNQNEHLSDKNSGYAIIPSQNKGLCTHCDVNVWVVVTSGLEIKWCKGCKNFRPWAAFGDKGLATKCLRCRERQREKYALQKEEKD 843          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|1210528523|dbj|GAX12720.1| (hypothetical protein FisN_15Hh199 [Fistulifera solaris])

HSP 1 Score: 75.8702 bits (185), Expect = 8.396e-12
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 0
Query:  138 APMYEELINFPRAKDK-------DDMRC-VMCG--------------------LP-PGEHC--------VIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSY-LAKKGKD 238
             P +  L+NFP    +       D MRC VMCG                    LP   EH         +IP QNK +C  CD   W    + +  KWCKGCK F   ++F  K  A KC +CRER R+ Y L K+ KD
Sbjct:  720 VPEFTSLVNFPSHMSQKQAVNLPDGMRCCVMCGQACPCSTGNKGKKGKSKEGGLPNQNEHLSDKNSGYAIIPSQNKGLCTHCDVNVWVVVTSGLEIKWCKGCKNFRPWAAFGDKGLATKCLRCRERQREKYALQKEEKD 858          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|1072234272|gb|OEU19002.1| (hypothetical protein FRACYDRAFT_237294 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.7146 bits (182), Expect = 2.400e-11
Identity = 44/143 (30.77%), Postives = 59/143 (41.26%), Query Frame = 0
Query:  133 LTKKEAPMYEELINFPRAKDK-------DDMRC-VMCGLP--------------------------------PGEHCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKK 235
            L     P +  L+NFP    +       + MRC VMCG                                   G + +IP QNK +C  CD   W  A++ +  KWCKGCK F   ++F  K  A KC +CRER R+ Y  +K
Sbjct:  887 LKGATVPEFTSLVNFPVHMSQKQAVNLPEGMRCCVMCGSACPCSNGNKKKCNGPLGGKKDSRSANGQNMAGDKGGYAIIPTQNKGLCTLCDVNVWVVANSGLEIKWCKGCKNFRPWAAFGDKGLATKCLRCRERQREKYALQK 1029          
BLAST of EWM21437.1 vs. NCBI_GenBank
Match: gi|1210530213|dbj|GAX11129.1| (hypothetical protein FisN_9Hh221 [Fistulifera solaris])

HSP 1 Score: 73.1738 bits (178), Expect = 4.523e-11
Identity = 47/133 (35.34%), Postives = 57/133 (42.86%), Query Frame = 0
Query:  139 PMYEELINFPR-----------AKDKDDMRCVMCG-LPP------------------GEHCVIPRQNKDVCKDCDKATWQHAD------TQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKK 235
            P + +L+NFP            A       CVMCG L P                  G   +IPRQNK VC  CD A W  A       T +  KWCKGCK F   ++F  K  A KC +CR R ++ Y A K
Sbjct:  333 PEFSQLVNFPDYLARGREGKTGAAATGQKNCVMCGKLRPCSASTMNRRGSTDGGEDDGAMHIIPRQNKGVCTACDVAVWAVAGAKLEDGTPIEIKWCKGCKNFRPWAAFGDKGMATKCVRCRTRQKEKYAAAK 465          
The following BLAST results are available for this feature:
BLAST of EWM21437.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101666|gb|EWM21437.1|0.000e+0100.00hypothetical protein Naga_100307g6, partial [Nanno... [more]
gi|553180988|ref|XP_005853494.1|2.549e-17099.57hypothetical protein NGA_0434100, partial [Nannoch... [more]
gi|1200678304|gb|OUX73164.1|1.708e-3260.38hypothetical protein CBC49_12220, partial [Alphapr... [more]
gi|676387311|ref|XP_009036934.1|8.039e-2351.40hypothetical protein AURANDRAFT_71640 [Aureococcus... [more]
gi|223999067|ref|XP_002289206.1|4.497e-1548.53predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397617822|gb|EJK64626.1|1.148e-1340.40hypothetical protein THAOC_14623 [Thalassiosira oc... [more]
gi|1210529266|dbj|GAX12108.1|8.354e-1235.25hypothetical protein FisN_15Lh199 [Fistulifera sol... [more]
gi|1210528523|dbj|GAX12720.1|8.396e-1235.25hypothetical protein FisN_15Hh199 [Fistulifera sol... [more]
gi|1072234272|gb|OEU19002.1|2.400e-1130.77hypothetical protein FRACYDRAFT_237294 [Fragilario... [more]
gi|1210530213|dbj|GAX11129.1|4.523e-1135.34hypothetical protein FisN_9Hh221 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9266rna9266Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications