EWM21490.1, cds9177 (CDS) Nannochloropsis gaditana

Overview
NameEWM21490.1
Unique Namecds9177
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:107865..108478 -
Alignment locationKK037252.1:106702..107791 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21490.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g63.512.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:107865..108478 -
KK037252.1supercontigKK037252.1:106702..107791 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0030246carbohydrate binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001079Galectin_CRD
IPR012677Nucleotide-bd_a/b_plait
IPR013320ConA-like_dom
Homology
[Close]
BLAST of EWM21490.1 vs. NCBI_GenBank
Match: gi|585101720|gb|EWM21490.1| (hypothetical protein Naga_100019g63 [Nannochloropsis gaditana])

HSP 1 Score: 1153.27 bits (2982), Expect = 0.000e+0
Identity = 567/567 (100.00%), Postives = 567/567 (100.00%), Query Frame = 0 
Query:    1 MMGDGSGRVGARRSNVVSLQSRRKQEMSEDLKPGVLTGEGWGKAPSQEEGAREGHATSGRAGPRTPGSGGAQNEKMQTEHAGTRSNISVSLDTLSKRPKQADDFVIPKKAKLVACDEGALISDIGQHSDAFGSTRSLASSAVSQGGGLLEHEGTRAGKEIGAVFVEGKSLDRARFPTQWLARGALEEWDSRQAEGPLVMPLKDFGITPESGKKKVLALRMTVASTAKRFTINICPGPLAPEEGQEVAPKDVIAHFNPRRIYKNGSLVYNARYENRWIDDPPPTVPLKGLPPLFCDSPVTLLISFDKDLVSLALDDQPACEIFLNADGRGEALDRLDELALHLPIKEDTVGFQEEVVLHEVWWSPEPPAEQGRGERASAAGAESAPFAPLDTEVARAAAAAAAAVIDLGVSKGAGRATVGHEGRAADMQPQFSQPLPFDPAPARYGPLMSESHEKGVDGGSDGMGMKLSRLGGLLRSVNERGPGSVVAVNNLPETQAQDAVERIKEDLRTLFQGVGQCPREVHFKPNSSTAFVVLDDPRDLTETVKCLDWAEYAGKKLRMSRSSKRSF 567
            MMGDGSGRVGARRSNVVSLQSRRKQEMSEDLKPGVLTGEGWGKAPSQEEGAREGHATSGRAGPRTPGSGGAQNEKMQTEHAGTRSNISVSLDTLSKRPKQADDFVIPKKAKLVACDEGALISDIGQHSDAFGSTRSLASSAVSQGGGLLEHEGTRAGKEIGAVFVEGKSLDRARFPTQWLARGALEEWDSRQAEGPLVMPLKDFGITPESGKKKVLALRMTVASTAKRFTINICPGPLAPEEGQEVAPKDVIAHFNPRRIYKNGSLVYNARYENRWIDDPPPTVPLKGLPPLFCDSPVTLLISFDKDLVSLALDDQPACEIFLNADGRGEALDRLDELALHLPIKEDTVGFQEEVVLHEVWWSPEPPAEQGRGERASAAGAESAPFAPLDTEVARAAAAAAAAVIDLGVSKGAGRATVGHEGRAADMQPQFSQPLPFDPAPARYGPLMSESHEKGVDGGSDGMGMKLSRLGGLLRSVNERGPGSVVAVNNLPETQAQDAVERIKEDLRTLFQGVGQCPREVHFKPNSSTAFVVLDDPRDLTETVKCLDWAEYAGKKLRMSRSSKRSF
Sbjct:    1 MMGDGSGRVGARRSNVVSLQSRRKQEMSEDLKPGVLTGEGWGKAPSQEEGAREGHATSGRAGPRTPGSGGAQNEKMQTEHAGTRSNISVSLDTLSKRPKQADDFVIPKKAKLVACDEGALISDIGQHSDAFGSTRSLASSAVSQGGGLLEHEGTRAGKEIGAVFVEGKSLDRARFPTQWLARGALEEWDSRQAEGPLVMPLKDFGITPESGKKKVLALRMTVASTAKRFTINICPGPLAPEEGQEVAPKDVIAHFNPRRIYKNGSLVYNARYENRWIDDPPPTVPLKGLPPLFCDSPVTLLISFDKDLVSLALDDQPACEIFLNADGRGEALDRLDELALHLPIKEDTVGFQEEVVLHEVWWSPEPPAEQGRGERASAAGAESAPFAPLDTEVARAAAAAAAAVIDLGVSKGAGRATVGHEGRAADMQPQFSQPLPFDPAPARYGPLMSESHEKGVDGGSDGMGMKLSRLGGLLRSVNERGPGSVVAVNNLPETQAQDAVERIKEDLRTLFQGVGQCPREVHFKPNSSTAFVVLDDPRDLTETVKCLDWAEYAGKKLRMSRSSKRSF 567
[Close]
BLAST of EWM21490.1 vs. NCBI_GenBank
Match: gi|219130146|ref|XP_002185233.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403412|gb|EEC43365.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0258 bits (188), Expect = 3.295e-11
Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = 0 
Query:  194 EGPLVMPLKDFGI-TPESGK-KKVLALRMTVASTAKRFTINICPGPLAPEEGQEVAPKDVIAHFNPRRIYKNGSLVYNARYENRWIDDPPPTVPLKGLPPLFCDSPVTLLISFDKDLVSLALDDQPACEIFLNADGRGEALDRLDELALHLPIKEDTVGFQEEVVLHEVWWSPEPPAEQGRGERASAAGAESA-PFAPLDTEVARAAAAAAAAVIDL 407
            EG   + L +F I   ++G     +A++ T  S +KRF+INI     AP+  +      V+ HFNPR+  + G L+ N + E  W       +PL  +P +F  +  TLLI  + +   + L+ Q    +    + R E     D L L  P  +D  G  E  ++H+VWW  +P     +G+ A+ AG  +     P    V+R A   + A +DL
Sbjct:  265 EGAFAVHLDNFDILQAQNGSGNNTVAVKFTAPSDSKRFSINIA----APDHEEF---HSVLFHFNPRQHERGGQLIVNDKQEGIW--GQAIAIPLSQVPLVFGQTACTLLIQVNGEGFDIFLEGQHCARL----EHRKEIATDTDHLVLQFPSTDD-YGSPENWLVHKVWWGNQPIL--AKGDLANVAGVHTYNALHPRKLFVSRLAKIFSEAEVDL 465
The following BLAST results are available for this feature:
BLAST of EWM21490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101720|gb|EWM21490.1|0.000e+0100.00hypothetical protein Naga_100019g63 [Nannochlorops... [more]
gi|219130146|ref|XP_002185233.1|3.295e-1129.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9207rna9207Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications