EWM21453.1, cds9233 (CDS) Nannochloropsis gaditana

Overview
NameEWM21453.1
Unique Namecds9233
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:232874..233185 -
Alignment locationKK037252.1:232546..232768 -
Alignment locationKK037252.1:232334..232368 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21453.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g4.475.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:232874..233185 -
KK037252.1supercontigKK037252.1:232546..232768 -
KK037252.1supercontigKK037252.1:232334..232368 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|585101683|gb|EWM21453.1| (hypothetical protein Naga_100019g4 [Nannochloropsis gaditana])

HSP 1 Score: 387.497 bits (994), Expect = 2.928e-136
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MPISCLALAMTRITLTNSHARHALQTLRESTIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189
            MPISCLALAMTRITLTNSHARHALQTLRESTIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA
Sbjct:    1 MPISCLALAMTRITLTNSHARHALQTLRESTIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|553185855|ref|XP_005854322.1| (hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526] >gi|553188713|ref|XP_005854850.1| hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >gi|422294204|gb|EKU21504.1| hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >gi|422294737|gb|EKU22037.1| hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 123.25 bits (308), Expect = 2.022e-32
Identity = 61/153 (39.87%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   37 DDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189
            DDK +++   WY    +S+AYV+ A+  A+     ET        FAAIWSML+L  I+IGGT+   R++TP+ATGV LG   M+SQ++L+LF IF   ++ +    E+ +  A A FAFFL +++ VFS+ L  +R Y+   +   + +SYA
Sbjct:    5 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 157          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|585112693|gb|EWM30061.1| (hypothetical protein Naga_100170g6 [Nannochloropsis gaditana])

HSP 1 Score: 123.25 bits (308), Expect = 4.332e-32
Identity = 61/153 (39.87%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   37 DDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189
            DDK +++   WY    +S+AYV+ A+  A+     ET        FAAIWSML+L  I+IGGT+   R++TP+ATGV LG   M+SQ++L+LF IF   ++ +    E+ +  A A FAFFL +++ VFS+ L  +R Y+   +   + +SYA
Sbjct:   41 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|635370030|emb|CCI41851.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 97.0561 bits (240), Expect = 8.729e-22
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 0
Query:   33 KMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVG---LAQT-----SSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAEN 186
            ++  ++ R ++ YLW+   ++   Y + AI AA         + + + GFA IW+M+++  + +GGT+ M++ +TP+A G F+G  IM S     L  +FVG   LA+      +  D    +N A AVF+FF+F LY +F   L   R  VI + P+  E 
Sbjct:   13 RLCGENPRLLVTYLWFSTLVVGFMYAITAIVAAVENSG-RNLSDSKSLGFAGIWAMILMIGLSVGGTLVMRKFQTPLAVGFFIGVVIMMSFQMFSLTVLFVGESYLAKEERTLFNKTDTNIHTNEAAAVFSFFMFTLYAIFGAVLVKHRSIVIREVPSTTEK 173          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|298710050|emb|CBJ31767.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.3521 bits (220), Expect = 1.773e-19
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   52 LLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVI-------DDAPAP 183
            ++ +A++    +AA +  D      + + GFAA+W++L+L  + +GG++ M++ +T +A G FLG  I+ SQ  L+LFA+F G A T+    E+ ++ A A F FFL+I+Y+ F+  L  FR  +I       +D P P
Sbjct:    1 MVMVAFICACASAAHSDGD-----GSASLGFAAVWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVIIMSQTMLVLFAVFAGRASTAEDVDEKPADRAFAAFCFFLWIVYSTFAGMLAVFREDIIMDDTTKYEDDPVP 134          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|325190846|emb|CCA25334.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.1225 bits (222), Expect = 1.500e-18
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 0
Query:   24 LQTLRE--STIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAA--NQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVG---LAQT-----SSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDD 179
            L T+ E     ++  ++ R ++ YLW+   ++   Y + AI AA   N  +L   + + + GFA IW+M+++  + +GGT+ M++ +TP+A G F+G  IM S     L  +FVG   LA+      ++ D    +N A AVF+FF+F LY +F   L   R  VI +
Sbjct:   81 LPTIHEIKEKARLCGENPRLLVTYLWFSTLVVGFMYAITAIVAAVYNNGHNL---SDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHRSIVIKE 245          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|325189148|emb|CCA23673.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.1225 bits (222), Expect = 1.750e-18
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 0
Query:   24 LQTLRE--STIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAA--NQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVG---LAQT-----SSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDD 179
            L T+ E     ++  ++ R ++ YLW+   ++   Y + AI AA   N  +L   + + + GFA IW+M+++  + +GGT+ M++ +TP+A G F+G  IM S     L  +FVG   LA+      ++ D    +N A AVF+FF+F LY +F   L   R  VI +
Sbjct:   91 LPTIHEIKEKARLCGENPRLLVTYLWFSTLVVGFMYAITAIVAAVYNNGHNL---SDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHRSIVIKE 255          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|695391610|ref|XP_009520078.1| (hypothetical protein PHYSODRAFT_484403 [Phytophthora sojae] >gi|348684975|gb|EGZ24790.1| hypothetical protein PHYSODRAFT_484403 [Phytophthora sojae])

