EWM21492.1, cds9187 (CDS) Nannochloropsis gaditana

Overview
NameEWM21492.1
Unique Namecds9187
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:126997..127056 +
Alignment locationKK037252.1:127159..127266 +
Alignment locationKK037252.1:127419..127724 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21492.1
Producthistone 2
Orig transcript idgnl|cribi|Naga_100019g53.514.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:126997..127056 +
KK037252.1supercontigKK037252.1:127159..127266 +
KK037252.1supercontigKK037252.1:127419..127724 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0040029regulation of gene expression, epigenetic
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR002119Histone_H2A
Homology
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|585101722|gb|EWM21492.1| (histone 2 [Nannochloropsis gaditana])

HSP 1 Score: 312.383 bits (799), Expect = 1.392e-107
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK 157
            MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK
Sbjct:    1 MRTHLDVTGNTTTKYSYKNMSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK 157          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|223993459|ref|XP_002286413.1| (histone H2A, partial [Thalassiosira pseudonana CCMP1335] >gi|220977728|gb|EED96054.1| histone H2A, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 206.068 bits (523), Expect = 6.252e-66
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0
Query:   43 KRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKG 153
            K+APQSRSS+AGLQFPVGR+HRFLK  V  SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+ G
Sbjct:   14 KKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTG 124          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|298710645|emb|CBJ32072.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 206.068 bits (523), Expect = 7.124e-66
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 0
Query:   41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
            + K+APQSRSS+AGLQFPVGRIHRFLK+RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ K
Sbjct:   19 TSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNK 128          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|397635776|gb|EJK72006.1| (hypothetical protein THAOC_06502 [Thalassiosira oceanica])

HSP 1 Score: 207.608 bits (527), Expect = 8.510e-66
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 0
Query:   43 KRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKG 153
            K+APQSRSS+AGLQFPVGR+HRFLK  V  SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K++G
Sbjct:   66 KKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQG 176          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|1072230923|gb|OEU15656.1| (histone H2A [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 205.297 bits (521), Expect = 1.533e-65
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0
Query:   41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK-AKGAKAK 157
            + K+APQSRSS+AGLQFPVGR+HRFLK  V    RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K +KG KAK
Sbjct:   19 TSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGSRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSSKGKKAK 136          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|676380045|ref|XP_009033301.1| (hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens] >gi|323456364|gb|EGB12231.1| hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens])

HSP 1 Score: 204.912 bits (520), Expect = 2.250e-65
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 0
Query:   41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA 151
            + K+APQ++S +AGLQFPVGR+HRFLK RVT SQRVGATAAVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+
Sbjct:   19 TSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS 129          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|219122004|ref|XP_002181345.1| (histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407331|gb|EEC47268.1| histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 204.527 bits (519), Expect = 3.265e-65
Identity = 102/119 (85.71%), Postives = 108/119 (90.76%), Query Frame = 0
Query:   41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA--KGAKAK 157
            + K+APQSRSS+AGLQFPVGR+HRFLK  V    RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K+  KG KAK
Sbjct:   19 TSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGKGKKAK 137          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|673017346|ref|XP_008862634.1| (histone H2A.Z [Aphanomyces invadans] >gi|698776864|ref|XP_009821476.1| histone H2A.Z [Aphanomyces astaci] >gi|574123601|gb|ETV89076.1| histone H2A.Z [Aphanomyces astaci] >gi|574481837|gb|ETW08829.1| histone H2A.Z [Aphanomyces invadans])

HSP 1 Score: 202.986 bits (515), Expect = 1.597e-64
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0
Query:   41 SGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKA 151
            + K+APQSRSSRAGLQFPVGRIHRFLK RV  +QR+GATAAVYTAAI+EYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ KA
Sbjct:   24 ASKKAPQSRSSRAGLQFPVGRIHRFLKKRVANNQRIGATAAVYTAAIMEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVGKA 134          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|1173940646|gb|OQR90006.1| (histone H2A [Thraustotheca clavata])

HSP 1 Score: 201.83 bits (512), Expect = 4.827e-64
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0
Query:   40 ASGKRAPQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
             + K+APQSRSSRAGLQFPVGRIHRFLK RV  +QR+GATAAVYTAAI+EYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ K
Sbjct:   24 VTSKKAPQSRSSRAGLQFPVGRIHRFLKKRVANNQRIGATAAVYTAAIMEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVGK 134          
BLAST of EWM21492.1 vs. NCBI_GenBank
Match: gi|926459283|dbj|BAS30518.1| (histone H2A-like-1 [Polyblepharides amylifera])

HSP 1 Score: 201.06 bits (510), Expect = 6.152e-64
Identity = 107/133 (80.45%), Postives = 112/133 (84.21%), Query Frame = 0
Query:   27 AGKGGKAGKGGKGASGKRA---------PQSRSSRAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK 150
            +GKG K G  GKGA G  A         P SRSS+AGLQFPVGRIHRFLK+RVTT+ RVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K
Sbjct:    2 SGKGAK-GLSGKGAKGTMAGDKKGDKKKPVSRSSKAGLQFPVGRIHRFLKSRVTTNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK 133          
The following BLAST results are available for this feature:
BLAST of EWM21492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101722|gb|EWM21492.1|1.392e-107100.00histone 2 [Nannochloropsis gaditana][more]
gi|223993459|ref|XP_002286413.1|6.252e-6689.19histone H2A, partial [Thalassiosira pseudonana CCM... [more]
gi|298710645|emb|CBJ32072.1|7.124e-6689.09conserved unknown protein [Ectocarpus siliculosus][more]
gi|397635776|gb|EJK72006.1|8.510e-6689.19hypothetical protein THAOC_06502 [Thalassiosira oc... [more]
gi|1072230923|gb|OEU15656.1|1.533e-6586.44histone H2A [Fragilariopsis cylindrus CCMP1102][more]
gi|676380045|ref|XP_009033301.1|2.250e-6587.39hypothetical protein AURANDRAFT_59843 [Aureococcus... [more]
gi|219122004|ref|XP_002181345.1|3.265e-6585.71histone H2A isoform 1 [Phaeodactylum tricornutum C... [more]
gi|673017346|ref|XP_008862634.1|1.597e-6488.29histone H2A.Z [Aphanomyces invadans] >gi|698776864... [more]
gi|1173940646|gb|OQR90006.1|4.827e-6487.39histone H2A [Thraustotheca clavata][more]
gi|926459283|dbj|BAS30518.1|6.152e-6480.45histone H2A-like-1 [Polyblepharides amylifera][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9217rna9217Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications