EWM21499.1, cds9206 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|585101729|gb|EWM21499.1| (endonuclease exonuclease phosphatase family [Nannochloropsis gaditana]) HSP 1 Score: 1308.51 bits (3385), Expect = 0.000e+0 Identity = 639/639 (100.00%), Postives = 639/639 (100.00%), Query Frame = 0
Query: 1 MKVELKPKISVTFYEGVGKGSLLVVHLRMLVSLGHLKAPLSGAGLITLSPVRKEGIALQARLPNCRLASTTSRGKMSAMSTADENLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSAGTKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQHLAGVRLVAEIGRSSVEGANLGSMERVLAFATGIVTAGSGADKRLVEGLGDVLGNVLEEVFGGQIAIEYRDNVWRQEPFSGREQEGGGGGGRRQGFATRKRARGRLKREVFHLLLVLESTSGCRLGADMLLEDLRQFQNHTNGKPDGSGDHNGDRHFEKEGEQRRVCSELASTLRKCQAAGACVDEHTLDQLVMYMALAQGTSRVLGPPRSFLSSNHVATAIRITEQLLGVSFKMWSDKSYGPLTVEIAQGHAFTLET 639
MKVELKPKISVTFYEGVGKGSLLVVHLRMLVSLGHLKAPLSGAGLITLSPVRKEGIALQARLPNCRLASTTSRGKMSAMSTADENLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSAGTKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQHLAGVRLVAEIGRSSVEGANLGSMERVLAFATGIVTAGSGADKRLVEGLGDVLGNVLEEVFGGQIAIEYRDNVWRQEPFSGREQEGGGGGGRRQGFATRKRARGRLKREVFHLLLVLESTSGCRLGADMLLEDLRQFQNHTNGKPDGSGDHNGDRHFEKEGEQRRVCSELASTLRKCQAAGACVDEHTLDQLVMYMALAQGTSRVLGPPRSFLSSNHVATAIRITEQLLGVSFKMWSDKSYGPLTVEIAQGHAFTLET
Sbjct: 1 MKVELKPKISVTFYEGVGKGSLLVVHLRMLVSLGHLKAPLSGAGLITLSPVRKEGIALQARLPNCRLASTTSRGKMSAMSTADENLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSAGTKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQHLAGVRLVAEIGRSSVEGANLGSMERVLAFATGIVTAGSGADKRLVEGLGDVLGNVLEEVFGGQIAIEYRDNVWRQEPFSGREQEGGGGGGRRQGFATRKRARGRLKREVFHLLLVLESTSGCRLGADMLLEDLRQFQNHTNGKPDGSGDHNGDRHFEKEGEQRRVCSELASTLRKCQAAGACVDEHTLDQLVMYMALAQGTSRVLGPPRSFLSSNHVATAIRITEQLLGVSFKMWSDKSYGPLTVEIAQGHAFTLET 639
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|553196117|ref|XP_005856273.1| (endonuclease exonuclease phosphatase family, partial [Nannochloropsis gaditana CCMP526] >gi|422292787|gb|EKU20089.1| endonuclease exonuclease phosphatase family, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0 Identity = 340/346 (98.27%), Postives = 342/346 (98.84%), Query Frame = 0
Query: 36 LKAPLSGAGLITLSPVRKEGIALQARLPNCRLASTTSRGKMSAMSTADENLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSAGTKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQ 381
+KAPLSGAGLITLSPVR+EGIALQARLPNCRLASTTSRG MSAMSTAD NLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAE FPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSA TKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQ
Sbjct: 1 MKAPLSGAGLITLSPVRQEGIALQARLPNCRLASTTSRGTMSAMSTADGNLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEAFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPRHAGATVADQGFFRLSADTKNATPPARINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQ 346
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|551661998|ref|XP_005833765.1| (hypothetical protein GUITHDRAFT_51502, partial [Guillardia theta CCMP2712] >gi|428177907|gb|EKX46785.1| hypothetical protein GUITHDRAFT_51502, partial [Guillardia theta CCMP2712]) HSP 1 Score: 129.028 bits (323), Expect = 8.390e-31 Identity = 82/196 (41.84%), Postives = 107/196 (54.59%), Query Frame = 0
Query: 97 QSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEA---RLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRL 289
QSAL L+P D L+ ++Q IR HDK + RWPPHVN++YPFVPE+EF VAA ++AL ++A M F+H + S T WL P++ + A R EEE A + QL A PHC D A F RF PHLS+GQ++ +G W F V +YL+AR+G DPF V Y V L
Sbjct: 2 QSALCLIPPGD--LWPSMQEIRSVHDKSFLRWPPHVNVLYPFVPEHEFPVAAARAEQALRRMKPF-TVSLASMSSFQHSKYSHTLWLKPEDGAAEKQEQAGARGEEEDAP------LQQLYRLLLQAFPHCDDSIARF-QRFVPHLSLGQWKTLEGPPIAQLEASWEKSSFLVSHVYLIARSGFHDPFRVVYAVPL 187
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|971514639|dbj|GAQ83573.1| (RNA ligase/cyclic nucleotide phosphodiesterase [Klebsormidium nitens]) HSP 1 Score: 119.013 bits (297), Expect = 6.446e-25 Identity = 86/256 (33.59%), Postives = 126/256 (49.22%), Query Frame = 0
Query: 93 RKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEY--EFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRK----GAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGTLPR-------HAGATVADQGFFRLSAGTKNATPPARINPAE 335
+KVH+SA+ ++P + L+ IQ IRR HDKHY+RW PH+N+IYPF + F VAA LSS ++ YF+H R SCT WL P +A A+L+ LQAA Q A P C +L+ + F PHLS+GQ+++++ G + F D+ W F +++++L++R DPF R + L E G P+ A T D GT+N + P + AE
Sbjct: 27 QKVHKSAICIVPPEE--LWGPIQDIRRVHDKHYKRWMPHINLIYPFWVDEGDNFQVAAERAVAKLSSIQPF-QLSLKAFNYFQHNR-SCTMWLDPTDA---TAQLQ---------------TLQAALQEAFPKCTELS-TISDSFKPHLSVGQWRNKRETEEGMRAFGDT--WPGLEFTLKEVFLISRADFDDPFHKRSAIPLG------AEVGASPKLLWTPATSASGTGTDSTNKSNGTGTRNGSGPRNAHGAE 251
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|825293573|ref|WP_047134789.1| (hypothetical protein [Candidatus Kryptonium thompsoni] >gi|951281785|emb|CUS87133.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|951283035|emb|CUT06629.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|962434835|emb|CUU04673.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980054516|emb|CUS93095.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980136018|emb|CUS83791.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980144335|emb|CUS94144.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980168329|emb|CUT04288.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980208252|emb|CUS83070.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980233699|emb|CUS77983.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni] >gi|980249307|emb|CUS91486.1| 2'-5' RNA ligase [Candidatus Kryptonium thompsoni]) HSP 1 Score: 110.538 bits (275), Expect = 2.710e-24 Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 0
Query: 91 SGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFD---VAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSV--DWVAEVFPVRQLYLLARNGPTD 279
+ +K H++A+ ++P D ++ IQ IR +D+ +RRW PH+ +IYPF P EF+ V + + + SF V + + +F+H + S T WLAPQ P I++LQ QA +P C D+ F G FTPHLSIGQ + + K+ + + W F V ++ + R+ P D
Sbjct: 5 NAKKTHKTAVVIIPPED--VWDPIQKIREKYDRQFRRWMPHITLIYPFRPFEEFERVYVEFENVCRGIKSFEV----ELVEIRFFQHYKESYTMWLAPQ-------------------PFDEIVKLQERLQAIVPDCDDVR-RFEGGFTPHLSIGQVKGKDKLKNLLRELQSSWKPVKFNVSSIFFIWRDDPPD 172
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|1124743020|ref|WP_075005652.1| (endonuclease [Stigmatella aurantiaca] >gi|1095363008|emb|SEK89771.1| poly(A) polymerase [Stigmatella aurantiaca]) HSP 1 Score: 119.398 bits (298), Expect = 3.294e-24 Identity = 78/221 (35.29%), Postives = 113/221 (51.13%), Query Frame = 0
Query: 86 LSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSV-----DWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGSVTRVEPGT 301
LS S VH+SA+ L+P + +Q++R HD++Y+RW PHV ++YPF+PE F A ++++AL S T+ +FEH R+S TAWL P++ PH + LQAA +AA+PHC + FTPHLS+GQ R D ++ DW F VR++ L++R G PF+VR V L G +P T
Sbjct: 408 LSRALSAAPVHESAVVLIPP--EGQWGPLQALRAQHDRNYQRWMPHVTLLYPFIPEEHFLEAEALIEEALRSVTPF-QVTLTGFDFFEH-RASVTAWLQPED-----------------QPHGALKSLQAALEAALPHCDEQGRKSERGFTPHLSVGQLP-RSAPADIRQTLSTWEQDWRPLSFEVREVCLISRRG-NGPFAVRRRVALGGARHPTAQPHT 605
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|1127356877|gb|APR78280.1| (endonuclease/exonuclease/phosphatase family protein [Minicystis rosea]) HSP 1 Score: 113.235 bits (282), Expect = 3.600e-24 Identity = 85/229 (37.12%), Postives = 115/229 (50.22%), Query Frame = 0
Query: 61 RLPNCRLASTTSRGKMSAMSTADENLSDFFSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKAL---SSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDS--VDWVAEVFPVRQLYLLARNGPTDPFSVR 284
RLP R AST + + VH+SALAL+P D ++ IQ+IR HD+H RW PHVN++Y FVPE F A + + AL S+F V T+A F+H R+S T WL P+ SD P ++ LQA +A P C + + FTPHLSI Q + A+ + + +W VFPVR + LLAR+G +PFSVR
Sbjct: 87 RLPRARPASTERAAE----------------AKPVHRSALALVPPED--VWAPIQAIRVRHDRHVERWMPHVNLLYGFVPESLFAEAKKTIAAALRAQSAFTV----TLAEFRRFDH-RASSTVWLRPE----SD-------------PENALVTLQAMLEALFPRCNEQSRISASGFTPHLSIAQARGAHEAEVHMAAWQAEWQPIVFPVRSVELLARSG-EEPFSVR 274
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|1121309539|ref|WP_073620943.1| (poly(A) polymerase [Calothrix sp. HK-06] >gi|1115284408|gb|OKH47550.1| poly(A) polymerase [Calothrix sp. HK-06]) HSP 1 Score: 118.627 bits (296), Expect = 5.595e-24 Identity = 73/214 (34.11%), Postives = 108/214 (50.47%), Query Frame = 0
Query: 95 VHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAGGS-----VTRVEPGTLP 303
++QSA+ ++P D + AIQ IR+ +D + RW PH+N+IY F+PE FD A +++ ALS T+ G F H R SCTAWL P L L HE LQ Q P C + + G FTPHLS+GQF + + A+ + W F V + L++R G PF +++I+ L GG+ + +++P P
Sbjct: 390 IYQSAIVIIPPDD--VLPAIQEIRQKYDARFERWMPHINLIYGFLPESYFDEAVKIISPALSKLEPF-TITLTEYGTFTH-RKSCTAWLRPVVETLHVTSL-HE--------------LQTVLQNLFPQCDEQSKKSGKGFTPHLSVGQFLNPEIARSMLPQ--WRPISFTVNSVALISRRG-DKPFEIKHIIPLGGGNELQKIINQLQPELTP 581
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|1183366705|gb|ORX92941.1| (LigT-like protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 109.383 bits (272), Expect = 1.021e-23 Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 0
Query: 92 GRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEF-DVAARVLQKALSSFAVIDDCTMARMGYFEHGRSSCTAWLAPQEARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDW-VAEVFP----VRQLYLLARNGPTDPFSVRYIVRLAG 291
G +SA+ ++P +++ IQ IR++HDKH +RWPPH+N++YPF+P F + A L +ALS+ + R +F+H R+S T WL P ++ EE LA+ L+ A+ P + + G+F PHLS+GQF+ ++ + + +D +E P V + L+AR G DPF V + + L G
Sbjct: 6 GTLTFKSAVCIIPP--KAIWDQIQEIRQAHDKHVKRWPPHINLLYPFLPYENFSETALPTLTRALSTIRPF-SIRLGRFSWFQHSRNSFTVWLKPADSP--------EESLAN---------LERKLAASFPELGEQMRTGKGQFVPHLSVGQFKTKEQVESLVAEMDERFSESHPLEFEVTSVQLIARFGYHDPFRVIHDIPLGG 191
BLAST of EWM21499.1 vs. NCBI_GenBank
Match: gi|780176162|ref|XP_011661366.1| (PREDICTED: RNA 3'-terminal phosphate cyclase-like [Strongylocentrotus purpuratus]) HSP 1 Score: 112.079 bits (279), Expect = 2.528e-23 Identity = 105/336 (31.25%), Postives = 150/336 (44.64%), Query Frame = 0
Query: 338 VDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQHLAGVRLVAEIGRSSVEGANLGSMERVLAFATGIVTAGSGADKRLVEGLGDVLGNV--------LEEVF---GGQIAIEYRDNVWRQEPFSGREQEGGGGGGRRQ-----------------GFATRKRAR----GRLKREVFHLLLVLEST--SGCRLGADMLLEDLRQFQNHTNGKPDG-------------SGDHNGDRHFEKEGEQRRVCSELASTLRKCQAAGACVDEHTLDQLVMYMALAQGTSRVLGPPRSFLSSNHVATAIRITEQLLGVSFKMWSDKSYGPLT 626
VDGSL EGGGQ+LR + ALS L +K + +++IR+ RSKPGL+PQHL+GV+LV+ + +++G +GS E + F G + AG G+ D N + VF + I+Y + R+ F GGG Q G TR R R G L R++ ++ S+ G D+ +E +++ G G +G G R + E R EL L+ G CVDE+ DQL+++MALA+G SRV R+ + H TAI I E L F S PLT
Sbjct: 9 VDGSLKEGGGQILRIATALSCLCKKPITVNNIRANRSKPGLRPQHLSGVQLVSRVCGGALKGDAVGSSE--ITFTPGTIAAGRYTADTGTAGIDDYGTNAEMAPQIDYMNMVFQPIAHKFGIDYDCRIVRRGYFP-------KGGGEIQVTAKPVHDLSPISLTEVGTITRVRGRAFVAGTLPRKLSQIMSNTASSVIKKAYPGVDVQVESVQEPHGAAFGNGSGIIVVAETSTGCRLAGSSLGKRGKQAEDVGREAADELLKNLQH----GGCVDEYLQDQLIIFMALAKGQSRV----RTGPITQHTETAIHIAELLTEAKF------SISPLT 321 The following BLAST results are available for this feature:
BLAST of EWM21499.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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