HSP 1 Score: 86.2705 bits (212), Expect = 1.629e-17
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 0
Query:   30 STIKMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLA-----QTSSGD--VERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDA 180
            S  +   ++ + +I YLW+   L    Y + AI AA    D E  + + + GF  +W+M+++  + +GGT+ M++ +TP+A G  +G  +M S     L  IF G A     + + GD      SN A +VF+FF+FILY VF++ L   R+ VI + 
Sbjct:    6 SKARKCINNPKMLITYLWFSTMLFGFMYAIAAIVAAV-NNDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFAIVLVRHRNIVIKEG 162          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|698786974|ref|XP_009826519.1| (hypothetical protein H257_03912 [Aphanomyces astaci] >gi|698786976|ref|XP_009826520.1| hypothetical protein, variant [Aphanomyces astaci] >gi|574119347|gb|ETV84827.1| hypothetical protein H257_03912 [Aphanomyces astaci] >gi|574119348|gb|ETV84828.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 85.5001 bits (210), Expect = 2.554e-17
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   33 KMVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLA----QTSSGDVER-------RSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDA 180
            K  C + + VI YLW++    ++ + + A+  AAN    +    + + GFA IW M ++  + IGGT+ M++ +TPIA G F+G  IM S     L  +  G A    ++++G +          S+ A AVF+FF+F+LY  F+V L   R  +I D 
Sbjct:   12 KACCANPKLVITYLWFIILFFAVMFSLGAMVFAANNNG-DGPQYSKSLGFAGIWMMFLVIALSIGGTMVMRKYQTPIAVGFFIGVVIMMSFNMFSLSVLCAGAAYLAKRSNNGTLNDGNWKGPVHSDEASAVFSFFMFVLYFAFAVVLVKHRAVIIKDG 169          
BLAST of EWM21453.1 vs. NCBI_GenBank
Match: gi|675202041|ref|XP_008909905.1| (hypothetical protein PPTG_14695 [Phytophthora parasitica INRA-310] >gi|567996913|gb|ETL47009.1| hypothetical protein L916_03204 [Phytophthora parasitica] >gi|568026111|gb|ETM00108.1| hypothetical protein L917_03137 [Phytophthora parasitica] >gi|568090131|gb|ETN04968.1| hypothetical protein PPTG_14695 [Phytophthora parasitica INRA-310] >gi|570994409|gb|ETP51545.1| hypothetical protein F442_03341 [Phytophthora parasitica P10297])

HSP 1 Score: 82.8037 bits (203), Expect = 3.185e-16
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 0
Query:   37 DDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLA-----QTSSGD--VERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDA 180
            ++ + +I YLW++  L    Y + AI AA    D E  + + + GF  +W+M+++  + +GGT+ M++ +TP+A G  +G  +M S     L  IF G A     + + GD      SN A +VF+FF+F+ Y  F++ L   R+ VI + 
Sbjct:   17 NNPKMLITYLWFVTMLFGFMYAIAAIVAAV-NNDGEGESDSKSLGFVGVWAMILIIALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFVCYLAFTIVLVRHRNIVIKEG 166          
The following BLAST results are available for this feature:
BLAST of EWM21453.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101683|gb|EWM21453.1|2.928e-136100.00hypothetical protein Naga_100019g4 [Nannochloropsi... [more]
gi|553185855|ref|XP_005854322.1|2.022e-3239.87hypothetical protein NGA_0208701 [Nannochloropsis ... [more]
gi|585112693|gb|EWM30061.1|4.332e-3239.87hypothetical protein Naga_100170g6 [Nannochloropsi... [more]
gi|635370030|emb|CCI41851.1|8.729e-2232.10unnamed protein product [Albugo candida][more]
gi|298710050|emb|CBJ31767.1|1.773e-1934.53conserved unknown protein [Ectocarpus siliculosus][more]
gi|325190846|emb|CCA25334.1|1.500e-1832.74conserved hypothetical protein [Albugo laibachii N... [more]
gi|325189148|emb|CCA23673.1|1.750e-1832.74conserved hypothetical protein [Albugo laibachii N... [more]
gi|695391610|ref|XP_009520078.1|1.629e-1732.91hypothetical protein PHYSODRAFT_484403 [Phytophtho... [more]
gi|698786974|ref|XP_009826519.1|2.554e-1732.70hypothetical protein H257_03912 [Aphanomyces astac... [more]
gi|675202041|ref|XP_008909905.1|3.185e-1631.79hypothetical protein PPTG_14695 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9263rna9263Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications