EWM21466.1, cds9209 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|585101696|gb|EWM21466.1| (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 215.312 bits (547), Expect = 9.335e-71 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 Query: 1 MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT 111 MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT Sbjct: 1 MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT 111
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|294954218|ref|XP_002788058.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239903273|gb|EER19854.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]) HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-14 Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0 Query: 23 LRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVE 97 L LL LR+TL+DGR +TGR C+D+ N++LR A ERR + G++S R +G+VM+PGK V++E Sbjct: 13 LSSLLHKPLRITLTDGREITGRLYCIDDKKNIVLRNAVERRKGNEVTPLTIGLKSSSTRSIGMVMIPGKDAVKIE 87
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682270808|gb|KFX94860.1| (hypothetical protein O988_06110 [Pseudogymnoascus sp. VKM F-3808]) HSP 1 Score: 67.0106 bits (162), Expect = 5.065e-12 Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 16 SLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 ++ AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+HVV++E++ Sbjct: 5 NVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|684157876|ref|XP_009152816.1| (hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis NIH/UT8656] >gi|378725896|gb|EHY52355.1| hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis NIH/UT8656]) HSP 1 Score: 66.2402 bits (160), Expect = 8.143e-12 Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQV-----------RHLGLVMLPGKHVVRVEVKGR 101 A L LLG L VT+SDGR TGR+QC D N+IL A E R + +++ A ++ V+ R +GL+++PGK ++++EV+ + Sbjct: 6 ATQFLESLLGKTLHVTVSDGRLFTGRFQCTDSDSNIILSNAFEYR-VPSKSTEKAAIDEVKATGRPIKADMTSRFVGLIVIPGKQIMKMEVEEK 98
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682346009|gb|KFY39233.1| (hypothetical protein V495_06071 [Pseudogymnoascus sp. VKM F-4514 (FW-929)] >gi|682368983|gb|KFY54662.1| hypothetical protein V497_07526 [Pseudogymnoascus sp. VKM F-4516 (FW-969)]) HSP 1 Score: 66.6254 bits (161), Expect = 8.407e-12 Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0 Query: 19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+HVV++E++ Sbjct: 8 AKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682262439|gb|KFX89480.1| (hypothetical protein V490_06994 [Pseudogymnoascus sp. VKM F-3557]) HSP 1 Score: 66.2402 bits (160), Expect = 1.162e-11 Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0 Query: 19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+HVV++E++ Sbjct: 8 AKDYLNGLLNKSLRVTTTDKRMFLGDFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|1040525087|gb|OBT62178.1| (hypothetical protein VE03_08363 [Pseudogymnoascus sp. 23342-1-I1]) HSP 1 Score: 65.855 bits (159), Expect = 1.788e-11 Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 0 Query: 13 GVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 ++ AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+HV ++E++ Sbjct: 2 ATSNVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVTKIELE 93
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|629637634|ref|XP_007787463.1| (hypothetical protein EPUS_08862 [Endocarpon pusillum Z07020] >gi|539439670|gb|ERF75192.1| hypothetical protein EPUS_08862 [Endocarpon pusillum Z07020]) HSP 1 Score: 65.0846 bits (157), Expect = 1.881e-11 Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 0 Query: 14 VDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARA----------GVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEV 106 +D+ A L L+ R SDGR G ++C D N+IL + E R A+A G G+G + R LGLV++PG+H+ ++EV+ R P E+ Sbjct: 1 MDNDSAVKYLESLVNRTFRAHTSDGRMFLGEFKCTDNESNIILAKTYEYRMPTAKAKQDAIERQLAGEGSGKADMTSRFLGLVVVPGQHITKLEVEERKPWEL 103
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682358483|gb|KFY47512.1| (hypothetical protein V496_10629 [Pseudogymnoascus sp. VKM F-4515 (FW-2607)] >gi|682431272|gb|KFY97148.1| hypothetical protein V498_02217 [Pseudogymnoascus sp. VKM F-4517 (FW-2822)]) HSP 1 Score: 65.4698 bits (158), Expect = 2.470e-11 Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 0 Query: 13 GVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 ++ AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+HV ++E++ Sbjct: 2 ATSNVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGAGSVTLEMTSRYLGLVVVPGEHVTKIELE 93
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682316577|gb|KFY21364.1| (hypothetical protein V493_07478 [Pseudogymnoascus sp. VKM F-4281 (FW-2241)]) HSP 1 Score: 65.0846 bits (157), Expect = 2.698e-11 Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 0 Query: 19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99 AK L GLL +LRVT +D R G ++C D N+IL E R + +G G+ + R+LGLV++PG+H+ ++E++ Sbjct: 8 AKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHITKIELE 93 The following BLAST results are available for this feature:
BLAST of EWM21466.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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