EWM21492.1, cds9187 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|585101722|gb|EWM21492.1| (histone 2 [Nannochloropsis gaditana]) HSP 1 Score: 312.383 bits (799), Expect = 1.392e-107 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK 157
MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK
Sbjct: 1 MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK 157
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|223993459|ref|XP_002286413.1| (histone H2A, partial [Thalassiosira pseudonana CCMP1335] >gi|220977728|gb|EED96054.1| histone H2A, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 206.068 bits (523), Expect = 6.252e-66 Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0
Query: 43 KRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKG 153
K+APQSRSS+AGLQFPVGR+HRFLK V SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+ G
Sbjct: 14 KKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTG 124
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|298710645|emb|CBJ32072.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 206.068 bits (523), Expect = 7.124e-66 Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 0
Query: 41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
+ K+APQSRSS+AGLQFPVGRIHRFLK+RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ K
Sbjct: 19 TSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNK 128
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|397635776|gb|EJK72006.1| (hypothetical protein THAOC_06502 [Thalassiosira oceanica]) HSP 1 Score: 207.608 bits (527), Expect = 8.510e-66 Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 0
Query: 43 KRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKG 153
K+APQSRSS+AGLQFPVGR+HRFLK V SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K++G
Sbjct: 66 KKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQG 176
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|1072230923|gb|OEU15656.1| (histone H2A [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 205.297 bits (521), Expect = 1.533e-65 Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0
Query: 41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK-AKGAKAK 157
+ K+APQSRSS+AGLQFPVGR+HRFLK V RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K +KG KAK
Sbjct: 19 TSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGSRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSSKGKKAK 136
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|676380045|ref|XP_009033301.1| (hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens] >gi|323456364|gb|EGB12231.1| hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens]) HSP 1 Score: 204.912 bits (520), Expect = 2.250e-65 Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 0
Query: 41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA 151
+ K+APQ++S +AGLQFPVGR+HRFLK RVT SQRVGATAAVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+
Sbjct: 19 TSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS 129
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|219122004|ref|XP_002181345.1| (histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407331|gb|EEC47268.1| histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 204.527 bits (519), Expect = 3.265e-65 Identity = 102/119 (85.71%), Postives = 108/119 (90.76%), Query Frame = 0
Query: 41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA--KGAKAK 157
+ K+APQSRSS+AGLQFPVGR+HRFLK V RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K+ KG KAK
Sbjct: 19 TSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGKGKKAK 137
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|673017346|ref|XP_008862634.1| (histone H2A.Z [Aphanomyces invadans] >gi|698776864|ref|XP_009821476.1| histone H2A.Z [Aphanomyces astaci] >gi|574123601|gb|ETV89076.1| histone H2A.Z [Aphanomyces astaci] >gi|574481837|gb|ETW08829.1| histone H2A.Z [Aphanomyces invadans]) HSP 1 Score: 202.986 bits (515), Expect = 1.597e-64 Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0
Query: 41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA 151
+ K+APQSRSSRAGLQFPVGRIHRFLK RV +QR+GATAAVYTAAI+EYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ KA
Sbjct: 24 ASKKAPQSRSSRAGLQFPVGRIHRFLKKRVANNQRIGATAAVYTAAIMEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVGKA 134
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|1173940646|gb|OQR90006.1| (histone H2A [Thraustotheca clavata]) HSP 1 Score: 201.83 bits (512), Expect = 4.827e-64 Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0
Query: 40 ASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
+ K+APQSRSSRAGLQFPVGRIHRFLK RV +QR+GATAAVYTAAI+EYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ K
Sbjct: 24 VTSKKAPQSRSSRAGLQFPVGRIHRFLKKRVANNQRIGATAAVYTAAIMEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVGK 134
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|926459283|dbj|BAS30518.1| (histone H2A-like-1 [Polyblepharides amylifera]) HSP 1 Score: 201.06 bits (510), Expect = 6.152e-64 Identity = 107/133 (80.45%), Postives = 112/133 (84.21%), Query Frame = 0
Query: 27 AGKGGKAGKGGKGASGKRA---------PQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
+GKG K G GKGA G A P SRSS+AGLQFPVGRIHRFLK+RVTT+ RVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K
Sbjct: 2 SGKGAK-GLSGKGAKGTMAGDKKGDKKKPVSRSSKAGLQFPVGRIHRFLKSRVTTNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK 133 The following BLAST results are available for this feature:
BLAST of EWM21492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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